Brevibacterium permense (DSM 21546, JCM 13318, LMG 22207)

Name: Brevibacterium permense (DSM 21546, JCM 13318, LMG 22207)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1864

Type strain

Culture col. no. DSM 21546 JCM 13318 LMG 22207 UCM Ac-413 VKM Ac-2280 2 more

NCBI tax ID(s) 234834

Special Collections DSMZ JCM CIP

History DSMZ <- JCM <- LMG <- VKM <- E. G. Plotnikova and O. V. Altyntseva JCM <-- LMG 22207 <-- VKM Ac-2280 <-- E. G. Plotnikova and O. V. Altyntseva. CIP <- 2006, VKM <- 2005, LMG <- E. G. Plotnikova and O. V. Altyntseva

Links

Brevibacterium permense DSM 21546 is an obligate aerobe, Gram-positive, rod-shaped bacterium that was isolated from salt-contaminated soil, Russia.

Gram-positive rod-shaped obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 127962

VKM Ac-2280,LMG 22207,JCM 13318,CIP 109095,DSM 21546

@ref 20215

Last LPSN update 2026-05-29 08:25:21

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Brevibacteriaceae

Genus Brevibacterium

Species Brevibacterium permense

Full scientific name Brevibacterium permense Gavrish et al. 2005

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
121683	positive	rod-shaped
125438				90.5

Colony morphology

121683

Hemolysis ability0

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
15785	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
40119	MEDIUM 112 - for Janibacter		Distilled water make up to (1000.000 ml);Magnesium sulphate heptahydrate (1.000 g);Agar (20.000 g);Yeast extract (5.000 g);Peptone (10.000 g);Tween 80 (50.000 mg);Glycerol (2.000 g);Malt extract (5.000 g);Beef extract (2.000 g);Casamino acids (5.000 g);Ca
121683	CIP Medium 112	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
15785	positive	growth	28
40119	positive	growth	30
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
121683	obligate aerobe
125438	aerobe	92.503

Observation

67770

Observationquinones: MK-8(H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
121683	17632 ChEBI	nitrate	-	reduction
121683	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
121683	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
121683	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121683	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
121683	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121683	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Contamination	-
#Environmental	#Terrestrial	#Soil
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
15785	salt-contaminated soil, Russia	Berezniki, Perm region	Russia	RUS	Europe
67770	Salt-contaminated soil	Berezniki, the Perm region	Russia	RUS
121683	Environment, Salt-contaminated soil samples		Russian Federation	RUS	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15785	1	Risk group (German classification) According to TRBA 466
121683	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM1328049v1 assembly for Brevibacterium permense VKM Ac-2280	contig	GCA_013280495	234834.3	8068724562	234834	68.56
124043	ASM3952863v1 assembly for Brevibacterium permense JCM 13318	scaffold	GCA_039528635			234834	63.89

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15785	Brevibacterium permense strain VKM Ac-2280 16S ribosomal RNA gene, partial sequence	AY243343	1459		234834

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Brevibacterium permense VKM Ac-2280
NCBI: GCA_013280495.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.02	no
125438	anaerobic	anaerobicⓘ	no	97.19	yes
125438	aerobic	aerobicⓘ	yes	92.50	yes
125438	spore-forming	spore-formingⓘ	no	75.81	no
125438	thermophilic	thermophileⓘ	no	96.00	no
125438	flagellated	motile2+ⓘ	no	90.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	The ant Lasius niger is a new source of bacterial enzymes with biotechnological potential for bleaching dye.	Diez-Mendez A, Garcia-Fraile P, Solano F, Rivas R.	Sci Rep	10.1038/s41598-019-51669-w	2019
Genetics	Draft genome sequence of a new carotenoid-producing strain Brevibacterium sp. XU54, isolated from radioactive soil in Xinjiang, China.	Zhang Z, Huang C, Du B, Xie C, Jiang L, Tang S, Xu X.	3 Biotech	10.1007/s13205-022-03366-1	2022
Genetics	Identification, characterization, and genome sequencing of Brevibacterium sediminis MG-1 isolate with growth-promoting properties.	Lutfullin MT, Lutfullina GF, Pudova DS, Akosah YA, Shagimardanova EI, Vologin SG, Sharipova MR, Mardanova AM.	3 Biotech	10.1007/s13205-022-03392-z	2022
Metabolism	A mannitol teichoic acid containing rhamnose and pyruvic acid acetal from the cell wall of Brevibacterium permense VKM Ac-2280.	Potekhina NV, Shashkov AS, Evtushenko LI, Senchenkova SN, Naumova IB	Carbohydr Res	10.1016/j.carres.2003.05.002	2003
Phylogeny	Brevibacterium oceani sp. nov., isolated from deep-sea sediment of the Chagos Trench, Indian Ocean.	Bhadra B, Raghukumar C, Pindi PK, Shivaji S.	Int J Syst Evol Microbiol	10.1099/ijs.0.64869-0	2008
Phylogeny	Brevibacterium renqingii sp. nov., isolated from the Daqu of Baijiu.	Yan Y, Xing X, Sun Z, Li J, Hao S, Xu J	Arch Microbiol	10.1007/s00203-021-02212-x	2021
Phylogeny	Brevibacterium sediminis sp. nov., isolated from deep-sea sediments from the Carlsberg and Southwest Indian Ridges.	Chen P, Zhang L, Wang J, Ruan J, Han X, Huang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.001506	2016
Phylogeny	[Three new species of brevibacteria--Brevibacterium antiquum sp. nov., Brevibacterium aurantiacum sp. nov. and Brevibacterium permense sp. nov].	Gavrish EIu, Krauzova VI, Potekhina NV, Karasev SG, Plotnikova EG, Altyntseva OV, Korosteleva LA, Evtushenko LI	Mikrobiologiia		2004

References

#15785	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21546
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#40119	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#121683	Collection of Institut Pasteur ; Curators of the CIP; CIP 109095
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Brevibacterium permense (DSM 21546, JCM 13318, LMG 22207)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_013280495

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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