Name: Actinomyces dentalis R18165
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 189

Type strain:

Species: Actinomyces dentalis

Strain Designation: R18165

Culture col. no.: DSM 19115, CCUG 48064, CIP 108337, KCTC 15232

Strain history: CIP <- 2004, CCUG <- P. Lauson, UK: strain R18165 <- Val Hall, Cardif, UK

NCBI tax ID(s): 1120941 (strain), 272548 (species)

SI-ID 98873

CCUG 48064, CIP 108337, DSM 19115

Section

Actinomyces dentalis R18165 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from human dental abscess.

Gram-positive
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Actinomycetales*
	Family	*Actinomycetaceae*
	Genus	*Actinomyces*
	Species	**Actinomyces dentalis**
	Full Scientific Name (LPSN)	Actinomyces dentalis Hall et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #23123]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #118908]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #23123]	Cell shape	rod-shaped
[Ref.: #118908]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	filament-shaped

[Ref.: #23123]	Motility	no
[Ref.: #118908]	Motility	no
[Ref.: #67771]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %91.755

[Ref.: #23123]	Colony color	white
[Ref.: #23123]	Incubation period	2 days
[Ref.: #23123]	Cultivation medium used	Fastidious Anaerobe Agar with 5 % horse blood

[Ref.: #57970]	Incubation period	2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7902]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #7902]

Culture medium growth

[Ref.: #7902]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7902]

Culture medium composition

expand / minimize

[Ref.: #23123]

Culture medium

Fastidious Anaerobe
Agar with 5 % horse blood

[Ref.: #23123]

Culture medium growth

[Ref.: #33948]

Culture medium

MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and Neisseria

[Ref.: #33948]

Culture medium growth

[Ref.: #33948]

Culture medium composition

expand / minimize

[Ref.: #118908]

Culture medium

CIP Medium 10

[Ref.: #118908]

Culture medium growth

[Ref.: #118908]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #7902]		growth	37 °C
[Ref.: #33948]		growth	37 °C
[Ref.: #57970]		growth	37 °C
[Ref.: #67771]		growth	37 °C
[Ref.: #118908]	no	growth	41 °C
[Ref.: #118908]	no	growth	30 °C
[Ref.: #118908]	no	growth	25 °C
[Ref.: #118908]	no	growth	10 °C
[Ref.: #118908]	no	growth	5 °C
[Ref.: #118908]		growth	37 °C
[Ref.: #118908]	no	growth	45 °C

[Ref.: #7902]	Temperature range	mesophilic
[Ref.: #33948]	Temperature range	mesophilic
[Ref.: #57970]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic
[Ref.: #118908]	Temperature range	thermophilic
[Ref.: #118908]	Temperature range	mesophilic
[Ref.: #118908]	Temperature range	psychrophilic
[Ref.: #118908]	Temperature range	mesophilic
[Ref.: #118908]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7902]	Oxygen tolerance	anaerobe
[Ref.: #23123]	Oxygen tolerance	anaerobe
[Ref.: #57970]	Oxygen tolerance	anaerobe
[Ref.: #67771]	Oxygen tolerance	anaerobe
[Ref.: #118908]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %93.458

[Ref.: #23123]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %93
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.934

	Salt	Tested relation		Salt conc.
[Ref.: #118908]	NaCl	no	growth	0	%
[Ref.: #118908]	NaCl	no	growth	2	%
[Ref.: #118908]	NaCl	no	growth	4	%
[Ref.: #118908]	NaCl	no	growth	6	%
[Ref.: #118908]	NaCl	no	growth	8	%
[Ref.: #118908]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23123]	arabinose ChEBI	-	builds acid from
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #23123]	cellobiose ChEBI	+	builds acid from
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #118908]	citrate ChEBI	-	carbon source
[Ref.: #23123]	cyclodextrin ChEBI	-	builds acid from
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23123]	D-arabitol ChEBI	-	builds acid from
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68380]	D-mannose ChEBI	+	fermentation	* from API rID32A
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23123]	D-xylose ChEBI	-	builds acid from
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23123]	esculin ChEBI	+	hydrolysis
[Ref.: #118908]	esculin ChEBI	+	hydrolysis
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23123]	fructose ChEBI	+	builds acid from
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23123]	gelatin ChEBI	-	hydrolysis
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23123]	glucose ChEBI	+	builds acid from
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23123]	glycogen ChEBI	-	builds acid from
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23123]	hippurate ChEBI	-	hydrolysis
[Ref.: #118908]	hippurate ChEBI	+	hydrolysis
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23123]	L-arabinose ChEBI	-	builds acid from
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23123]	lactose ChEBI	-	builds acid from
[Ref.: #23123]	lactose ChEBI	+	builds acid from
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23123]	maltose ChEBI	+	builds acid from
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23123]	mannitol ChEBI	-	builds acid from
[Ref.: #23123]	mannose ChEBI	+	builds acid from
[Ref.: #23123]	melezitose ChEBI	-	builds acid from
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23123]	melibiose ChEBI	+	builds acid from
[Ref.: #68371]	melibiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23123]	methyl beta-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23123]	nitrate ChEBI	-	reduction
[Ref.: #118908]	nitrate ChEBI	-	reduction
[Ref.: #118908]	nitrate ChEBI	+	respiration
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #118908]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23123]	pullulan ChEBI	-	builds acid from
[Ref.: #23123]	raffinose ChEBI	+	builds acid from
[Ref.: #68371]	raffinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68380]	raffinose ChEBI	+	fermentation	* from API rID32A
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23123]	ribose ChEBI	-	builds acid from
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23123]	sorbitol ChEBI	-	builds acid from
[Ref.: #23123]	starch ChEBI	-	hydrolysis
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23123]	sucrose ChEBI	+	builds acid from
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23123]	tagatose ChEBI	-	builds acid from
[Ref.: #23123]	trehalose ChEBI	+	builds acid from
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #118908]	tributyrin ChEBI	+	hydrolysis
[Ref.: #23123]	tryptophan ChEBI	-	energy source
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68371]	turanose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23123]	urea ChEBI	-	hydrolysis
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23123]	xylose ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #118908]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite	Production
[Ref.: #23123]	acetoin ChEBI	no
[Ref.: #23123]	indole ChEBI	no
[Ref.: #118908]	indole ChEBI	no
[Ref.: #68380]	indole ChEBI	no	* from API rID32A

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #23123]	acetoin ChEBI	-
[Ref.: #118908]	acetoin ChEBI	-
[Ref.: #118908]	glucose ChEBI		-
[Ref.: #23123]	indole ChEBI			-
[Ref.: #68380]	indole ChEBI			-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #23123]	6-phospho-beta-galactosidase	-	3.2.1.85
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #23123]	alanine arylamidase	+	3.4.11.2
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #118908]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #23123]	alkaline phosphatase	-	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym, API rID32A
[Ref.: #23123]	alpha-arabinosidase	-	3.2.1.55
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #23123]	alpha-fucosidase	-	3.2.1.51
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym, API rID32A
[Ref.: #23123]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym, API rID32A
[Ref.: #23123]	alpha-glucosidase	+	3.2.1.20
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API rID32A
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #118908]	amylase	-
[Ref.: #23123]	arginine dihydrolase	-	3.5.3.6
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #23123]	beta-galactosidase	+/-	3.2.1.23
[Ref.: #118908]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #23123]	beta-glucosidase	+	3.2.1.21
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym, API rID32A
[Ref.: #23123]	beta-glucuronidase	-	3.2.1.31
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API rID32A
[Ref.: #23123]	beta-mannosidase	-	3.2.1.25
[Ref.: #118908]	caseinase	-	3.4.21.50
[Ref.: #118908]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #118908]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #118908]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #118908]	gelatinase	-
[Ref.: #23123]	glutamate decarboxylase	-	4.1.1.15
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #23123]	glutamyl-glutamate arylamidase	-
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #23123]	glycyl tryptophan arylamidase	-
[Ref.: #23123]	histidine arylamidase	+
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #23123]	L-arginine arylamidase	+
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #118908]	lecithinase	+
[Ref.: #23123]	leucine arylamidase	+	3.4.11.1
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym, API rID32A
[Ref.: #23123]	leucyl glycin arylamidase	+	3.4.11.1
[Ref.: #23123]	leucyl glycin arylamidase	-	3.4.11.1
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #118908]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #118908]	lysine decarboxylase	-	4.1.1.18
[Ref.: #23123]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API rID32A
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #118908]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #118908]	oxidase	-
[Ref.: #118908]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68380]	phenylalanine arylamidase	+		* from API rID32A
[Ref.: #23123]	phenylalanine deaminase	+	4.3.1.5
[Ref.: #23123]	proline-arylamidase	+	3.4.11.5
[Ref.: #68380]	proline-arylamidase	+	3.4.11.5	* from API rID32A
[Ref.: #118908]	protease	-
[Ref.: #23123]	pyrazinamidase	-	3.5.1.B15
[Ref.: #23123]	pyroglutamic acid arylamidase	-
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #23123]	serine arylamidase	-
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #23123]	tripeptide aminopeptidase	-	3.4.11.4
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #23123]	tryptophan deaminase	-	4.1.99.1
[Ref.: #118908]	tryptophan deaminase	-
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #118908]	tween esterase	-
[Ref.: #23123]	tyrosine arylamidase	-
[Ref.: #68380]	tyrosine arylamidase	+		* from API rID32A
[Ref.: #23123]	urease	-	3.5.1.5
[Ref.: #118908]	urease	-	3.5.1.5
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #118908]	11269	not determinedn.d.	-	-	-	-	-	-	-	-	-	+	+	-	+	-	-	-	-	-	-	-	-	-	+	-	+	-	+	-	-	+	+	+	-	-	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #7902]	12672	-	-	+	+	-	+	+	-	-	-	+	+	-	-	-	-	-	-	+	-	+	+	-	+	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #118908]	11101	-	-	+	-	-	+	-	-	-	-	-	-	+	+	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7902]	Sample type/isolated from	human dental abscess
[Ref.: #7902]	Geographic location (country and/or sea, region)	Edinburgh
[Ref.: #7902]	Country	United Kingdom
[Ref.: #7902]	Country ISO 3 Code	GBR
[Ref.: #7902]	Continent	Europe

[Ref.: #23123]	Sample type/isolated from	pus of a dental abscess from a 72-year-old female with facial swelling
[Ref.: #23123]	Sampling date	2003

[Ref.: #57970]	Sample type/isolated from	Human dental abscess,72-yr-old woman
[Ref.: #57970]	Sampling date	2003
[Ref.: #57970]	Geographic location (country and/or sea, region)	Edinburgh
[Ref.: #57970]	Country	United Kingdom
[Ref.: #57970]	Country ISO 3 Code	GBR
[Ref.: #57970]	Continent	Europe

[Ref.: #67771]	Sample type/isolated from	From human dental abscess, 72-yr-old woman
[Ref.: #67771]	Country	United Kingdom
[Ref.: #67771]	Country ISO 3 Code	GBR
[Ref.: #67771]	Continent	Europe

[Ref.: #118908]	Sample type/isolated from	Human, Dental abscess
[Ref.: #118908]	Geographic location (country and/or sea, region)	Edinburgh, Scotland
[Ref.: #118908]	Country	United Kingdom
[Ref.: #118908]	Country ISO 3 Code	GBR
[Ref.: #118908]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Infection	#Patient	-
#Host Body-Site	#Oral cavity and airways	#Tooth
#Host Body-Site	#Other	#Abscess
#Host Body Product	#Fluids	-
#Host	#Human	#Female

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ697609 (>99% sequence identity) for Actinomyces dentalis subclade from Microbeatlas

Aquatic Samples	501
Soil Samples	306
Animal Samples	17456
Plant Samples	144
Total Samples	18407

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7902]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #118908]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7902]	Actinomyces sp. R18165 16S rRNA gene, type strain R18165	AJ697609	1517	ENA	272548 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67771]	Actinomyces dentalis DSM 19115	GCA_000429225	scaffold	GenBank	1120941 tax ID
[Ref.: #66792]	Actinomyces dentalis DSM 19115	1120941.3	wgs	PATRIC	1120941 tax ID	*
[Ref.: #66792]	Actinomyces dentalis DSM 19115	2523533597	draft	JGI IMG/M	1120941 tax ID	*

[Ref.: #7902]	GC-content	62 mol%
[Ref.: #23123]	GC-content	62.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	62.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinomyces dentalis DSM 19115 DSM 19115 NCBI: GCA_000429225.1
[Ref.: #69481]	spore-forming	no	93	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinomyces dentalis DSM 19115 PATRIC: 1120941.3
[Ref.: #69480]	motile	no	92.662	no
[Ref.: #69480]	flagellated	no	97.454	yes
[Ref.: #69480]	gram-positive	yes	96.72	yes
[Ref.: #69480]	anaerobic	no	61.608	no
[Ref.: #69480]	aerobic	no	95.869	no
[Ref.: #69480]	halophile	no	80.522	no
[Ref.: #69480]	spore-forming	no	91.351	yes
[Ref.: #69480]	glucose-util	yes	88.999	no
[Ref.: #69480]	thermophile	no	80.989	yes
[Ref.: #69480]	glucose-ferment	yes	80.112	no

Availability in culture collections External links

[Ref.: #7902]

Culture collection no.

DSM 19115, CCUG 48064, CIP 108337, KCTC 15232

[Ref.: #69871]

SI-ID 98873

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomyces dentalis sp. nov., from a human dental abscess.	Hall V, Collins MD, Lawson PA, Falsen E, Duerden BI	Int J Syst Evol Microbiol	10.1099/ijs.0.63376-0	2005	*

References

#7902

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19115

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23123

Val Hall, Matthew D. Collins, Paul A. Lawson, Enevold Falsen, Brian I. Duerden: Actinomyces dentalis sp. nov., from a human dental abscess. IJSEM 55: 427 - 431 2005 ( DOI 10.1099/ijs.0.63376-0 , PubMed 15653913 )

#33948 ; Curators of the CIP;
#57970 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 48064

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68371

Automatically annotated from API 50CH acid .

#68380

Automatically annotated from API rID32A .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69871

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID98873.1 )

#118908 Collection of Institut Pasteur ; Curators of the CIP; CIP 108337
* These data were automatically processed and therefore are not curated

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Actinomyces dentalis DSM 19115 DSM 19115

Actinomyces dentalis DSM 19115

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