Burkholderia plantarii (DSM 9509, ATCC 43733, ICMP 9424)

Name: Burkholderia plantarii (DSM 9509, ATCC 43733, ICMP 9424)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1917

Type strain

Strain Designation AZ 8201

Culture col. no. DSM 9509 ATCC 43733 ICMP 9424 JCM 5492 LMG 9035 12 more

NCBI tax ID(s) 41899

Special Collections DSMZ CCUG JCM KCTC CIP JMRC

History DSMZ <- JCM <- K. Azegami; AZ 8201 CIP <- 1998, CFBP JCM <-- K. Azegami AZ8201. CIP <- 1998, CFBP

Links

Burkholderia plantarii AZ 8201 is an obligate aerobe, Gram-negative, rod-shaped plant pathogen that was isolated from rice seedling.

Gram-negative rod-shaped obligate aerobe plant pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 4203

LMG 9035,ATCC 43733,ICMP 9424,JCM 5492,CCUG 23368,CIP 105769,CFBP 3997,NCPPB 3590,DSM 9509,NCCB 95038,LMD 95.38,KCTC 2972,KACC 10679,CFBP 3573

@ref 20215

Last LPSN update 2026-05-29 08:25:22

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Burkholderia

Species Burkholderia plantarii

Full scientific name Burkholderia plantarii (Azegami et al. 1987) Urakami et al. 1994

Synonyms (2)

Pseudomonas plantarii
Burkholderia vandii

BacDive ID	Other strains from **Burkholderia plantarii** (5)	Type strain
1916	B. plantarii AZ8202, DSM 7128, NCPPB 3676
1918	B. plantarii VA-1316, DSM 9510, ATCC 51545, JCM 7957, ...
147038	B. plantarii CCUG 32700, LMG 10907
147039	B. plantarii CCUG 32701, ICMP 9426, LMG 10908
147040	B. plantarii CCUG 32702, LMG 10909

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
121853	negative	rod-shaped
125438	negative			97

Colony morphology

3621

Incubation period1-2 days

Pigmentation

@ref	Production	Name
121853		Pyocyanin

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
3621	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
41941	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
121853	CIP Medium 72	Medium recipe at CIP
121853	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
3621	positive	growth	30
41941	positive	growth	30
47799	positive	growth	28
67770	positive	growth	30
121853	positive	growth	25-37
121853	negative	growth	5
121853	negative	growth	10
121853	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
121853	obligate aerobe
125439	obligate aerobe	97.357

Spore formation

@ref	Spore formation	Confidence
125439		98.085

Compound production

3621

Compoundtropolone

Observation

67770

Observationquinones: Q-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
121853	16947 ChEBI	citrate	+	carbon source
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
121853	4853 ChEBI	esculin	-	hydrolysis
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
121853	17632 ChEBI	nitrate	+	reduction
121853	17632 ChEBI	nitrate	-	respiration
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
121853	16301 ChEBI	nitrite	-	reduction
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
121853	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE
121853	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
121853	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
121853	amylase	-
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
121853	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
121853	caseinase	+	3.4.21.50
3621	catalase	+	1.11.1.6
121853	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
3621	cytochrome-c oxidase	+	1.9.3.1
121853	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
121853	gelatinase	+/-
68369	gelatinase	+		from API 20NE
121853	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
121853	lipase	+
68382	lipase (C 14)	+		from API zym
121853	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121853	ornithine decarboxylase	-	4.1.1.17
121853	oxidase	+
121853	protease	+
68382	trypsin	-	3.4.21.4	from API zym
121853	tryptophan deaminase	-
121853	tween esterase	-
121853	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121853	-	+	+	+	+	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
3621	+	-	-	-	-	+	+	+	+	+	+	+	+	-	+/-	+	-	+	+	+/-	+
3621	+	-	-	-	-	-	+	-	+	+/-	+	+	+	-	-	+	-	+	-	-	+
3621	+	-	-	-	-	-	+	+	+	+	+	+	+	-	+	+	-	+	+	-	not determinedn.d.

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
121853	not determinedn.d.	+	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	+	+	-	+	-	-	+	-	-	+	+	-	-	+	-	-	-	-	-	-	+	+	+	+	-	-	+	+	-	-	+	-	-	+	-	-	+	+	-	+	+	+	-	-	-	-	-	-	+	-	+	-	-	+	+	+	+	+	-	+	-	-	-	-	-	+	+	+	+	-	+	+	+	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Sampling date	Isolation date
3621	rice seedling	Omigawa	Japan	JPN	Asia
47799	Oryza sativa cv. Koshihikari		Japan	JPN	Asia	1982
67770	Rice seedling	Omigawa,Chiba	Japan	JPN	Asia
121853	Oryza sativa		Japan	JPN	Asia		1982

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
3621		1	Risk group (German classification) According to TRBA 466
121853		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM141180v1 assembly for Burkholderia plantarii ATCC 43733	complete	GCA_001411805	41899.3	2687453568	41899	96.41
66792	ASM90283290v1 assembly for Burkholderia plantarii LMG 9035	scaffold	GCA_902832905	41899.18	8111902809	41899	62.75

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Burkholderia plantarii strain LMG 9035 16S ribosomal RNA gene, partial sequence	HQ849098	1124	41899
3621	Burkholderia plantarii 16S ribosomal RNA gene, partial sequence	U96933	1549	41899
124043	Burkholderia plantarii gene for 16S rRNA, partial sequence, strain: NBRC 104884.	AB682218	1458	41899
124043	Burkholderia plantarii strain NCPPB 3590 16S ribosomal RNA gene, partial sequence.	KC188308	755	41899
124043	Burkholderia plantarii strain CIP 105769 16S ribosomal RNA gene, partial sequence.	EU024176	1313	41899

GC content

@ref	GC-content (mol%)	Method
3621	64.8	Buoyant density centrifugation (BD)
3621	68.7
67770	68.7	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM141180v1 assembly for Burkholderia plantarii ATCC 43733
BV-BRC: 41899.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.36	no
125439	gram_stain	BacteriaNetⓘ	negative	85.75	no
125439	motility	BacteriaNetⓘ	yes	68.52	no
125439	spore_formation	BacteriaNetⓘ	no	98.09	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Burkholderia plantarii ATCC 43733
NCBI: GCA_001411805.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.00	no
125438	anaerobic	anaerobicⓘ	no	97.56	yes
125438	aerobic	aerobicⓘ	yes	88.80	yes
125438	spore-forming	spore-formingⓘ	no	87.00	no
125438	thermophilic	thermophileⓘ	no	95.48	yes
125438	flagellated	motile2+ⓘ	yes	83.51	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Development and application of an efficient recombineering system for Burkholderia glumae and Burkholderia plantarii.	Li R, Shi H, Zhao X, Liu X, Duan Q, Song C, Chen H, Zheng W, Shen Q, Wang M, Wang X, Gong K, Yin J, Zhang Y, Li A, Fu J.	Microb Biotechnol	10.1111/1751-7915.13840	2021
	An Overview of Metabolic Activity, Beneficial and Pathogenic Aspects of Burkholderia Spp.	Elshafie HS, Camele I.	Metabolites	10.3390/metabo11050321	2021
Genetics	Exploring the comparative genome of rice pathogen Burkholderia plantarii: unveiling virulence, fitness traits, and a potential type III secretion system effector.	Mannaa M, Lee D, Lee HH, Han G, Kang M, Kim TJ, Park J, Seo YS.	Front Plant Sci	10.3389/fpls.2024.1416253	2024
Genetics	Genomics-Driven Discovery of Plantariitin A, a New Lipopeptide in Burkholderia plantarii DSM9509.	Wang X, Zhang Z, Fu J, Li R.	Molecules	10.3390/molecules30040868	2025
	Polyyne-producing Burkholderia suppress Globisporangium ultimum damping-off disease of Pisum sativum (pea).	Webster G, Mullins AJ, Petrova YD, Mahenthiralingam E.	Front Microbiol	10.3389/fmicb.2023.1240206	2023
Genetics	Comparative Genome Analyses Provide Insight into the Antimicrobial Activity of Endophytic Burkholderia.	Jia J, Lu SE.	Microorganisms	10.3390/microorganisms12010100	2024
	Genome-based taxonomy of Burkholderia sensu lato: Distinguishing closely related species.	Bach E, Volpiano CG, Sant'Anna FH, Passaglia LMP.	Genet Mol Biol	10.1590/1678-4685-gmb-2023-0122	2023
Metabolism	Identification of the Three Genes Involved in Controlling Production of a Phytotoxin Tropolone in Burkholderia plantarii.	Miwa S, Kihira E, Yoshioka A, Nakasone K, Okamoto S, Hatano M, Igarashi M, Eguchi Y, Kato A, Ichikawa N, Sekine M, Fujita N, Kanesaki Y, Yoshikawa H, Utsumi R.	J Bacteriol	10.1128/jb.01028-15	2016
Enzymology	Marine Actinobacteria as a source of compounds for phytopathogen control: An integrative metabolic-profiling / bioactivity and taxonomical approach.	Betancur LA, Naranjo-Gaybor SJ, Vinchira-Villarraga DM, Moreno-Sarmiento NC, Maldonado LA, Suarez-Moreno ZR, Acosta-Gonzalez A, Padilla-Gonzalez GF, Puyana M, Castellanos L, Ramos FA.	PLoS One	10.1371/journal.pone.0170148	2017
Metabolism	Repression of tropolone production and induction of a Burkholderia plantarii pseudo-biofilm by carot-4-en-9,10-diol, a cell-to-cell signaling disrupter produced by Trichoderma virens.	Wang M, Hashimoto M, Hashidoko Y.	PLoS One	10.1371/journal.pone.0078024	2013
Phylogeny	Molecular method to assess the diversity of Burkholderia species in environmental samples.	Salles JF, De Souza FA, van Elsas JD.	Appl Environ Microbiol	10.1128/aem.68.4.1595-1603.2002	2002
Metabolism	Biosynthesis of fragin is controlled by a novel quorum sensing signal.	Jenul C, Sieber S, Daeppen C, Mathew A, Lardi M, Pessi G, Hoepfner D, Neuburger M, Linden A, Gademann K, Eberl L.	Nat Commun	10.1038/s41467-018-03690-2	2018
Phylogeny	Matrix-assisted laser desorption ionization-time of flight mass spectrometry for identification of nonfermenting gram-negative bacilli isolated from cystic fibrosis patients.	Degand N, Carbonnelle E, Dauphin B, Beretti JL, Le Bourgeois M, Sermet-Gaudelus I, Segonds C, Berche P, Nassif X, Ferroni A.	J Clin Microbiol	10.1128/jcm.00569-08	2008
	Genomic Assemblies of Members of Burkholderia and Related Genera as a Resource for Natural Product Discovery.	Mullins AJ, Jones C, Bull MJ, Webster G, Parkhill J, Connor TR, Murray JAH, Challis GL, Mahenthiralingam E.	Microbiol Resour Announc	10.1128/mra.00485-20	2020
	DISCRIMINATION OF Burkholderia mallei/pseudomallei FROM Burkholderia thailandensis BY SEQUENCE COMPARISON OF A FRAGMENT OF THE RIBOSOMAL PROTEIN S21 (RPSU) GENE.	Frickmann H, Chantratita N, Gauthier YP, Neubauer H, Hagen RM.	Eur J Microbiol Immunol (Bp)	10.1556/eujmi.2.2012.2.8	2012
Genetics	Multilocus sequence typing breathes life into a microbial metagenome.	Mahenthiralingam E, Baldwin A, Drevinek P, Vanlaere E, Vandamme P, LiPuma JJ, Dowson CG.	PLoS One	10.1371/journal.pone.0000017	2006
Metabolism	Bacterial community dynamics during start-up of a trickle-bed bioreactor degrading aromatic compounds.	Stoffels M, Amann R, Ludwig W, Hekmat D, Schleifer KH.	Appl Environ Microbiol	10.1128/aem.64.3.930-939.1998	1998
	New variochelins from soil-isolated Variovorax sp. H002.	Haedar JR, Yoshimura A, Wakimoto T.	Beilstein J Org Chem	10.3762/bjoc.20.63	2024
Phylogeny	Burkholderia perseverans sp. nov., a bacterium isolated from the Restinga ecosystem, is a producer of volatile and diffusible compounds that inhibit plant pathogens.	Andrade JP, de Souza HG, Ferreira LC, Cnockaert M, De Canck E, Wieme AD, Peeters C, Gross E, De Souza JT, Marbach PAS, Goes-Neto A, Vandamme P	Braz J Microbiol	10.1007/s42770-021-00560-w	2021
Phylogeny	Paraburkholderia acidiphila sp. nov., Paraburkholderia acidisoli sp. nov. and Burkholderia guangdongensis sp. nov., isolated from forest soil, and reclassification of Burkholderia ultramafica as Paraburkholderia ultramafica comb. nov.	Gao ZH, Zhang QM, Lv YY, Wang YQ, Zhao BN, Qiu LH	Int J Syst Evol Microbiol	10.1099/ijsem.0.004690	2021

References

#3621	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9509
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the JMRC: Jena Microbial Resource Collection (JMRC):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#41941	; Curators of the CIP;
#47799	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 23368
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#121853	Collection of Institut Pasteur ; Curators of the CIP; CIP 105769
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Burkholderia plantarii (DSM 9509, ATCC 43733, ICMP 9424)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API zym

API 20NE

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001411805

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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