Schaalia naturae (DSM 26713, CCUG 56698, NRRL B-24670)

Name: Schaalia naturae (DSM 26713, CCUG 56698, NRRL B-24670)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 195

Type strain

Strain Designation BL-79

Culture col. no. DSM 26713 CCUG 56698 NRRL B-24670 BL-79

NCBI tax ID(s) 635203

Special Collections DSMZ CCUG

History <- NRRL; NRRL-B-24670

Links

Schaalia naturae BL-79 is an anaerobe bacterium that was isolated from chlorinated solvent contaminated groundwater.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 406130

DSM 26713,CCUG 56698

@ref 20215

Last LPSN update 2026-02-09 11:17:49

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Actinomycetales

Family Actinomycetaceae

Genus Schaalia

Species Schaalia naturae

Full scientific name Schaalia naturae (Rao et al. 2012) Nouioui et al. 2018

Synonyms (1)

Actinomyces naturae

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
18274	PYG MEDIUM (MODIFIED) (DSMZ Medium 104)		Medium recipe at MediaDive	Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
18274	positive	growth	37
61062	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
18274	anaerobe
61062	anaerobe
61062	microaerophile

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68380	16024 ChEBI	D-mannose	+	fermentation	from API rID32A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68380	alpha-galactosidase	+	3.2.1.22	from API rID32A
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	L-arginine arylamidase	+		from API rID32A
68380	leucine arylamidase	+	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	+		from API rID32A
68380	proline-arylamidase	+	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	+		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
18274	-	-	+	+	-	+/-	+/-	+/-	-	-	+	-	-	-	-	-	-	+	+	-	+	+	-	+	-	-	+/-	-	+/-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Contamination	-
#Environmental	#Aquatic	#Groundwater

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
18274	chlorinated solvent contaminated groundwater		Baton Rouge, LA; PetroProcessors of Louisiana, Inc	USA	USA	North America
61062	Groundwater	2005	Louisiana,Baton Rouge	USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence FJ234421 (>99% sequence identity) for Schaalia naturae subclade from Microbeatlas

Aquatic Samples	122
Soil Samples	84
Animal Samples	718
Plant Samples	24
Total Samples	948

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18274	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4266579v1 assembly for Schaalia naturae CCUG 56698	contig	GCA_042665795	635203	66.96
124043	ASM4267906v1 assembly for Schaalia naturae CCUG 56698	scaffold	GCA_042679065	635203	12.88

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
18274	Actinomyces naturae 16S ribosomal RNA gene, partial sequence	FJ234421	1463		635203

GC content

18274

GC-content (mol%)69.8

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Phylogeny	Actinomyces naturae sp. nov., the first Actinomyces sp. isolated from a non-human or animal source.	Rao JU, Rash BA, Nobre MF, da Costa MS, Rainey FA, Moe WM	Antonie Van Leeuwenhoek	10.1007/s10482-011-9644-4	2011

References

#18274	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26713
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#61062	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56698
#68380	Automatically annotated from API rID32A .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Schaalia naturae (DSM 26713, CCUG 56698, NRRL B-24670)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042665795

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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