Actinomyces oricola (KCTC 15234, DSM 17234, CCUG 46090)

Name: Actinomyces oricola (KCTC 15234, DSM 17234, CCUG 46090)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 187

Type strain

Strain Designation R5292

Culture col. no. KCTC 15234 DSM 17234 CCUG 46090 CIP 107639 Hall R5292 2 more

NCBI tax ID(s) 206043

Special Collections DSMZ CCUG JCM KCTC CIP Literature strains

History <- CCUG <- V.Hall, PHLS, R5292 CCUG 46090 <-- V. Hall R5292. <- CCUG <- V Hall, PHLS, R5292 CIP <- 2002, CCUG <- V. Hall, PHLS, Cardiff, UK: strain R5292

Links

Actinomyces oricola R5292 is an anaerobe, Gram-positive, rod-shaped bacterium that was isolated from human, dental abscess.

Gram-positive rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 19447

KCTC 15234,CCUG 46090,CIP 107639,DSM 17234,JCM 17565

@ref 20215

Last LPSN update 2026-02-09 11:17:49

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Actinomycetales

Family Actinomycetaceae

Genus Actinomyces

Species Actinomyces oricola

Full scientific name Actinomyces oricola Hall et al. 2003

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
23121	positive	rod-shaped
67771		rod-shaped
67771	positive
121434	positive	rod-shaped
125439	positive		96.6

Colony morphology

@ref	Type of hemolysis	Colony color	Incubation period	Medium used
23121	gamma	white	2 days	Fastidious Anaerobe Agar with 5 % horse blood
121434

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6830	PYG MEDIUM (MODIFIED) (DSMZ Medium 104)	Medium recipe at MediaDive	Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
6830	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
23121	Fastidious Anaerobe Agar with 5 % horse blood
38219	MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and Neisseria		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);PolyVitex mischung (10.000 ml)
121434	CIP Medium 10	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
6830	positive	growth	37
38219	positive	growth	37
57053	positive	growth	37
67770	positive	growth	37
67771	positive	growth	37
121434	positive	growth	30-37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
6830	anaerobe
23121	facultative anaerobe
57053	anaerobe
67771	anaerobe

Spore formation

@ref	Spore formation
23121
67771

Halophily

@ref	Salt	Growth	Tested relation	Concentration
121434	NaCl	positive	growth	0 %
121434	NaCl		growth	2 %
121434	NaCl		growth	4 %
121434	NaCl		growth	6 %
121434	NaCl		growth	8 %
121434	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68381	40585 ChEBI	alpha-cyclodextrin	-	builds acid from	from API rID32STR
23121	27613 ChEBI	amygdalin	+	builds acid from
68371	27613 ChEBI	amygdalin	+	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68381	29016 ChEBI	arginine	-	hydrolysis	from API rID32STR
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
23121	17057 ChEBI	cellobiose	+	builds acid from
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
23121	23456 ChEBI	cyclodextrin	-	builds acid from
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
23121	18333 ChEBI	D-arabitol	-	builds acid from
68381	18333 ChEBI	D-arabitol	-	builds acid from	from API rID32STR
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68381	16899 ChEBI	D-mannitol	-	builds acid from	from API rID32STR
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
23121	16988 ChEBI	D-ribose	-	builds acid from
68381	16988 ChEBI	D-ribose	-	builds acid from	from API rID32STR
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68381	16443 ChEBI	D-tagatose	-	builds acid from	from API rID32STR
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
23121	65327 ChEBI	D-xylose	-	builds acid from
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
23121	4853 ChEBI	esculin	+	hydrolysis
121434	4853 ChEBI	esculin	+	hydrolysis
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
23121	28757 ChEBI	fructose	+	builds acid from
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
23121	5291 ChEBI	gelatin	-	hydrolysis
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
23121	17234 ChEBI	glucose	+	builds acid from
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
23121	28087 ChEBI	glycogen	-	builds acid from
68381	28087 ChEBI	glycogen	-	builds acid from	from API rID32STR
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
23121	606565 ChEBI	hippurate	-	hydrolysis
68381	606565 ChEBI	hippurate	-	hydrolysis	from API rID32STR
121434	606565 ChEBI	hippurate	+	hydrolysis
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
23121	30849 ChEBI	L-arabinose	-	builds acid from
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68381	30849 ChEBI	L-arabinose	-	builds acid from	from API rID32STR
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
23121	17716 ChEBI	lactose	-	builds acid from
68381	17716 ChEBI	lactose	-	builds acid from	from API rID32STR
23121	17306 ChEBI	maltose	+/-	builds acid from
68381	17306 ChEBI	maltose	-	builds acid from	from API rID32STR
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
23121	29864 ChEBI	mannitol	-	builds acid from
23121	6731 ChEBI	melezitose	-	builds acid from
68381	6731 ChEBI	melezitose	-	builds acid from	from API rID32STR
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
23121	28053 ChEBI	melibiose	-	builds acid from
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68381	28053 ChEBI	melibiose	-	builds acid from	from API rID32STR
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
23121	320055 ChEBI	methyl beta-D-glucopyranoside	-	builds acid from
68381	320055 ChEBI	methyl beta-D-glucopyranoside	-	builds acid from	from API rID32STR
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
23121	17632 ChEBI	nitrate	-	reduction
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
121434	17632 ChEBI	nitrate	-	reduction
121434	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
23121	27941 ChEBI	pullulan	-	builds acid from
68381	27941 ChEBI	pullulan	-	builds acid from	from API rID32STR
23121	16634 ChEBI	raffinose	+	builds acid from
23121	16634 ChEBI	raffinose	+/-	builds acid from
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68381	16634 ChEBI	raffinose	-	builds acid from	from API rID32STR
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
23121	17814 ChEBI	salicin	+	builds acid from
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
23121	30911 ChEBI	sorbitol	-	builds acid from
68381	30911 ChEBI	sorbitol	-	builds acid from	from API rID32STR
23121	28017 ChEBI	starch	-	hydrolysis
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
23121	17992 ChEBI	sucrose	+	builds acid from
23121	17992 ChEBI	sucrose	+/-	builds acid from
68381	17992 ChEBI	sucrose	-	builds acid from	from API rID32STR
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
23121	33954 ChEBI	tagatose	-	builds acid from
23121	27082 ChEBI	trehalose	-	builds acid from
23121	27082 ChEBI	trehalose	+	builds acid from
68381	27082 ChEBI	trehalose	-	builds acid from	from API rID32STR
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
23121	27897 ChEBI	tryptophan	-	energy source
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68381	16199 ChEBI	urea	-	hydrolysis	from API rID32STR
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite
23121	15688 ChEBI	acetoin
68381	15688 ChEBI	acetoin	from API rID32STR
23121	35581 ChEBI	indole
68380	35581 ChEBI	indole	from API rID32A
121434	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
23121	15688 ChEBI	acetoin	-
68381	15688 ChEBI	acetoin	-			from API rID32STR
121434	15688 ChEBI	acetoin	-
121434	17234 ChEBI	glucose		-
23121	35581 ChEBI	indole			-
68380	35581 ChEBI	indole			-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
23121	6-phospho-beta-galactosidase	-	3.2.1.85
68382	acid phosphatase	-	3.1.3.2	from API zym
23121	alanine arylamidase	+	3.4.11.2
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68381	Alanyl-Phenylalanyl-Proline arylamidase	-		from API rID32STR
121434	alcohol dehydrogenase	-	1.1.1.1
23121	alkaline phosphatase	+/-	3.1.3.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68381	alkaline phosphatase	-	3.1.3.1	from API rID32STR
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
23121	alpha-arabinosidase	-	3.2.1.55
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
23121	alpha-fucosidase	-	3.2.1.51
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
23121	alpha-galactosidase	+	3.2.1.22
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68381	alpha-galactosidase	+	3.2.1.22	from API rID32STR
68380	alpha-galactosidase	+	3.2.1.22	from API rID32A
23121	alpha-glucosidase	+	3.2.1.20
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68380	alpha-glucosidase	+	3.2.1.20	from API rID32A
68382	alpha-mannosidase	-	3.2.1.24	from API zym
121434	amylase	-
23121	arginine dihydrolase	-	3.5.3.6
68381	arginine dihydrolase	-	3.5.3.6	from API rID32STR
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
23121	beta-galactosidase	+/-	3.2.1.23
68382	beta-galactosidase	-	3.2.1.23	from API zym
121434	beta-galactosidase	+	3.2.1.23
68381	beta-galactosidase	-	3.2.1.23	from API rID32STR
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
23121	beta-glucosidase	+	3.2.1.21
68382	beta-glucosidase	-	3.2.1.21	from API zym
68381	beta-glucosidase	+	3.2.1.21	from API rID32STR
68380	beta-glucosidase	+	3.2.1.21	from API rID32A
23121	beta-glucuronidase	-	3.2.1.31
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68381	beta-glucuronidase	-	3.2.1.31	from API rID32STR
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
23121	beta-mannosidase	-	3.2.1.25
68381	beta-mannosidase	-	3.2.1.25	from API rID32STR
121434	caseinase	-	3.4.21.50
23121	catalase	-	1.11.1.6
121434	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
121434	DNase	-
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
121434	gamma-glutamyltransferase	-	2.3.2.2
121434	gelatinase	-
23121	glutamate decarboxylase	-	4.1.1.15
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
23121	glutamyl-glutamate arylamidase	-
68380	glutamyl-glutamate arylamidase	-		from API rID32A
23121	glycin arylamidase	+
23121	glycyl tryptophan arylamidase	-
68381	glycyl tryptophan arylamidase	-		from API rID32STR
23121	histidine arylamidase	-
68380	histidine arylamidase	-		from API rID32A
23121	L-arginine arylamidase	+
68380	L-arginine arylamidase	-		from API rID32A
23121	lecithinase	-
121434	lecithinase	-
23121	leucine arylamidase	+	3.4.11.1
68382	leucine arylamidase	-	3.4.11.1	from API zym
68380	leucine arylamidase	+	3.4.11.1	from API rID32A
23121	leucyl glycin arylamidase	+	3.4.11.1
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
23121	lipase	-
121434	lipase	-
68382	lipase (C 14)	-		from API zym
121434	lysine decarboxylase	-	4.1.1.18
23121	N-acetyl-beta-glucosaminidase	-	3.2.1.52
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68381	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32STR
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
121434	ornithine decarboxylase	-	4.1.1.17
121434	oxidase	-
68380	phenylalanine arylamidase	+		from API rID32A
23121	phenylalanine deaminase	+	4.3.1.5
23121	proline-arylamidase	+	3.4.11.5
121434	protease	-
23121	pyrazinamidase	+	3.5.1.B15
23121	pyroglutamic acid arylamidase	-
68381	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32STR
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
23121	serine arylamidase	-
68380	serine arylamidase	-		from API rID32A
23121	tripeptide aminopeptidase	+	3.4.11.4
68382	trypsin	-	3.4.21.4	from API zym
23121	tryptophan deaminase	-	4.1.99.1
121434	tryptophan deaminase	-
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
121434	tween esterase	-
23121	tyrosine arylamidase	+
68380	tyrosine arylamidase	+		from API rID32A
23121	urease	-	3.5.1.5
121434	urease	-	3.5.1.5
68381	urease	-	3.5.1.5	from API rID32STR
68380	urease	-	3.5.1.5	from API rID32A
68382	valine arylamidase	-		from API zym

Fatty acid profile

Metadata FA analysis

@ref

57053

Fatty acid	Percentage	ECL
C16:0	38.9	16
C18:1 ω9c	32.2	17.769
C18:0	11.7	18
C18:2 ω6,9c/C18:0 ANTE	7.2	17.724
Unidentified	3	18.221
C17:1 ω5c ISO	1.1	16.461
C19:1 ISO I	1.1	18.473
C14:0	0.9	14
Unidentified	0.9	18.175
C16:1 ω9c	0.7	15.774
C20:1 ω9c	0.7	19.77
C16:1 ω7c	0.6	15.819
Unidentified	0.6	16.758
C12:0	0.5	12

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121434	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
121434	not determinedn.d.	-	-	-	-	+/-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	+	-	+	-	+	+	+/-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
6830	-	-	+	+	-	+	+	-	-	-	-	-	-	-	-	-	-	-	+/-	-	+	+	-	+	-	+/-	-	-	-

API rID32STR

@ref	ADH (Arg)	beta GLU	beta GAR	beta GUR	alpha GAL	PAL	RIB	MAN	SOR	LAC	TRE	RAF	SAC	LARA	DARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	HIP	GLYG	PUL	MAL	MEL	MLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	TAG	beta MAN	URE
6830	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	-
#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Tooth
#Host Body-Site	#Other	#Abscess
#Host	#Human	#Male

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
6830	human, dental abscess		Cardiff	United Kingdom	GBR	Europe
23121	dental abscess of a male patient
57053	Human dental abscess,male	1993	Bury	United Kingdom	GBR	Europe
67770	Human dental abscess
67771	From human dental abscess		male, Cardiff	United Kingdom	GBR	Europe
121434	Human, Dental abscess			United Kingdom	GBR	Europe

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
6830	yes, in single cases	1	Risk group (German classification) According to TRBA 466
121434		2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM410401v1 assembly for Actinomyces oricola R5292	contig	GCA_004104015	206043.3	2867461147	206043	63.34

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6830	Actinomyces oricola 16S rRNA gene, type strain CCUG 46090T	AJ507295	1508		206043
67770	Actinomyces oricola gene for 16S ribosomal RNA, partial sequence	AB626631	1497		206043

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Actinomyces oricola R5292
NCBI: GCA_004104015

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	69.30	no
125439	motility	BacteriaNetⓘ	no	89.40	no
125439	gram_stain	BacteriaNetⓘ	positive	96.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	82.80	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Noncontiguous finished genome sequences and descriptions of Actinomyces ihuae, Actinomyces bouchesdurhonensis, Actinomyces urinae, Actinomyces marseillensis, Actinomyces mediterranea and Actinomyces oralis sp. nov. identified by culturomics.	Mbogning Fonkou MD, Mailhe M, Ndongo S, Ricaboni D, Morand A, Cornu F, Tidjani Alou M, Bilen M, Andrieu C, Levasseur A, Cadoret F, Raoult D.	New Microbes New Infect	10.1016/j.nmni.2018.06.004	2018
Phylogeny	Actinomyces oricola sp. nov., from a human dental abscess.	Hall V, Collins MD, Hutson RA, Inganas E, Falsen E, Duerden BI	Int J Syst Evol Microbiol	10.1099/ijs.0.02576-0	2003

References

#6830	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17234
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23121	Val Hall, Matthew D. Collins, Roger A. Hutson, Elisabeth Inganäs, Enevold Falsen, Brian I. Duerden: Actinomyces oricola sp. nov., from a human dental abscess. IJSEM 53: 1515 - 1518 2003 ( DOI 10.1099/ijs.0.02576-0 , PubMed 13130041 )
#38219	; Curators of the CIP;
#57053	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 46090
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68371	Automatically annotated from API 50CH acid .
#68380	Automatically annotated from API rID32A .
#68381	Automatically annotated from API rID32STR .
#68382	Automatically annotated from API zym .
#121434	Collection of Institut Pasteur ; Curators of the CIP; CIP 107639
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinomyces oricola (KCTC 15234, DSM 17234, CCUG 46090)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Fatty acid profile

API zym

API 50CHac

API rID32A

API rID32STR

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_004104015

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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