Name: Paraburkholderia xenovorans LB400
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1965

Type strain:

Species: Paraburkholderia xenovorans

Strain Designation: LB400

Culture col. no.: DSM 17367, CCUG 46959, CIP 108558, LMG 21463, NRRL B-18064

Strain history: CIP <- 2004, CCUG <- 2002, LMG: strain LB400

NCBI tax ID(s): 36873 (species)

SI-ID 89198

LMG 21463, CCUG 46959, NRRL B-18064, CIP 108558, DSM 17367

Other strains from Paraburkholderia xenovorans

P. xenovorans CCUG 28445, LMG 16224
P. xenovorans CCUG 46958, LMG 21720

Section

Paraburkholderia xenovorans LB400 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from PCB-contaminated soil.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Paraburkholderia*
	Species	**Paraburkholderia xenovorans**
	Full Scientific Name (LPSN)	Paraburkholderia xenovorans (Goris et al. 2004) Sawana et al. 2015

Synonym

Burkholderia xenovorans

Information on morphological and physiological properties Morphology

[Ref.: #31232]	Gram stain	negative
[Ref.: #123975]	Gram stain	negative

[Ref.: #31232]	Cell length	1.5 µm

[Ref.: #31232]	Cell width	0.5 µm

[Ref.: #31232]	Cell shape	rod-shaped
[Ref.: #123975]	Cell shape	rod-shaped

[Ref.: #31232]	Motility	yes
[Ref.: #123975]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6837]

Culture medium

TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)

[Ref.: #6837]

Culture medium growth

[Ref.: #6837]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6837]

Culture medium composition

expand / minimize

[Ref.: #6837]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #6837]

Culture medium growth

[Ref.: #6837]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6837]

Culture medium composition

expand / minimize

[Ref.: #6837]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #6837]

Culture medium growth

[Ref.: #6837]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6837]

Culture medium composition

expand / minimize

[Ref.: #6837]

Culture medium

MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457)

[Ref.: #6837]

Culture medium growth

[Ref.: #6837]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6837]

Culture medium composition

expand / minimize

[Ref.: #41992]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41992]

Culture medium growth

[Ref.: #41992]

Culture medium composition

expand / minimize

[Ref.: #123975]

Culture medium

CIP Medium 72

[Ref.: #123975]

Culture medium growth

[Ref.: #123975]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6837]		growth	28 °C
[Ref.: #6837]		growth	30 °C
[Ref.: #41992]		growth	30 °C
[Ref.: #57422]		growth	28 °C
[Ref.: #123975]		growth	10-37 °C
[Ref.: #123975]	no	growth	5 °C
[Ref.: #123975]	no	growth	41 °C

[Ref.: #6837]	Temperature range	mesophilic
[Ref.: #41992]	Temperature range	mesophilic
[Ref.: #57422]	Temperature range	mesophilic
[Ref.: #123975]	Temperature range	psychrophilic
[Ref.: #123975]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #57422]	Oxygen tolerance	aerobe
[Ref.: #123975]	Oxygen tolerance	obligate aerobe

[Ref.: #31232]

Ability of spore formation

[Ref.: #6837]

Name of produced compound

biphenyl dioxygenase

	Salt	Tested relation		Salt conc.
[Ref.: #123975]	NaCl		growth	0	%
[Ref.: #123975]	NaCl	no	growth	2	%
[Ref.: #123975]	NaCl	no	growth	4	%
[Ref.: #123975]	NaCl	no	growth	6	%
[Ref.: #123975]	NaCl	no	growth	8	%
[Ref.: #123975]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31232]	adipate ChEBI	+	carbon source
[Ref.: #68369]	adipate ChEBI	+	assimilation	* from API 20NE
[Ref.: #31232]	arginine ChEBI	+	carbon source
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #31232]	citrate ChEBI	+	carbon source
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #31232]	decanoate ChEBI	+	carbon source
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #123975]	esculin ChEBI	-	hydrolysis
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #31232]	fructose ChEBI	+	carbon source
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #31232]	gluconate ChEBI	+	carbon source
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #31232]	glucose ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #31232]	lactate ChEBI	+	carbon source
[Ref.: #31232]	malate ChEBI	+	carbon source
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #31232]	mannitol ChEBI	+	carbon source
[Ref.: #31232]	mannose ChEBI	+	carbon source
[Ref.: #31232]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #123975]	nitrate ChEBI	+	reduction
[Ref.: #123975]	nitrate ChEBI	-	respiration
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #123975]	nitrite ChEBI	-	reduction
[Ref.: #31232]	phenylacetate ChEBI	+	carbon source
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #31232]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #123975]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #123975]		indole ChEBI	no
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #31232]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #123975]	alcohol dehydrogenase	+	1.1.1.1
[Ref.: #31232]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #123975]	amylase	-
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #123975]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API 20NE
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123975]	caseinase	-	3.4.21.50
[Ref.: #31232]	catalase	+	1.11.1.6
[Ref.: #123975]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #31232]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	-	1.9.3.1	* from API 20NE
[Ref.: #123975]	DNase	-
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #123975]	gelatinase	-
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #123975]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #123975]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #123975]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123975]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123975]	oxidase	-
[Ref.: #123975]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #123975]	tryptophan deaminase	-
[Ref.: #123975]	tween esterase	-
[Ref.: #123975]	urease	+	3.5.1.5
[Ref.: #68369]	urease	+	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #6837]	24773	-	-	-	-	+	-	-	-	+	-	+	+	+	-	+	+	+	+	+	+	-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #123975]	2804	not determinedn.d.	+	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	+	+	-	+	-	-	-	-	+	+	+	-	-	+	-	-	-	-	-	-	+	+	+	-	-	-	+	+	-	-	+	+	+	+	-	-	+	+	-	+	+	+	-	-	-	-	+	-	+	-	+	-	+	+	+	-	+	+	+	+	+	+	-	+	+	+	+	+	+	-	+	+	-	-	+	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123975]	11282	-	+	-	+	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6837]	Sample type/isolated from	PCB-contaminated soil
[Ref.: #6837]	Geographic location (country and/or sea, region)	Moreau, New York
[Ref.: #6837]	Country	USA
[Ref.: #6837]	Country ISO 3 Code	USA
[Ref.: #6837]	Continent	North America

[Ref.: #57422]	Sample type/isolated from	Soil,PCB-contaminated
[Ref.: #57422]	Geographic location (country and/or sea, region)	New York,Moreau
[Ref.: #57422]	Country	USA
[Ref.: #57422]	Country ISO 3 Code	USA
[Ref.: #57422]	Continent	North America

[Ref.: #123975]	Sample type/isolated from	Environment, Soil
[Ref.: #123975]	Geographic location (country and/or sea, region)	New York
[Ref.: #123975]	Country	United States of America
[Ref.: #123975]	Country ISO 3 Code	USA
[Ref.: #123975]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence U86373 (>99% sequence identity) for Paraburkholderia xenovorans from Microbeatlas

Aquatic Samples	30
Soil Samples	107
Animal Samples	10
Plant Samples	9
Total Samples	156

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6837]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123975]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31232]	Burkholderia xenovorans strain LB400 16S ribosomal RNA gene, partial sequence	U86373	1466	GenBank	266265 tax ID
[Ref.: #20218]	Burkholderia sp. DNA for 16S rRNA, partial sequence	D87109	884	ENA	36873 tax ID	*
[Ref.: #20218]	Burkholderia xenovorans strain LMG 21463 16S ribosomal RNA gene, partial sequence	HQ849108	1124	ENA	36873 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paraburkholderia xenovorans LB400	GCA_000013645	complete	GenBank	266265 tax ID	*
[Ref.: #66792]	Paraburkholderia xenovorans LB400	GCA_000756045	complete	GenBank	266265 tax ID	*
[Ref.: #66792]	Paraburkholderia xenovorans LB400	2775506700	complete	JGI IMG/M	266265 tax ID	*
[Ref.: #66792]	Paraburkholderia xenovorans LB400	637000053	complete	JGI IMG/M	266265 tax ID	*
[Ref.: #66792]	Paraburkholderia xenovorans LB400	2597490151	complete	JGI IMG/M	266265 tax ID	*

[Ref.: #31232]

GC-content

62.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paraburkholderia xenovorans LB400 LB400 NCBI: GCA_000013645.1
[Ref.: #69480]	motile	yes	90.768	no
[Ref.: #69480]	flagellated	no	83.698	no
[Ref.: #69480]	gram-positive	no	98.115	yes
[Ref.: #69480]	anaerobic	no	98.818	no
[Ref.: #69480]	halophile	no	94.285	no
[Ref.: #69480]	spore-forming	no	93.03	yes
[Ref.: #69480]	thermophile	no	99.383	no
[Ref.: #69480]	glucose-util	yes	91.095	yes
[Ref.: #69480]	aerobic	yes	85.638	yes
[Ref.: #69480]	glucose-ferment	no	88.46	no

Availability in culture collections External links

[Ref.: #6837]

Culture collection no.

DSM 17367, CCUG 46959, CIP 108558, LMG 21463, NRRL B-18064

[Ref.: #71610]

SI-ID 89198

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Micro-synteny conservation analysis revealed the evolutionary history of bacterial biphenyl degradation pathway.	Ullah R, Zhu B, Kakar KU, Nawaz Z, Mushtaq M, Durrani TS, Islam ZU, Nawaz F	Environ Microbiol Rep	10.1111/1758-2229.13081	2022	*
Metabolism	The OxyR and SoxR transcriptional regulators are involved in a broad oxidative stress response in Paraburkholderia xenovorans LB400.	Mendez V, Rodriguez-Castro L, Duran RE, Padron G, Seeger M	Biol Res	10.1186/s40659-022-00373-7	2022	*
Metabolism	Augmentation of an Engineered Bacterial Strain Potentially Improves the Cleanup of PCB Water Pollution.	Hara T, Takatsuka Y, Nakata E, Morii T	Microbiol Spectr	10.1128/spectrum.01926-21	2021	*
Phylogeny	Paraburkholderia dioscoreae sp. nov., a novel plant associated growth promotor.	Herpell JB, Vanwijnsberghe S, Peeters C, Schindler F, Fragner L, Bejtovic M, Weckwerth W, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijsem.0.004969	2021	*
Metabolism	Dataset describing biodegradation of individual polychlorinated biphenyl congeners (PCBs) by Paraburkholderia xenovorans LB400 in presence and absence of sediment slurry.	Bako CM, Mattes TE, Marek RF, Hornbuckle KC, Schnoor JL	Data Brief	10.1016/j.dib.2021.106821	2021	*
Metabolism	Biodegradation of PCB congeners by Paraburkholderia xenovorans LB400 in presence and absence of sediment during lab bioreactor experiments.	Bako CM, Mattes TE, Marek RF, Hornbuckle KC, Schnoor JL	Environ Pollut	10.1016/j.envpol.2020.116364	2020	*
Metabolism	Engineering Burkholderia xenovorans LB400 BphA through Site-Directed Mutagenesis at Position 283.	Li J, Min J, Wang Y, Chen W, Kong Y, Guo T, Mahto JK, Sylvestre M, Hu X	Appl Environ Microbiol	10.1128/AEM.01040-20	2020	*
Metabolism	Influence of the carbon source on the properties of poly-(3)-hydroxybutyrate produced by Paraburkholderia xenovorans LB400 and its electrospun fibers.	Sanhueza C, Diaz-Rodriguez P, Villegas P, Gonzalez A, Seeger M, Suarez-Gonzalez J, Concheiro A, Alvarez-Lorenzo C, Acevedo F	Int J Biol Macromol	10.1016/j.ijbiomac.2020.02.080	2020	*
Pathogenicity	Long-chain flavodoxin FldX1 improves Paraburkholderia xenovorans LB400 tolerance to oxidative stress caused by paraquat and H2O2.	Rodriguez-Castro L, Mendez V, Duran RE, Seeger M	PLoS One	10.1371/journal.pone.0221881	2019	*
Enzymology	Manipulating intradiol dioxygenases by C-terminus truncation.	Nazmi AR, Muthu M, Lloyd-Jones G	Enzyme Microb Technol	10.1016/j.enzmictec.2019.02.007	2019	*
Metabolism	Burkholderia xenovorans LB400 possesses a functional polyhydroxyalkanoate anabolic pathway encoded by the pha genes and synthesizes poly(3-hydroxybutyrate) under nitrogen-limiting conditions.	Urtuvia V, Villegas P, Fuentes S, Gonzalez M, Seeger M	Int Microbiol	10.1007/s10123-018-0004-3	2018	*
Metabolism	Analysis of the ars gene cluster from highly arsenic-resistant Burkholderia xenovorans LB400.	Serrato-Gamino N, Salgado-Lora MG, Chavez-Moctezuma MP, Campos-Garcia J, Cervantes C	World J Microbiol Biotechnol	10.1007/s11274-018-2526-4	2018	*
Phylogeny	Paraburkholderia panacihumi sp. nov., an isolate from ginseng-cultivated soil, is antagonistic against root rot fungal pathogen.	Huo Y, Kang JP, Kim YJ, Yang DC	Arch Microbiol	10.1007/s00203-018-1530-2	2018	*
Metabolism	Linkage of the Nit1C gene cluster to bacterial cyanide assimilation as a nitrogen source.	Jones LB, Ghosh P, Lee JH, Chou CN, Kunz DA	Microbiology (Reading)	10.1099/mic.0.000668	2018	*
Metabolism	Bacterial polyhydroxybutyrate for electrospun fiber production.	Acevedo F, Villegas P, Urtuvia V, Hermosilla J, Navia R, Seeger M	Int J Biol Macromol	10.1016/j.ijbiomac.2017.08.066	2017	*
Metabolism	A water-assisted nucleophilic mechanism utilized by BphD, the meta-cleavage product hydrolase in biphenyl degradation.	Dong L, Zhang S, Liu Y	J Mol Graph Model	10.1016/j.jmgm.2017.07.016	2017	*
Genetics	p-Cymene Promotes Its Catabolism through the p-Cymene and the p-Cumate Pathways, Activates a Stress Response and Reduces the Biofilm Formation in Burkholderia xenovorans LB400.	Agullo L, Romero-Silva MJ, Domenech M, Seeger M	PLoS One	10.1371/journal.pone.0169544	2017	*
Metabolism	In Silico Identification of Bioremediation Potential: Carbamazepine and Other Recalcitrant Personal Care Products.	Aukema KG, Escalante DE, Maltby MM, Bera AK, Aksan A, Wackett LP	Environ Sci Technol	10.1021/acs.est.6b04345	2016	*
Metabolism	An aryl dioxygenase shows remarkable double dioxygenation capacity for diverse bis-aryl compounds, provided they are carbocyclic.	Overwin H, Gonzalez M, Mendez V, Seeger M, Wray V, Hofer B	Appl Microbiol Biotechnol	10.1007/s00253-016-7570-0	2016	*
Metabolism	Genetic and Functional Analysis of the Biosynthesis of a Non-Ribosomal Peptide Siderophore in Burkholderia xenovorans LB400.	Vargas-Straube MJ, Camara B, Tello M, Montero-Silva F, Cardenas F, Seeger M	PLoS One	10.1371/journal.pone.0151273	2016	*
Metabolism	chr genes from adaptive replicons are responsible for chromate resistance by Burkholderia xenovorans LB400.	Reyes-Gallegos RI, Ramirez-Diaz MI, Cervantes C	World J Microbiol Biotechnol	10.1007/s11274-015-1996-x	2016	*
Metabolism	Permissivity of the biphenyl-specific aerobic bacterial metabolic pathway towards analogues with various steric requirements.	Overwin H, Standfuss-Gabisch C, Gonzalez M, Mendez V, Seeger M, Reichelt J, Wray V, Hofer B	Microbiology (Reading)	10.1099/mic.0.000138	2015	*
Metabolism	Metabolism of Doubly para-Substituted Hydroxychlorobiphenyls by Bacterial Biphenyl Dioxygenases.	Pham TT, Sondossi M, Sylvestre M	Appl Environ Microbiol	10.1128/AEM.00786-15	2015	*
Metabolism	[Enhanced aerobic degradation of low chlorinated biphenyls by constructing surfactants Burkholderia xenovorans LB400 based system].	Chen SY, Zhang J, Wang H, Ren Y	Huan Jing Ke Xue		2014	*
Metabolism	Nano/bio treatment of polychlorinated biphenyls with evaluation of comparative toxicity.	Le TT, Nguyen KH, Jeon JR, Francis AJ, Chang YS	J Hazard Mater	10.1016/j.jhazmat.2015.02.001	2015	*
Biotechnology	Bacterial production of the biodegradable plastics polyhydroxyalkanoates.	Urtuvia V, Villegas P, Gonzalez M, Seeger M	Int J Biol Macromol	10.1016/j.ijbiomac.2014.06.001	2014	*
Enzymology	Identification of 3-sulfinopropionyl coenzyme A (CoA) desulfinases within the Acyl-CoA dehydrogenase superfamily.	Schurmann M, Demming RM, Krewing M, Rose J, Wubbeler JH, Steinbuchel A	J Bacteriol	10.1128/JB.01265-13	2013	*
Metabolism	Expression of the six chromate ion transporter homologues of Burkholderia xenovorans LB400.	Acosta-Navarrete YM, Leon-Marquez YL, Salinas-Herrera K, Jacome-Galarza IE, Meza-Carmen V, Ramirez-Diaz MI, Cervantes C	Microbiology (Reading)	10.1099/mic.0.073783-0	2013	*
Metabolism	Genomic and functional analyses of the 2-aminophenol catabolic pathway and partial conversion of its substrate into picolinic acid in Burkholderia xenovorans LB400.	Chirino B, Strahsburger E, Agullo L, Gonzalez M, Seeger M	PLoS One	10.1371/journal.pone.0075746	2013	*
Metabolism	Effects of growth substrate on triclosan biodegradation potential of oxygenase-expressing bacteria.	Lee DG, Chu KH	Chemosphere	10.1016/j.chemosphere.2013.06.069	2013	*
Metabolism	The lid domain of the MCP hydrolase DxnB2 contributes to the reactivity toward recalcitrant PCB metabolites.	Ruzzini AC, Bhowmik S, Yam KC, Ghosh S, Bolin JT, Eltis LD	Biochemistry	10.1021/bi400774m	2013	*
Metabolism	Has the bacterial biphenyl catabolic pathway evolved primarily to degrade biphenyl? The diphenylmethane case.	Pham TT, Sylvestre M	J Bacteriol	10.1128/JB.00161-13	2013	*
Genetics	Regulon studies and in planta role of the BraI/R quorum-sensing system in the plant-beneficial Burkholderia cluster.	Coutinho BG, Mitter B, Talbi C, Sessitsch A, Bedmar EJ, Halliday N, James EK, Camara M, Venturi V	Appl Environ Microbiol	10.1128/AEM.00635-13	2013	*
Metabolism	Transformation of hydroxylated derivatives of 2,5-dichlorobiphenyl and 2,4,6-trichlorobiphenyl by Burkholderia xenovorans LB400.	Tehrani R, Lyv MM, Van Aken B	Environ Sci Pollut Res Int	10.1007/s11356-013-1629-6	2013	*
Metabolism	Enhanced degradation of haloacid by heterologous expression in related Burkholderia species.	Su X, Deng L, Kong KF, Tsang JS	Biotechnol Bioeng	10.1002/bit.24917	2013	*
Metabolism	Remediation of polychlorinated biphenyl impacted sediment by concurrent bioaugmentation with anaerobic halorespiring and aerobic degrading bacteria.	Payne RB, Fagervold SK, May HD, Sowers KR	Environ Sci Technol	10.1021/es304372t	2013	*
Metabolism	Decontamination of a polychlorinated biphenyls-contaminated soil by phytoremediation-assisted bioaugmentation.	Secher C, Lollier M, Jezequel K, Cornu JY, Amalric L, Lebeau T	Biodegradation	10.1007/s10532-013-9625-6	2013	*
Metabolism	Genomic and functional analyses of the gentisate and protocatechuate ring-cleavage pathways and related 3-hydroxybenzoate and 4-hydroxybenzoate peripheral pathways in Burkholderia xenovorans LB400.	Romero-Silva MJ, Mendez V, Agullo L, Seeger M	PLoS One	10.1371/journal.pone.0056038	2013	*
Phylogeny	Quantification of the 16S-23S rRNA internal transcribed spacers of Burkholderia xenovorans strain LB400 using real-time PCR in soil samples.	Norini MP, Secher C, Lollier M, Jezequel K, Cornu JY, Lebeau T	Lett Appl Microbiol	10.1111/lam.12057	2013	*
Metabolism	Burkholderia xenovorans RcoM(Bx)-1, a transcriptional regulator system for sensing low and persistent levels of carbon monoxide.	Kerby RL, Roberts GP	J Bacteriol	10.1128/JB.01024-12	2012	*
Metabolism	Structural insights into the metabolism of 2-chlorodibenzofuran by an evolved biphenyl dioxygenase.	Kumar P, Mohammadi M, Dhindwal S, Pham TT, Bolin JT, Sylvestre M	Biochem Biophys Res Commun	10.1016/j.bbrc.2012.04.078	2012	*
Metabolism	Dioxygenation of the biphenyl dioxygenation product.	Overwin H, Gonzalez M, Mendez V, Seeger M, Wray V, Hofer B	Appl Environ Microbiol	10.1128/AEM.00492-12	2012	*
Metabolism	Remarkable ability of Pandoraea pnomenusa B356 biphenyl dioxygenase to metabolize simple flavonoids.	Pham TT, Tu Y, Sylvestre M	Appl Environ Microbiol	10.1128/AEM.00225-12	2012	*
Metabolism	Metabolism of chlorobiphenyls by a variant biphenyl dioxygenase exhibiting enhanced activity toward dibenzofuran.	Viger JF, Mohammadi M, Barriault D, Sylvestre M	Biochem Biophys Res Commun	10.1016/j.bbrc.2012.02.029	2012	*
Enzymology	Protein-protein interactions and substrate channeling in orthologous and chimeric aldolase-dehydrogenase complexes.	Baker P, Hillis C, Carere J, Seah SY	Biochemistry	10.1021/bi201832a	2012	*
Metabolism	Adaptation mechanisms of bacteria during the degradation of polychlorinated biphenyls in the presence of natural and synthetic terpenes as potential degradation inducers.	Zoradova-Murinova S, Dudasova H, Lukacova L, Certik M, Silharova K, Vrana B, Dercova K	Appl Microbiol Biotechnol	10.1007/s00253-011-3763-8	2011	*
Metabolism	Antioxidant compounds improved PCB-degradation by Burkholderia xenovorans strain LB400.	Ponce BL, Latorre VK, Gonzalez M, Seeger M	Enzyme Microb Technol	10.1016/j.enzmictec.2011.04.021	2011	*
Metabolism	Insight into the metabolism of 1,1,1-trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) by biphenyl dioxygenases.	L'Abbee JB, Tu Y, Barriault D, Sylvestre M	Arch Biochem Biophys	10.1016/j.abb.2011.09.016	2011	*
Enzymology	Isolation, characterization and docking studies of 2,3-dihydroxybiphenyl 1,2-dioxygenase from an activated sludge metagenome.	Gou M, Qu Y, Xu B, Zhou J, Li X, Zhou H	Biotechnol Lett	10.1007/s10529-011-0738-x	2011	*
Enzymology	Retuning Rieske-type oxygenases to expand substrate range.	Mohammadi M, Viger JF, Kumar P, Barriault D, Bolin JT, Sylvestre M	J Biol Chem	10.1074/jbc.M111.255174	2011	*
Metabolism	Genomic analysis of the phenylacetyl-CoA pathway in Burkholderia xenovorans LB400.	Patrauchan MA, Parnell JJ, McLeod MP, Florizone C, Tiedje JM, Eltis LD	Arch Microbiol	10.1007/s00203-011-0705-x	2011	*
Enzymology	Elucidating the reaction mechanism of the benzoate oxidation pathway encoded aldehyde dehydrogenase from Burkholderia xenovorans LB400.	Bains J, Leon R, Temke KG, Boulanger MJ	Protein Sci	10.1002/pro.639	2011	*
Metabolism	The homogentisate and homoprotocatechuate central pathways are involved in 3- and 4-hydroxyphenylacetate degradation by Burkholderia xenovorans LB400.	Mendez V, Agullo L, Gonzalez M, Seeger M	PLoS One	10.1371/journal.pone.0017583	2011	*
Metabolism	A product analog bound form of 3-oxoadipate-enol-lactonase (PcaD) reveals a multifunctional role for the divergent cap domain.	Bains J, Kaufman L, Farnell B, Boulanger MJ	J Mol Biol	10.1016/j.jmb.2011.01.007	2011	*
Enzymology	Monitoring biodegradative enzymes with nanobodies raised in Camelus dromedarius with mixtures of catabolic proteins.	Zafra O, Fraile S, Gutierrez C, Haro A, Paez-Espino AD, Jimenez JI, de Lorenzo V	Environ Microbiol	10.1111/j.1462-2920.2010.02401.x	2011	*
Genetics	Anaerobic crystallization and initial X-ray diffraction data of biphenyl 2,3-dioxygenase from Burkholderia xenovorans LB400: addition of agarose improved the quality of the crystals.	Kumar P, Gomez-Gil L, Mohammadi M, Sylvestre M, Eltis LD, Bolin JT	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/S1744309110043393	2010	*
Enzymology	Structural insight into the expanded PCB-degrading abilities of a biphenyl dioxygenase obtained by directed evolution.	Kumar P, Mohammadi M, Viger JF, Barriault D, Gomez-Gil L, Eltis LD, Bolin JT, Sylvestre M	J Mol Biol	10.1016/j.jmb.2010.11.009	2010	*
Metabolism	Triclosan susceptibility and co-metabolism--a comparison for three aerobic pollutant-degrading bacteria.	Kim YM, Murugesan K, Schmidt S, Bokare V, Jeon JR, Kim EJ, Chang YS	Bioresour Technol	10.1016/j.biortech.2010.10.009	2010	*
Metabolism	Biodegradation of polyfluorinated biphenyl in bacteria.	Hughes D, Clark BR, Murphy CD	Biodegradation	10.1007/s10532-010-9411-7	2010	*
Metabolism	Hybrid pseudomonads engineered by two-step homologous recombination acquire novel degradation abilities toward aromatics and polychlorinated biphenyls.	Suenaga H, Nonaka K, Fujihara H, Goto M, Furukawa K	Appl Microbiol Biotechnol	10.1007/s00253-010-2840-8	2010	*
Metabolism	Mineralization of PCBs by the genetically modified strain Cupriavidus necator JMS34 and its application for bioremediation of PCBs in soil.	Saavedra JM, Acevedo F, Gonzalez M, Seeger M	Appl Microbiol Biotechnol	10.1007/s00253-010-2575-6	2010	*
Enzymology	Purification and crystallization of a putative transcriptional regulator of the benzoate oxidation pathway in Burkholderia xenovorans LB400.	Law AM, Bains J, Boulanger MJ	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/S1744309109032321	2009	*
Metabolism	Terminal-restriction fragment length polymorphism analysis of biphenyl dioxygenase genes from a polychlorinated biphenyl-polluted soil.	Capodicasa S, Fedi S, Carnevali M, Caporali L, Viti C, Fava F, Zannoni D	Res Microbiol	10.1016/j.resmic.2009.10.001	2009	*
Metabolism	Aerobic biotransformation of polybrominated diphenyl ethers (PBDEs) by bacterial isolates.	Robrock KR, Coelhan M, Sedlak DL, Alvarez-Cohent L	Environ Sci Technol	10.1021/es900411k	2009	*
Metabolism	Environmentally relevant parameters affecting PCB degradation: carbon source- and growth phase-mitigated effects of the expression of the biphenyl pathway and associated genes in Burkholderia xenovorans LB400.	Parnell JJ, Denef VJ, Park J, Tsoi T, Tiedje JM	Biodegradation	10.1007/s10532-009-9289-4	2009	*
Enzymology	Investigative mining of sequence data for novel enzymes: a case study with nitrilases.	Seffernick JL, Samanta SK, Louie TM, Wackett LP, Subramanian M	J Biotechnol	10.1016/j.jbiotec.2009.06.004	2009	*
Enzymology	Characterization of an aldolase-dehydrogenase complex that exhibits substrate channeling in the polychlorinated biphenyls degradation pathway.	Baker P, Pan D, Carere J, Rossi A, Wang W, Seah SY	Biochemistry	10.1021/bi9006644	2009	*
Pathogenicity	New mobile genetic elements in Cupriavidus metallidurans CH34, their possible roles and occurrence in other bacteria.	Van Houdt R, Monchy S, Leys N, Mergeay M	Antonie Van Leeuwenhoek	10.1007/s10482-009-9345-4	2009	*
Enzymology	Structural and biophysical characterization of BoxC from Burkholderia xenovorans LB400: a novel ring-cleaving enzyme in the crotonase superfamily.	Bains J, Leon R, Boulanger MJ	J Biol Chem	10.1074/jbc.M900226200	2009	*
Metabolism	Diversity of the C-terminal portion of the biphenyl dioxygenase large subunit.	Vezina J, Barriault D, Sylvestre M	J Mol Microbiol Biotechnol	10.1159/000121326	2008	*
Metabolism	Bacterial metabolism of polychlorinated biphenyls.	Pieper DH, Seeger M	J Mol Microbiol Biotechnol	10.1159/000121325	2008	*
Metabolism	Structural and biochemical characterization of a novel aldehyde dehydrogenase encoded by the benzoate oxidation pathway in Burkholderia xenovorans LB400.	Bains J, Boulanger MJ	J Mol Biol	10.1016/j.jmb.2008.04.031	2008	*
Enzymology	Purification, crystallization and X-ray diffraction analysis of a novel ring-cleaving enzyme (BoxC(C)) from Burkholderia xenovorans LB400.	Bains J, Boulanger MJ	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/S1744309108010919	2008	*
Enzymology	Biphenyl dioxygenase from an arctic isolate is not cold adapted.	Master ER, Agar NY, Gomez-Gil L, Powlowski JB, Mohn WW, Eltis LD	Appl Environ Microbiol	10.1128/AEM.02928-07	2008	*
Metabolism	Distinct roles for two CYP226 family cytochromes P450 in abietane diterpenoid catabolism by Burkholderia xenovorans LB400.	Smith DJ, Patrauchan MA, Florizone C, Eltis LD, Mohn WW	J Bacteriol	10.1128/JB.01530-07	2007	*
Metabolism	Biodegradation of PCBs in two-phase partitioning bioreactors following solid extraction from soil.	Rehmann L, Daugulis AJ	Biotechnol Bioeng	10.1002/bit.21674	2008	*
Metabolism	Biochemical and structural characterization of the paralogous benzoate CoA ligases from Burkholderia xenovorans LB400: defining the entry point into the novel benzoate oxidation (box) pathway.	Bains J, Boulanger MJ	J Mol Biol	10.1016/j.jmb.2007.08.008	2007	*
Metabolism	Enhancement of PCB degradation by Burkholderia xenovorans LB400 in biphasic systems by manipulating culture conditions.	Rehmann L, Daugulis AJ	Biotechnol Bioeng	10.1002/bit.21610	2008	*
Metabolism	A large gene cluster in Burkholderia xenovorans encoding abietane diterpenoid catabolism.	Smith DJ, Park J, Tiedje JM, Mohn WW	J Bacteriol	10.1128/JB.00179-07	2007	*
Metabolism	Polymer selection for biphenyl degradation in a solid-liquid two-phase partitioning bioreactor.	Rehmann L, Sun B, Daugulis AJ	Biotechnol Prog	10.1021/bp0700962	2007	*
Enzymology	Characterization of biphenyl dioxygenase of Pandoraea pnomenusa B-356 as a potent polychlorinated biphenyl-degrading enzyme.	Gomez-Gil L, Kumar P, Barriault D, Bolin JT, Sylvestre M, Eltis LD	J Bacteriol	10.1128/JB.01476-06	2007	*
Metabolism	Chlorobenzoate inhibits growth and induces stress proteins in the PCB-degrading bacterium Burkholderia xenovorans LB400.	Martinez P, Agullo L, Hernandez M, Seeger M	Arch Microbiol	10.1007/s00203-007-0247-4	2007	*
Metabolism	The tautomeric half-reaction of BphD, a C-C bond hydrolase. Kinetic and structural evidence supporting a key role for histidine 265 of the catalytic triad.	Horsman GP, Bhowmik S, Seah SY, Kumar P, Bolin JT, Eltis LD	J Biol Chem	10.1074/jbc.M702237200	2007	*
Metabolism	Characterization of a C-C bond hydrolase from Sphingomonas wittichii RW1 with novel specificities towards polychlorinated biphenyl metabolites.	Seah SY, Ke J, Denis G, Horsman GP, Fortin PD, Whiting CJ, Eltis LD	J Bacteriol	10.1128/JB.01950-06	2007	*
Enzymology	Synthesis of highly hydroxylated aromatics by evolved biphenyl dioxygenase and subsequent dihydrodiol dehydrogenase.	Shindo K, Shindo Y, Hasegawa T, Osawa A, Kagami O, Furukawa K, Misawa N	Appl Microbiol Biotechnol	10.1007/s00253-007-0928-6	2007	*
Pathogenicity	Motility and chemotaxis of Pseudomonas sp. B4 towards polychlorobiphenyls and chlorobenzoates.	Gordillo F, Chavez FP, Jerez CA	FEMS Microbiol Ecol	10.1111/j.1574-6941.2007.00293.x	2007	*
Metabolism	Generation by a widely applicable approach of a hybrid dioxygenase showing improved oxidation of polychlorobiphenyls.	Camara B, Seeger M, Gonzalez M, Standfuss-Gabisch C, Kahl S, Hofer B	Appl Environ Microbiol	10.1128/AEM.02523-06	2007	*
Metabolism	Response to (chloro)biphenyls of the polychlorobiphenyl-degrader Burkholderia xenovorans LB400 involves stress proteins also induced by heat shock and oxidative stress.	Agullo L, Camara B, Martinez P, Latorre V, Seeger M	FEMS Microbiol Lett	10.1111/j.1574-6968.2006.00554.x	2006	*
Metabolism	Family shuffling of soil DNA to change the regiospecificity of Burkholderia xenovorans LB400 biphenyl dioxygenase.	Vezina J, Barriault D, Sylvestre M	J Bacteriol	10.1128/JB.01267-06	2006	*
Phylogeny	Burkholderia ginsengisoli sp. nov., a beta-glucosidase-producing bacterium isolated from soil of a ginseng field.	Kim HB, Park MJ, Yang HC, An DS, Jin HZ, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.64387-0	2006	*
Genetics	Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility.	Chain PS, Denef VJ, Konstantinidis KT, Vergez LM, Agullo L, Reyes VL, Hauser L, Cordova M, Gomez L, Gonzalez M, Land M, Lao V, Larimer F, LiPuma JJ, Mahenthiralingam E, Malfatti SA, Marx CJ, Parnell JJ, Ramette A, Richardson P, Seeger M, Smith D, Spilker T, Sul WJ, Tsoi TV, Ulrich LE, Zhulin IB, Tiedje JM	Proc Natl Acad Sci U S A	10.1073/pnas.0606924103	2006	*
Genetics	The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse.	McLeod MP, Warren RL, Hsiao WW, Araki N, Myhre M, Fernandes C, Miyazawa D, Wong W, Lillquist AL, Wang D, Dosanjh M, Hara H, Petrescu A, Morin RD, Yang G, Stott JM, Schein JE, Shin H, Smailus D, Siddiqui AS, Marra MA, Jones SJ, Holt R, Brinkman FS, Miyauchi K, Fukuda M, Davies JE, Mohn WW, Eltis LD	Proc Natl Acad Sci U S A	10.1073/pnas.0607048103	2006	*
Enzymology	Catalytic role for arginine 188 in the C-C hydrolase catalytic mechanism for Escherichia coli MhpC and Burkholderia xenovorans LB400 BphD.	Li C, Li JJ, Montgomery MG, Wood SP, Bugg TD	Biochemistry	10.1021/bi061253t	2006	*
Enzymology	Evidence for a gem-diol reaction intermediate in bacterial C-C hydrolase enzymes BphD and MhpC from 13C NMR spectroscopy.	Li JJ, Li C, Blindauer CA, Bugg TD	Biochemistry	10.1021/bi0612519	2006	*
Pathogenicity	Coping with polychlorinated biphenyl (PCB) toxicity: Physiological and genome-wide responses of Burkholderia xenovorans LB400 to PCB-mediated stress.	Parnell JJ, Park J, Denef V, Tsoi T, Hashsham S, Quensen J 3rd, Tiedje JM	Appl Environ Microbiol	10.1128/AEM.01129-06	2006	*
Metabolism	Expression of bacterial biphenyl-chlorobiphenyl dioxygenase genes in tobacco plants.	Mohammadi M, Chalavi V, Novakova-Sura M, Laliberte JF, Sylvestre M	Biotechnol Bioeng	10.1002/bit.21188	2007	*
Metabolism	Kinetic and structural insight into the mechanism of BphD, a C-C bond hydrolase from the biphenyl degradation pathway.	Horsman GP, Ke J, Dai S, Seah SY, Bolin JT, Eltis LD	Biochemistry	10.1021/bi0611098	2006	*
Enzymology	Structures of ternary complexes of BphK, a bacterial glutathione S-transferase that reductively dechlorinates polychlorinated biphenyl metabolites.	Tocheva EI, Fortin PD, Eltis LD, Murphy ME	J Biol Chem	10.1074/jbc.M603125200	2006	*
Metabolism	A glutathione S-transferase catalyzes the dehalogenation of inhibitory metabolites of polychlorinated biphenyls.	Fortin PD, Horsman GP, Yang HM, Eltis LD	J Bacteriol	10.1128/JB.01849-05	2006	*
Metabolism	Chlorophenol hydroxylases encoded by plasmid pJP4 differentially contribute to chlorophenoxyacetic acid degradation.	Ledger T, Pieper DH, Gonzalez B	Appl Environ Microbiol	10.1128/AEM.72.4.2783-2792.2006	2006	*
Metabolism	Degradation of aroclor 1242 dechlorination products in sediments by Burkholderia xenovorans LB400(ohb) and Rhodococcus sp. strain RHA1(fcb).	Rodrigues JL, Kachel CA, Aiello MR, Quensen JF, Maltseva OV, Tsoi TV, Tiedje JM	Appl Environ Microbiol	10.1128/AEM.72.4.2476-2482.2006	2006	*
Phylogeny	Polychlorinated biphenyl (PCB)-degrading bacteria associated with trees in a PCB-contaminated site.	Leigh MB, Prouzova P, Mackova M, Macek T, Nagle DP, Fletcher JS	Appl Environ Microbiol	10.1128/AEM.72.4.2331-2342.2006	2006	*
Metabolism	Nitrate-dependent anaerobic carbon monoxide oxidation by aerobic CO-oxidizing bacteria.	King GM	FEMS Microbiol Ecol	10.1111/j.1574-6941.2006.00065.x	2006	*
Enzymology	Generation of novel-substrate-accepting biphenyl dioxygenases through segmental random mutagenesis and identification of residues involved in enzyme specificity.	Zielinski M, Kahl S, Standfuss-Gabisch C, Camara B, Seeger M, Hofer B	Appl Environ Microbiol	10.1128/AEM.72.3.2191-2199.2006	2006	*
Metabolism	The clc element of Pseudomonas sp. strain B13, a genomic island with various catabolic properties.	Gaillard M, Vallaeys T, Vorholter FJ, Minoia M, Werlen C, Sentchilo V, Puhler A, van der Meer JR	J Bacteriol	10.1128/JB.188.5.1999-2013.2006	2006	*
Genetics	Genetic and genomic insights into the role of benzoate-catabolic pathway redundancy in Burkholderia xenovorans LB400.	Denef VJ, Klappenbach JA, Patrauchan MA, Florizone C, Rodrigues JL, Tsoi TV, Verstraete W, Eltis LD, Tiedje JM	Appl Environ Microbiol	10.1128/AEM.72.1.585-595.2006	2006	*
Enzymology	Biphenyl degradation kinetics by Burkholderia xenovorans LB400 in two-phase partitioning bioreactors.	Rehmann L, Daugulis AJ	Chemosphere	10.1016/j.chemosphere.2005.08.076	2005	*
Metabolism	Growth substrate- and phase-specific expression of biphenyl, benzoate, and C1 metabolic pathways in Burkholderia xenovorans LB400.	Denef VJ, Patrauchan MA, Florizone C, Park J, Tsoi TV, Verstraete W, Tiedje JM, Eltis LD	J Bacteriol	10.1128/JB.187.23.7996-8005.2005	2005	*
Metabolism	Active-site engineering of biphenyl dioxygenase: effect of substituted amino acids on substrate specificity and regiospecificity.	Suenaga H, Goto M, Furukawa K	Appl Microbiol Biotechnol	10.1007/s00253-005-0135-2	2005	*
Metabolism	Resolving the profile of metabolites generated during oxidation of dibenzofuran and chlorodibenzofurans by the biphenyl catabolic pathway enzymes.	Mohammadi M, Sylvestre M	Chem Biol	10.1016/j.chembiol.2005.05.017	2005	*
Metabolism	Metabolism of dibenzofuran and dibenzo-p-dioxin by the biphenyl dioxygenase of Burkholderia xenovorans LB400 and Comamonas testosteroni B-356.	L'Abbee JB, Barriault D, Sylvestre M	Appl Microbiol Biotechnol	10.1007/s00253-004-1791-3	2005	*
Enzymology	Insight into pollutant bioavailability and toxicity using Raman confocal microscopy.	Singer AC, Huang WE, Helm J, Thompson IP	J Microbiol Methods	10.1016/j.mimet.2004.10.016	2005	*
Metabolism	Stereochemistry of the reaction catalysed by 2-hydroxy-6-keto-6-phenyl-hexa-2,4-dienoic acid 5,6-hydrolase (BphD).	Li JJ, Bugg TD	Chem Commun (Camb)	10.1039/b415491f	2004	*
Phylogeny	Classification of the biphenyl- and polychlorinated biphenyl-degrading strain LB400T and relatives as Burkholderia xenovorans sp. nov.	Goris J, De Vos P, Caballero-Mellado J, Park J, Falsen E, Quensen JF, Tiedje JM, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijs.0.63101-0	2004	*
Metabolism	Revisiting the regiospecificity of Burkholderia xenovorans LB400 biphenyl dioxygenase toward 2,2'-dichlorobiphenyl and 2,3,2',3'-tetrachlorobiphenyl.	Barriault D, Lepine F, Mohammadi M, Milot S, Leberre N, Sylvestre M	J Biol Chem	10.1074/jbc.M406808200	2004	*
Metabolism	Evolution of the biphenyl dioxygenase BphA from Burkholderia xenovorans LB400 by random mutagenesis of multiple sites in region III.	Barriault D, Sylvestre M	J Biol Chem	10.1074/jbc.M406805200	2004	*
Metabolism	Biphenyl and benzoate metabolism in a genomic context: outlining genome-wide metabolic networks in Burkholderia xenovorans LB400.	Denef VJ, Park J, Tsoi TV, Rouillard JM, Zhang H, Wibbenmeyer JA, Verstraete W, Gulari E, Hashsham SA, Tiedje JM	Appl Environ Microbiol	10.1128/AEM.70.8.4961-4970.2004	2004	*
Metabolism	Aerobic Bioaugmentation to Decrease Polychlorinated Biphenyl (PCB) Emissions from Contaminated Sediments to Air.	Bako CM, Martinez A, Ewald JM, Hua JBX, Ramotowski DJ, Dong Q, Schnoor JL, Mattes TE	Environ Sci Technol	10.1021/acs.est.2c01043	2022	*
	The Integrative Conjugative Element clc (ICEclc) of Pseudomonas aeruginosa JB2.	Obi CC, Vayla S, de Gannes V, Berres ME, Walker J, Pavelec D, Hyman J, Hickey WJ	Front Microbiol	10.3389/fmicb.2018.01532	2018	*
	Enhanced Polychlorinated Biphenyl Removal in a Switchgrass Rhizosphere by Bioaugmentation with Burkholderia xenovorans LB400.	Liang Y, Meggo R, Hu D, Schnoor JL, Mattes TE	Ecol Eng	10.1016/j.ecoleng.2014.07.046	2014	*
	The Three-Species Consortium of Genetically Improved Strains Cupriavidus necator RW112, Burkholderia xenovorans RW118, and Pseudomonas pseudoalcaligenes RW120 Grows with Technical Polychlorobiphenyl, Aroclor 1242.	Hernandez-Sanchez V, Lang E, Wittich RM	Front Microbiol	10.3389/fmicb.2013.00090	2013	*

References

#6837

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17367

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31232

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27557 (see below)

#41992 ; Curators of the CIP;
#57422 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 46959

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#71610

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID89198.1 )

#123975 Collection of Institut Pasteur ; Curators of the CIP; CIP 108558

#27557

IJSEM 1677 2004 ( DOI 10.1099/ijs.0.63101-0 , PubMed 15388727 )

* These data were automatically processed and therefore are not curated

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Paraburkholderia xenovorans LB400 LB400

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