Name: Bowdeniella nasicola R2014
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 188

Type strain:

Species: Bowdeniella nasicola

Strain Designation: R2014

Culture col. no.: DSM 19116, CCUG 46092, CIP 107668

Strain history: CIP <- 2002, CCUG <- Val Hall UK, Cardiff, PHLS: strain R2014

NCBI tax ID(s): 208480 (species)

SI-ID 97622

CCUG 46092, CIP 107668, DSM 19116

Section

Bowdeniella nasicola R2014 is an anaerobe, mesophilic, Gram-positive human pathogen that was isolated from human anthral washout.

Gram-positive
rod-shaped
anaerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Actinomycetales*
	Family	*Actinomycetaceae*
	Genus	*Bowdeniella*
	Species	**Bowdeniella nasicola**
	Full Scientific Name (LPSN)	Bowdeniella nasicola corrig. (Hall et al. 2003) Nouioui et al. 2018

	Synonym	Bowdenia nasicola
	Synonym	Actinomyces nasicola

Information on morphological and physiological properties Morphology

[Ref.: #23122]	Gram stain	positive
[Ref.: #121236]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #23122]	Cell shape	rod-shaped
[Ref.: #121236]	Cell shape	rod-shaped

[Ref.: #121236]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90.624

[Ref.: #121236]	Hemolysis ability	1

[Ref.: #23122]	Colony color	white or grey
[Ref.: #23122]	Incubation period	2 days
[Ref.: #23122]	Cultivation medium used	fastidious anaerobe agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7915]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #7915]

Culture medium growth

[Ref.: #7915]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7915]

Culture medium composition

expand / minimize

[Ref.: #23122]

Culture medium

fastidious anaerobe agar

[Ref.: #23122]

Culture medium growth

[Ref.: #33855]

Culture medium

MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and Neisseria

[Ref.: #33855]

Culture medium growth

[Ref.: #33855]

Culture medium composition

expand / minimize

[Ref.: #121236]

Culture medium

CIP Medium 10

[Ref.: #121236]

Culture medium growth

[Ref.: #121236]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #7915]		growth	37 °C
[Ref.: #33855]		growth	37 °C
[Ref.: #57055]		growth	37 °C
[Ref.: #121236]		growth	25-41 °C
[Ref.: #121236]	no	growth	10 °C
[Ref.: #121236]	no	growth	45 °C

[Ref.: #7915]	Temperature range	mesophilic
[Ref.: #33855]	Temperature range	mesophilic
[Ref.: #57055]	Temperature range	mesophilic
[Ref.: #121236]	Temperature range	psychrophilic
[Ref.: #121236]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7915]	Oxygen tolerance	anaerobe
[Ref.: #23122]	Oxygen tolerance	facultative anaerobe
[Ref.: #57055]	Oxygen tolerance	microaerophile
[Ref.: #121236]	Oxygen tolerance	facultative anaerobe

[Ref.: #23122]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.995

	Salt	Tested relation		Salt conc.
[Ref.: #121236]	NaCl		growth	0-4	%
[Ref.: #121236]	NaCl	no	growth	6	%
[Ref.: #121236]	NaCl	no	growth	8	%
[Ref.: #121236]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23122]	amygdalin ChEBI	-	builds acid from
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23122]	arabinose ChEBI	-	builds acid from
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #23122]	cellobiose ChEBI	+	builds acid from
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #121236]	citrate ChEBI	-	carbon source
[Ref.: #23122]	cyclodextrin ChEBI	-	builds acid from
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23122]	D-arabitol ChEBI	-	builds acid from
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23122]	D-xylose ChEBI	-	builds acid from
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23122]	esculin ChEBI	-	hydrolysis
[Ref.: #121236]	esculin ChEBI	+	hydrolysis
[Ref.: #23122]	fructose ChEBI	+	builds acid from
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23122]	gelatin ChEBI	-	hydrolysis
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23122]	glucose ChEBI	-	builds acid from
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23122]	glycogen ChEBI	-	builds acid from
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23122]	hippurate ChEBI	-	hydrolysis
[Ref.: #121236]	hippurate ChEBI	+	hydrolysis
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23122]	L-arabinose ChEBI	-	builds acid from
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68380]	L-glutamate ChEBI	+	degradation	* from API rID32A
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23122]	lactose ChEBI	-	builds acid from
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23122]	maltose ChEBI	-	builds acid from
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23122]	mannitol ChEBI	-	builds acid from
[Ref.: #23122]	mannose ChEBI	-	builds acid from
[Ref.: #23122]	melezitose ChEBI	-	builds acid from
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23122]	melibiose ChEBI	-	builds acid from
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23122]	methyl beta-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23122]	nitrate ChEBI	-	reduction
[Ref.: #121236]	nitrate ChEBI	-	reduction
[Ref.: #121236]	nitrate ChEBI	+	respiration
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #121236]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23122]	pullulan ChEBI	-	builds acid from
[Ref.: #23122]	raffinose ChEBI	-	builds acid from
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23122]	ribose ChEBI	-	builds acid from
[Ref.: #23122]	salicin ChEBI	-	builds acid from
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23122]	sorbitol ChEBI	-	builds acid from
[Ref.: #23122]	starch ChEBI	-	hydrolysis
[Ref.: #68371]	starch ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23122]	sucrose ChEBI	-	builds acid from
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23122]	tagatose ChEBI	-	builds acid from
[Ref.: #23122]	trehalose ChEBI	-	builds acid from
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23122]	tryptophan ChEBI	-	energy source
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68371]	turanose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23122]	xylose ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #23122]	acetoin ChEBI	no
[Ref.: #23122]	indole ChEBI	no
[Ref.: #121236]	indole ChEBI	no
[Ref.: #68380]	indole ChEBI	no	* from API rID32A

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #23122]	acetoin ChEBI	-
[Ref.: #121236]	acetoin ChEBI	-
[Ref.: #121236]	glucose ChEBI		-
[Ref.: #23122]	indole ChEBI			-
[Ref.: #68380]	indole ChEBI			-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #23122]	6-phospho-beta-galactosidase	+	3.2.1.85
[Ref.: #23122]	6-phospho-beta-galactosidase	-	3.2.1.85
[Ref.: #23122]	acid phosphatase	-	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #23122]	alanine arylamidase	+	3.4.11.2
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #121236]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #23122]	alkaline phosphatase	-	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym, API rID32A
[Ref.: #23122]	alpha-arabinosidase	-	3.2.1.55
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #23122]	alpha-fucosidase	-	3.2.1.51
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym, API rID32A
[Ref.: #23122]	alpha-galactosidase	-	3.2.1.22
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym, API rID32A
[Ref.: #23122]	alpha-glucosidase	+	3.2.1.20
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API rID32A
[Ref.: #23122]	alpha-mannosidase	-	3.2.1.24
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #121236]	amylase	+
[Ref.: #23122]	arginine dihydrolase	+/-	3.5.3.6
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #121236]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #23122]	beta-glucosidase	+/-	3.2.1.21
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym, API rID32A
[Ref.: #23122]	beta-glucuronidase	-	3.2.1.31
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API rID32A
[Ref.: #23122]	beta-mannosidase	-	3.2.1.25
[Ref.: #121236]	caseinase	-	3.4.21.50
[Ref.: #23122]	catalase	-	1.11.1.6
[Ref.: #121236]	catalase	-	1.11.1.6
[Ref.: #23122]	chymotrypsin	-	3.4.4.5
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #121236]	DNase	-
[Ref.: #23122]	esterase (C 4)	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #23122]	esterase lipase (C 8)	-
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #121236]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #121236]	gelatinase	-
[Ref.: #23122]	glutamate decarboxylase	-	4.1.1.15
[Ref.: #68380]	glutamate decarboxylase	+	4.1.1.15	* from API rID32A
[Ref.: #23122]	glutamyl-glutamate arylamidase	+/-
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #23122]	glycin arylamidase	+
[Ref.: #68380]	glycin arylamidase	+		* from API rID32A
[Ref.: #23122]	glycyl tryptophan arylamidase	-
[Ref.: #23122]	histidine arylamidase	+
[Ref.: #23122]	L-arginine arylamidase	+
[Ref.: #68380]	L-arginine arylamidase	+		* from API rID32A
[Ref.: #23122]	lecithinase	-
[Ref.: #121236]	lecithinase	-
[Ref.: #23122]	leucine arylamidase	+	3.4.11.1
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym, API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #23122]	lipase	-
[Ref.: #121236]	lipase	-
[Ref.: #23122]	lipase (C 14)	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #121236]	lysine decarboxylase	-	4.1.1.18
[Ref.: #23122]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym, API rID32A
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121236]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #121236]	oxidase	+
[Ref.: #121236]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68380]	phenylalanine arylamidase	+		* from API rID32A
[Ref.: #23122]	phosphoamidase	-	3.9.1.1
[Ref.: #23122]	proline-arylamidase	+	3.4.11.5
[Ref.: #68380]	proline-arylamidase	+	3.4.11.5	* from API rID32A
[Ref.: #121236]	protease	-
[Ref.: #23122]	pyroglutamic acid arylamidase	+/-
[Ref.: #23122]	pyrrolidonyl arylamidase	-	3.4.19.3
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #23122]	serine arylamidase	+
[Ref.: #23122]	tripeptide aminopeptidase	+	3.4.11.4
[Ref.: #23122]	trypsin	-	3.4.21.4
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #23122]	tryptophan deaminase	-	4.1.99.1
[Ref.: #121236]	tryptophan deaminase	-
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #121236]	tween esterase	+
[Ref.: #23122]	tyrosine arylamidase	+
[Ref.: #68380]	tyrosine arylamidase	+		* from API rID32A
[Ref.: #23122]	urease	-	3.5.1.5
[Ref.: #121236]	urease	-	3.5.1.5
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
[Ref.: #23122]	valine arylamidase	+
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #121236]	11080	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	+	+/-	-	+	-	-	+/-	-	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-	-	-	-

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #7915]	12673	-	-	-	+	-	+	+	-	-	+	+/-	-	+	-	-	-	-	+	+	-	+	+	-	+	+	+	+/-	-	+/-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121236]	10551	-	-	+	+	-	+	+	-	-	-	+	+	-	+	-	+	+	+	+	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	lipoate biosynthesis	80	4 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	80	4 of 5
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	peptidoglycan biosynthesis	73.33	11 of 15
[Ref.: #66794]	metabolism of disaccharids	72.73	8 of 11
[Ref.: #66794]	NAD metabolism	72.22	13 of 18
[Ref.: #66794]	tetrahydrofolate metabolism	71.43	10 of 14
[Ref.: #66794]	photosynthesis	71.43	10 of 14
[Ref.: #66794]	myo-inositol biosynthesis	70	7 of 10
[Ref.: #66794]	phenylalanine metabolism	69.23	9 of 13
[Ref.: #66794]	histidine metabolism	68.97	20 of 29
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	aspartate and asparagine metabolism	66.67	6 of 9
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	3-phenylpropionate degradation	66.67	10 of 15
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	CO2 fixation in Crenarchaeota	66.67	6 of 9
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	purine metabolism	64.89	61 of 94
[Ref.: #66794]	oxidative phosphorylation	63.74	58 of 91
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	62.5	5 of 8
[Ref.: #66794]	isoleucine metabolism	62.5	5 of 8
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	pyrimidine metabolism	62.22	28 of 45
[Ref.: #66794]	glycine metabolism	60	6 of 10
[Ref.: #66794]	4-hydroxyphenylacetate degradation	60	6 of 10
[Ref.: #66794]	glycolysis	58.82	10 of 17
[Ref.: #66794]	alanine metabolism	58.62	17 of 29
[Ref.: #66794]	isoprenoid biosynthesis	57.69	15 of 26
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	glutamate and glutamine metabolism	57.14	16 of 28
[Ref.: #66794]	non-pathway related	55.26	21 of 38
[Ref.: #66794]	lipid metabolism	54.84	17 of 31
[Ref.: #66794]	proline metabolism	54.55	6 of 11
[Ref.: #66794]	arginine metabolism	54.17	13 of 24
[Ref.: #66794]	leucine metabolism	53.85	7 of 13
[Ref.: #66794]	tryptophan metabolism	52.63	20 of 38
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	heme metabolism	50	7 of 14
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	Entner Doudoroff pathway	50	5 of 10
[Ref.: #66794]	biotin biosynthesis	50	2 of 4
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	citric acid cycle	50	7 of 14
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	adipate degradation	50	1 of 2
[Ref.: #66794]	suberin monomers biosynthesis	50	1 of 2
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	sphingosine metabolism	50	3 of 6
[Ref.: #66794]	flavin biosynthesis	46.67	7 of 15
[Ref.: #66794]	urea cycle	46.15	6 of 13
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	phenol degradation	45	9 of 20
[Ref.: #66794]	cysteine metabolism	44.44	8 of 18
[Ref.: #66794]	cardiolipin biosynthesis	42.86	3 of 7
[Ref.: #66794]	degradation of pentoses	42.86	12 of 28
[Ref.: #66794]	glutathione metabolism	42.86	6 of 14
[Ref.: #66794]	propanol degradation	42.86	3 of 7
[Ref.: #66794]	tyrosine metabolism	42.86	6 of 14
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
[Ref.: #66794]	lysine metabolism	40.48	17 of 42
[Ref.: #66794]	propionate fermentation	40	4 of 10
[Ref.: #66794]	O-antigen biosynthesis	40	2 of 5
[Ref.: #66794]	cellulose degradation	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	gallate degradation	40	2 of 5
[Ref.: #66794]	degradation of hexoses	38.89	7 of 18
[Ref.: #66794]	d-xylose degradation	36.36	4 of 11
[Ref.: #66794]	methionine metabolism	34.62	9 of 26
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	androgen and estrogen metabolism	31.25	5 of 16
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	29.41	5 of 17
[Ref.: #66794]	aclacinomycin biosynthesis	28.57	2 of 7
[Ref.: #66794]	mevalonate metabolism	28.57	2 of 7
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	degradation of sugar alcohols	25	4 of 16
[Ref.: #66794]	dTDPLrhamnose biosynthesis	25	2 of 8
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	sulfate reduction	23.08	3 of 13
[Ref.: #66794]	ascorbate metabolism	22.73	5 of 22
[Ref.: #66794]	nitrate assimilation	22.22	2 of 9
[Ref.: #66794]	allantoin degradation	22.22	2 of 9
[Ref.: #66794]	lipid A biosynthesis	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7915]	Sample type/isolated from	human anthral washout
[Ref.: #7915]	Geographic location (country and/or sea, region)	Cardiff; PHLS
[Ref.: #7915]	Country	United Kingdom
[Ref.: #7915]	Country ISO 3 Code	GBR
[Ref.: #7915]	Continent	Europe

[Ref.: #23122]	Sample type/isolated from	81-year-old male patient admitted for routine nasal polypectomy

[Ref.: #57055]	Sample type/isolated from	Human antral washout,81-yr-old male
[Ref.: #57055]	Sampling date	1985
[Ref.: #57055]	Geographic location (country and/or sea, region)	Liverpool
[Ref.: #57055]	Country	United Kingdom
[Ref.: #57055]	Country ISO 3 Code	GBR
[Ref.: #57055]	Continent	Europe

[Ref.: #121236]	Sample type/isolated from	Human, Antral washout
[Ref.: #121236]	Geographic location (country and/or sea, region)	Liverpool
[Ref.: #121236]	Country	United Kingdom
[Ref.: #121236]	Country ISO 3 Code	GBR
[Ref.: #121236]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host	#Human	#Male

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ508455 (>99% sequence identity) for Bowdeniella nasicola subclade from Microbeatlas

Aquatic Samples	314
Soil Samples	525
Animal Samples	1884
Plant Samples	92
Total Samples	2815

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7915]	Pathogenicity (human)	yes, in single cases
[Ref.: #7915]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121236]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7915]	Actinomyces nasicol partial 16S rRNA gene, strain CCUG 46092	AJ508455	1475	ENA	208480 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bowdeniella nasicola DSM 19116	GCA_001907295	scaffold	GenBank	208480 tax ID	*
[Ref.: #66792]	Actinomyces nasicola strain DSM 19116	208480.4	wgs	PATRIC	208480 tax ID	*
[Ref.: #66792]	Actinomyces nasicola DSM 19116	2855319728	draft	JGI IMG/M	208480 tax ID	*

[Ref.: #7915]	GC-content	66.5 mol%
[Ref.: #23122]	GC-content	66.5 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bowdeniella nasicola DSM 19116 NCBI: GCA_001907295.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bowdeniella nasicola DSM 19116 NCBI: GCA_001907295.1
[Ref.: #69480]	flagellated	no	97.976	no
[Ref.: #69480]	gram-positive	yes	92.467	yes
[Ref.: #69480]	anaerobic	no	93.302	no
[Ref.: #69480]	halophile	no	79.05	no
[Ref.: #69480]	spore-forming	no	95.011	yes
[Ref.: #69480]	thermophile	no	94.944	yes
[Ref.: #69480]	glucose-util	yes	83.714	no
[Ref.: #69480]	aerobic	no	82.134	yes
[Ref.: #69480]	motile	no	91.302	no
[Ref.: #69480]	glucose-ferment	no	55.672	no

Availability in culture collections External links

[Ref.: #7915]

Culture collection no.

DSM 19116, CCUG 46092, CIP 107668

[Ref.: #69870]

SI-ID 97622

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nanchangia anserum gen. nov., sp. nov., isolated from feces of greater white-fronted geese (Anser albifrons).	Liu Q, Xue L, Wu K, Fan G, Bai X, Yang X, Cao L, Sun H, Song W, Pan Y, Chen S, Xiong Y, Chen H	Int J Syst Evol Microbiol	10.1099/ijsem.0.004978	2021	*
Phylogeny	Actinomyces nasicola sp. nov., isolated from a human nose.	Hall V, Collins MD, Lawson PA, Falsen E, Duerden BI	Int J Syst Evol Microbiol	10.1099/ijs.0.02582-0	2003	*

References

#7915

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19116

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23122

Val Hall, Matthew D. Collins, Paul A. Lawson, Enevold Falsen, Brian I. Duerden: Actinomyces nasicola sp. nov., isolated from a human nose. IJSEM 53: 1445 - 1448 2003 ( DOI 10.1099/ijs.0.02582-0 , PubMed 13130031 )

#33855 ; Curators of the CIP;
#57055 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 46092

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#68371

Automatically annotated from API 50CH acid .

#68380

Automatically annotated from API rID32A .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69870

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID97622.1 )

#121236 Collection of Institut Pasteur ; Curators of the CIP; CIP 107668
* These data were automatically processed and therefore are not curated

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Bowdeniella nasicola DSM 19116

Bowdeniella nasicola DSM 19116

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