Name: Brevibacterium permense DSM 21546
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1864

Type strain:

Species: Brevibacterium permense

Culture col. no.: DSM 21546, JCM 13318, LMG 22207, UCM Ac-413, VKM Ac-2280, BCRC 16990, CIP 109095

Strain history: CIP <- 2006, VKM <- 2005, LMG <- E. G. Plotnikova and O. V. Altyntseva

NCBI tax ID(s): 234834 (species)

SI-ID 127962

VKM Ac-2280, LMG 22207, JCM 13318, CIP 109095, DSM 21546

Special Collections

Section

Brevibacterium permense DSM 21546 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from salt-contaminated soil, Russia.

Gram-positive
rod-shaped
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Brevibacteriaceae*
	Genus	*Brevibacterium*
	Species	**Brevibacterium permense**
	Full Scientific Name (LPSN)	Brevibacterium permense Gavrish et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #121683]	Gram stain	positive

[Ref.: #121683]	Cell shape	rod-shaped

[Ref.: #121683]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15785]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #15785]

Culture medium growth

[Ref.: #15785]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15785]

Culture medium composition

expand / minimize

[Ref.: #40119]

Culture medium

MEDIUM 112 - for Janibacter

[Ref.: #40119]

Culture medium growth

[Ref.: #40119]

Culture medium composition

expand / minimize

[Ref.: #121683]

Culture medium

CIP Medium 112

[Ref.: #121683]

Culture medium growth

[Ref.: #121683]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #15785]	growth	28 °C
[Ref.: #40119]	growth	30 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #121683]	Oxygen tolerance	obligate aerobe
[Ref.: #69480]	Oxygen tolerance	aerobe Confidence in %92.503

[Ref.: #67770]

Observation

quinones: MK-8(H₂)

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #121683]		nitrate ChEBI	-	reduction
[Ref.: #121683]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #121683]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #121683]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121683]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #121683]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121683]	11666	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15785]	Sample type/isolated from	salt-contaminated soil, Russia
[Ref.: #15785]	Geographic location (country and/or sea, region)	Berezniki, Perm region
[Ref.: #15785]	Country	Russia
[Ref.: #15785]	Country ISO 3 Code	RUS
[Ref.: #15785]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Salt-contaminated soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Berezniki, the Perm region
[Ref.: #67770]	Country	Russia
[Ref.: #67770]	Country ISO 3 Code	RUS

[Ref.: #121683]	Sample type/isolated from	Environment, Salt-contaminated soil samples
[Ref.: #121683]	Country	Russian Federation
[Ref.: #121683]	Country ISO 3 Code	RUS
[Ref.: #121683]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Environmental	#Terrestrial	#Soil
#Condition	#Saline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15785]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121683]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15785]	Brevibacterium permense strain VKM Ac-2280 16S ribosomal RNA gene, partial sequence	AY243343	1459	GenBank ENA	234834 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Brevibacterium permense VKM Ac-2280	GCA_013280495	contig	GenBank ENA	234834 tax ID

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Brevibacterium permense VKM Ac-2280 NCBI: GCA_013280495.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.024	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.192	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	92.503	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	75.807	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90.5	no

Availability in culture collections External links

[Ref.: #15785]

Culture collection no.

DSM 21546, JCM 13318, LMG 22207, UCM Ac-413, VKM Ac-2280, BCRC 16990, CIP 109095

[Ref.: #71509]

SI-ID 127962

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Brevibacterium renqingii sp. nov., isolated from the Daqu of Baijiu.	Yan Y, Xing X, Sun Z, Li J, Hao S, Xu J	Arch Microbiol	10.1007/s00203-021-02212-x	2021	*
Phylogeny	Brevibacterium sediminis sp. nov., isolated from deep-sea sediments from the Carlsberg and Southwest Indian Ridges.	Chen P, Zhang L, Wang J, Ruan J, Han X, Huang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.001506	2016	*
Phylogeny	[Three new species of brevibacteria--Brevibacterium antiquum sp. nov., Brevibacterium aurantiacum sp. nov. and Brevibacterium permense sp. nov].	Gavrish EIu, Krauzova VI, Potekhina NV, Karasev SG, Plotnikova EG, Altyntseva OV, Korosteleva LA, Evtushenko LI	Mikrobiologiia		2004	*
Metabolism	A mannitol teichoic acid containing rhamnose and pyruvic acid acetal from the cell wall of Brevibacterium permense VKM Ac-2280.	Potekhina NV, Shashkov AS, Evtushenko LI, Senchenkova SN, Naumova IB	Carbohydr Res	10.1016/j.carres.2003.05.002	2003	*

References

#15785

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21546

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#40119 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#71509

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID127962.1 )

#121683 Collection of Institut Pasteur ; Curators of the CIP; CIP 109095
* These data were automatically processed and therefore are not curated

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Brevibacterium permense VKM Ac-2280

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