Name: Brucella pecoris 08RB2639
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1899

Type strain:

Species: Brucella pecoris

Strain Designation: 08RB2639

Culture col. no.: DSM 23868, CCM 7822, CCUG 60088

Strain history: <- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; 08RB2639 <- F. Melzer

NCBI tax ID(s): 867683 (species)

SI-ID 403622

DSM 23868, CCUG 60088

Other strains from Brucella pecoris

B. pecoris 08RB2781-1, DSM 23867, CCM 7823

Section

Brucella pecoris 08RB2639 is a mesophilic, Gram-negative, rod-shaped animal pathogen that was isolated from genitourinary lymph node of a sheep .

Gram-negative
rod-shaped
animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Brucellaceae*
	Genus	*Brucella*
	Species	**Brucella pecoris**
	Full Scientific Name (LPSN)	Brucella pecoris (Kämpfer et al. 2011) Hördt et al. 2020

Synonym

Ochrobactrum pecoris

Information on morphological and physiological properties Morphology

[Ref.: #23345]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.995

[Ref.: #23345]	Cell shape	rod-shaped

[Ref.: #23345]	Motility	no
[Ref.: #69480]	Motility	yes Confidence in %92.594

[Ref.: #17417]	Type of hemolysis	alpha/beta
[Ref.: #17417]	Hemolysis ability	1
[Ref.: #17417]	Incubation period	1-2 days

[Ref.: #23345]	Colony size	2 mm
[Ref.: #23345]	Colony color	beige, translucent
[Ref.: #23345]	Colony shape	circular
[Ref.: #23345]	Incubation period	1 day

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17417]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #17417]

Culture medium growth

[Ref.: #17417]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17417]

Culture medium composition

expand / minimize

[Ref.: #17417]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #17417]

Culture medium growth

[Ref.: #17417]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17417]

Culture medium composition

expand / minimize

[Ref.: #23345]

Culture medium

MacConkey

[Ref.: #23345]

Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #23345]

Culture medium growth

[Ref.: #23345]

Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #23345]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #17417]			growth	30 °C
[Ref.: #23345]			growth	25-30 °C

[Ref.: #17417]	Temperature range	mesophilic
[Ref.: #23345]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23345]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.992

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23345]	2-oxoglutarate ChEBI	+	assimilation
[Ref.: #23345]	3-hydroxybenzoate ChEBI	-
[Ref.: #23345]	4-nitrophenyl alpha-D-glucopyranoside ChEBI	-	hydrolysis
[Ref.: #23345]	4-nitrophenyl beta-D-galactopyranoside ChEBI	-	hydrolysis
[Ref.: #23345]	4-nitrophenyl beta-D-glucopyranoside ChEBI	-	hydrolysis
[Ref.: #23345]	4-nitrophenyl beta-D-glucuronide ChEBI	-	hydrolysis
[Ref.: #23345]	acetate ChEBI	+	assimilation
[Ref.: #23345]	adipate ChEBI	-
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #23345]	arbutin ChEBI	-
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #23345]	azelaate ChEBI	-
[Ref.: #23345]	beta-alanine ChEBI	+	assimilation
[Ref.: #23345]	bis-4-nitrophenyl-phenyl phosphonate ChEBI	+/-	hydrolysis
[Ref.: #23345]	bis-4-nitrophenyl-phosphorylcholine ChEBI	-	hydrolysis
[Ref.: #23345]	cellobiose ChEBI	+	assimilation
[Ref.: #23345]	cis-aconitate ChEBI	-
[Ref.: #23345]	citrate ChEBI	+/-	assimilation
[Ref.: #23345]	D-fructose ChEBI	+	assimilation
[Ref.: #23345]	D-galactose ChEBI	+	assimilation
[Ref.: #23345]	D-glucose ChEBI	+	assimilation
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #23345]	D-mannose ChEBI	+	assimilation
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #23345]	D-ribose ChEBI	+	assimilation
[Ref.: #23345]	D-sorbitol ChEBI	+	assimilation
[Ref.: #23345]	D-xylose ChEBI	+	assimilation
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #23345]	esculin ChEBI	-	hydrolysis
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #23345]	fumarate ChEBI	+	assimilation
[Ref.: #23345]	gamma-aminobutyric acid ChEBI	+	assimilation
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #23345]	glutaric acid ChEBI	+	assimilation
[Ref.: #23345]	itaconate ChEBI	-
[Ref.: #23345]	L-alanine ChEBI	+	assimilation
[Ref.: #23345]	L-alanine 4-nitroanilide	+	hydrolysis
[Ref.: #23345]	L-arabinose ChEBI	+	assimilation
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #23345]	L-aspartate ChEBI	+	assimilation
[Ref.: #23345]	L-histidine ChEBI	+	assimilation
[Ref.: #23345]	L-leucine ChEBI	+	assimilation
[Ref.: #23345]	L-malate ChEBI	+	assimilation
[Ref.: #23345]	L-phenylalanine ChEBI	-
[Ref.: #23345]	L-proline ChEBI	+	assimilation
[Ref.: #23345]	L-proline-4-nitroanilide	+/-	hydrolysis
[Ref.: #23345]	L-serine ChEBI	+	assimilation
[Ref.: #23345]	L-tryptophan ChEBI	-
[Ref.: #23345]	lactate ChEBI	+	assimilation
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #23345]	maltose ChEBI	+	assimilation
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #23345]	melibiose ChEBI	-
[Ref.: #23345]	mesaconate ChEBI	-
[Ref.: #23345]	myo-inositol ChEBI	+/-	assimilation
[Ref.: #23345]	N-acetylgalactosamine ChEBI	+	assimilation
[Ref.: #23345]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #23345]	ornithine ChEBI	+	assimilation
[Ref.: #23345]	p-nitrophenyl phenyl phosphonate ChEBI	+	hydrolysis
[Ref.: #23345]	phenylacetate ChEBI	-
[Ref.: #23345]	propionate ChEBI	+	assimilation
[Ref.: #23345]	putrescine ChEBI	-
[Ref.: #23345]	pyruvate ChEBI	+	assimilation
[Ref.: #23345]	rhamnose ChEBI	-
[Ref.: #23345]	ribitol ChEBI	+	assimilation
[Ref.: #23345]	salicin ChEBI	-
[Ref.: #23345]	suberic acid ChEBI	-
[Ref.: #23345]	sucrose ChEBI	+	assimilation
[Ref.: #23345]	trehalose ChEBI	+	assimilation
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	+	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #17417]	catalase	+	1.11.1.6
[Ref.: #23345]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #17417]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	+	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #17417]	23876	+	-	-	-	+	+	-	-	+	+	+	+	+	+	+	-	-	+	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17417]	Sample type/isolated from	genitourinary lymph node of a sheep (Ovis aries)
[Ref.: #17417]	Host species	Ovis aries
[Ref.: #17417]	Country	Bosnia and Herzegovina
[Ref.: #17417]	Country ISO 3 Code	BIH
[Ref.: #17417]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Caprinae (Sheep/Goat)
#Host Body-Site	#Urogenital tract	-
#Host Body-Site	#Organ	#Lymph node

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17417]	Pathogenicity (animal)	yes, in single cases
[Ref.: #17417]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17417]	Ochrobactrum pecoris partial 16S rRNA gene, type strain 08RB2639T	FR668302	1386	ENA	867683 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Brucella pecoris 08RB2639	GCA_006376675	contig	GenBank	867683 tax ID	*
[Ref.: #66792]	Brucella pecoris DSM 23868	GCA_014197065	scaffold	GenBank	867683 tax ID	*
[Ref.: #66792]	Brucella pecoris DSM 23868	GCA_012395285	contig	GenBank	867683 tax ID	*
[Ref.: #66792]	Ochrobactrum pecoris strain DSM 23868	867683.4	wgs	PATRIC	867683 tax ID	*
[Ref.: #66792]	Ochrobactrum pecoris strain DSM 23868	867683.5	wgs	PATRIC	867683 tax ID	*
[Ref.: #66792]	Brucella pecoris DSM 23868	2830083187	draft	JGI IMG/M	867683 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Ochrobactrum pecoris strain DSM 23868 PATRIC: 867683.5
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Brucella pecoris DSM 23868 NCBI: GCA_014197065.1
[Ref.: #69480]	flagellated	no	87.165	yes
[Ref.: #69480]	gram-positive	no	98.549	yes
[Ref.: #69480]	anaerobic	no	97.631	no
[Ref.: #69480]	aerobic	yes	89.882	no
[Ref.: #69480]	halophile	no	93.647	no
[Ref.: #69480]	spore-forming	no	96.264	yes
[Ref.: #69480]	glucose-util	yes	92.931	yes
[Ref.: #69480]	thermophile	no	99.017	yes
[Ref.: #69480]	glucose-ferment	no	91.671	yes
[Ref.: #69480]	motile	yes	79.516	yes

Availability in culture collections External links

[Ref.: #17417]

Culture collection no.

DSM 23868, CCM 7822, CCUG 60088

[Ref.: #71543]

SI-ID 403622

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Ochrobactrum teleogrylli sp. nov., a pesticide-degrading bacterium isolated from the insect Teleogryllus occipitalis living in deserted cropland.	Hu M, Li X, Li Z, Liu B, Yang Z, Tian Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.003964	2020	*
Phylogeny	Ochrobactrum pecoris sp. nov., isolated from farm animals.	Kampfer P, Huber B, Busse HJ, Scholz HC, Tomaso H, Hotzel H, Melzer F	Int J Syst Evol Microbiol	10.1099/ijs.0.027631-0	2010	*

References

#17417

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23868

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23345

Peter Kämpfer, Bettina Huber, Hans-Jürgen Busse, Holger C. Scholz, Herbert Tomaso, Helmut Hotzel, Falk Melzer: Ochrobactrum pecoris sp. nov., isolated from farm animals. IJSEM 61: 2278 - 2283 2011 ( DOI 10.1099/ijs.0.027631-0 , PubMed 20952542 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71543

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403622.1 )

* These data were automatically processed and therefore are not curated

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Ochrobactrum pecoris strain DSM 23868

Brucella pecoris DSM 23868

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