Name: Brevibacterium antiquum DSM 21545
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1862

Type strain:

Species: Brevibacterium antiquum

Culture col. no.: DSM 21545, JCM 13317, LMG 22206, UCM Ac-411, VKM Ac-2118

Strain history: LMG 22206 <-- VKM Ac-2118 <-- S. G. Karasev.

NCBI tax ID(s): 234835 (species)

SI-ID 127961

VKM Ac-2118, LMG 22206, JCM 13317, DSM 21545

Special Collections

DSMZ
JCM

Section

Brevibacterium antiquum DSM 21545 is an aerobe, mesophilic bacterium that was isolated from 1.8- to 3-Million-year-old ancient permafrost sediments.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Brevibacteriaceae*
	Genus	*Brevibacterium*
	Species	**Brevibacterium antiquum**
	Full Scientific Name (LPSN)	Brevibacterium antiquum Gavrish et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %92.642

[Ref.: #69480]	Motility	no Confidence in %90.267

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15784]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #15784]

Culture medium growth

[Ref.: #15784]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15784]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #15784]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %92.077

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-8(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15784]	Sample type/isolated from	1.8- to 3-Million-year-old ancient permafrost sediments
[Ref.: #15784]	Geographic location (country and/or sea, region)	Kolyma Lowland, East Siberia
[Ref.: #15784]	Country	Russia
[Ref.: #15784]	Country ISO 3 Code	RUS
[Ref.: #15784]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	1.8- to 3-Million-year-old ancient permafrost sediments
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kolyma Lowland, East Siberia
[Ref.: #67770]	Country	Russia
[Ref.: #67770]	Country ISO 3 Code	RUS
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Permafrost
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15784]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15784]	Brevibacterium antiquum strain VKM Ac-2118 16S ribosomal RNA gene, partial sequence	AY243344	1501	GenBank ENA	234835 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Brevibacterium antiquum DSM 21545	GCA_016107655	contig	GenBank ENA	234835 tax ID	*
[Ref.: #66792]	Brevibacterium antiquum strain DSM 21545	234835.13	wgs	PATRIC	234835 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Brevibacterium antiquum strain DSM 21545 PATRIC: 234835.8
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Brevibacterium antiquum strain DSM 21545 PATRIC: 234835.13
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	92.642	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.233	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	68.651	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	92.077	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.471	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90.267	no

Availability in culture collections External links

[Ref.: #15784]

Culture collection no.

DSM 21545, JCM 13317, LMG 22206, UCM Ac-411, VKM Ac-2118

[Ref.: #71507]

SI-ID 127961

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Increase in Bacterial Colony Formation from a Permafrost Ice Wedge Dosed with a Tomitella biformata Recombinant Resuscitation-Promoting Factor Protein.	Puspita ID, Kitagawa W, Kamagata Y, Tanaka M, Nakatsu CH	Microbes Environ	10.1264/jsme2.ME14119	2015	*
Phylogeny	[Three new species of brevibacteria--Brevibacterium antiquum sp. nov., Brevibacterium aurantiacum sp. nov. and Brevibacterium permense sp. nov].	Gavrish EIu, Krauzova VI, Potekhina NV, Karasev SG, Plotnikova EG, Altyntseva OV, Korosteleva LA, Evtushenko LI	Mikrobiologiia		2004	*

References

#15784

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21545

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71507

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID127961.1 )

* These data were automatically processed and therefore are not curated

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Brevibacterium antiquum strain DSM 21545

Brevibacterium antiquum strain DSM 21545

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