Brevibacterium antiquum (DSM 21545, JCM 13317, LMG 22206)

Name: Brevibacterium antiquum (DSM 21545, JCM 13317, LMG 22206)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1862

Type strain

Culture col. no. DSM 21545 JCM 13317 LMG 22206 UCM Ac-411 VKM Ac-2118

NCBI tax ID(s) 234835

Special Collections DSMZ JCM

History <- JCM <- LMG <- VKM <- S. G. Karasev LMG 22206 <-- VKM Ac-2118 <-- S. G. Karasev.

Links

Brevibacterium antiquum DSM 21545 is a bacterium that was isolated from 1.8- to 3-Million-year-old ancient permafrost sediments.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 127961

VKM Ac-2118,LMG 22206,JCM 13317,DSM 21545

@ref 20215

Last LPSN update 2026-02-09 11:18:12

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Brevibacteriaceae

Genus Brevibacterium

Species Brevibacterium antiquum

Full scientific name Brevibacterium antiquum Gavrish et al. 2005

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125438		90.267
125438		92.642	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
15784	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
15784	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	92.077
125439	obligate aerobe	90.3

Spore formation

@ref	Spore formation	Confidence
125439		94.6

Observation

67770

Observationquinones: MK-8(H₂)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Permafrost
#Environmental	#Terrestrial	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
15784	1.8- to 3-Million-year-old ancient permafrost sediments	Kolyma Lowland, East Siberia	Russia	RUS	Asia
67770	1.8- to 3-Million-year-old ancient permafrost sediments	Kolyma Lowland, East Siberia	Russia	RUS

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15784	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1610765v1 assembly for Brevibacterium antiquum DSM 21545	contig	GCA_016107655	234835.13	3003270302	234835	72
124043	ASM3952859v1 assembly for Brevibacterium antiquum JCM 13317	scaffold	GCA_039528595			234835	64.93

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
15784	Brevibacterium antiquum strain VKM Ac-2118 16S ribosomal RNA gene, partial sequence	AY243344	1501	234835
124043	Brevibacterium antiquum strain VKM Ac-2118 (T) 16S ribosomal RNA gene, partial sequence.	MK424280	1458	234835
124043	Brevibacterium antiquum strain VKM Ac-2118 16S ribosomal RNA gene, partial sequence.	MN526986	475	234835

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Brevibacterium antiquum DSM 21545
NCBI: GCA_016107655

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.60	no
125439	motility	BacteriaNetⓘ	yes	54.80	no
125439	gram_stain	BacteriaNetⓘ	positive	80.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	90.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Brevibacterium antiquum strain DSM 21545
PATRIC: 234835.13

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.64	no
125438	anaerobic	anaerobicⓘ	no	97.23	no
125438	spore-forming	spore-formingⓘ	no	68.65	no
125438	aerobic	aerobicⓘ	yes	92.08	no
125438	thermophilic	thermophileⓘ	no	96.47	yes
125438	flagellated	motile2+ⓘ	no	90.27	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Nutrient Removal and Recovery from Urine Using Bio-Mineral Formation Processes.	Colston RE, Nair A, Vale P, Hassard F, Stephenson T, Soares A.	ACS Sustain Resour Manag	10.1021/acssusresmgt.4c00025	2024
Genetics	Draft genome sequence of a new carotenoid-producing strain Brevibacterium sp. XU54, isolated from radioactive soil in Xinjiang, China.	Zhang Z, Huang C, Du B, Xie C, Jiang L, Tang S, Xu X.	3 Biotech	10.1007/s13205-022-03366-1	2022
	Predicting the potential of sludge dewatering liquors to recover nutrients as struvite biominerals.	Simoes F, Colston R, Rosa-Fernandes C, Vale P, Stephenson T, Soares A.	Environ Sci Ecotechnol	10.1016/j.ese.2020.100052	2020
Metabolism	The role of pH on the biological struvite production in digested sludge dewatering liquors.	Simoes F, Vale P, Stephenson T, Soares A.	Sci Rep	10.1038/s41598-018-25431-7	2018
	Biological recovery of phosphorus from waste activated sludge via alkaline fermentation and struvite biomineralization by Brevibacterium antiquum.	Cosgun S, Kara B, Kunt B, Hur C, Semerci N.	Biodegradation	10.1007/s10532-022-09975-0	2022
	The mechanisms of struvite biomineralization in municipal wastewater.	Leng Y, Soares A.	Sci Total Environ	10.1016/j.scitotenv.2021.149261	2021
	Understanding the mechanisms of biological struvite biomineralisation.	Leng Y, Soares A.	Chemosphere	10.1016/j.chemosphere.2021.130986	2021
Metabolism	Understanding the biochemical characteristics of struvite bio-mineralising microorganisms and their future in nutrient recovery.	Leng Y, Colston R, Soares A.	Chemosphere	10.1016/j.chemosphere.2019.125799	2020
Metabolism	Understanding the growth of the bio-struvite production Brevibacterium antiquum in sludge liquors.	Simoes F, Vale P, Stephenson T, Soares A.	Environ Technol	10.1080/09593330.2017.1411399	2018
Enzymology	Protease and lipase activities of fungal and bacterial strains derived from an artisanal raw ewe's milk cheese.	Ozturkoglu-Budak S, Wiebenga A, Bron PA, de Vries RP.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2016.08.007	2016
Biotechnology	In-depth characterization of food and environmental microbiomes across different meat processing plants.	Barcenilla C, Cobo-Diaz JF, Puente A, Valentino V, De Filippis F, Ercolini D, Carlino N, Pinto F, Segata N, Prieto M, Lopez M, Alvarez-Ordonez A.	Microbiome	10.1186/s40168-024-01856-3	2024
Genetics	Identification, characterization, and genome sequencing of Brevibacterium sediminis MG-1 isolate with growth-promoting properties.	Lutfullin MT, Lutfullina GF, Pudova DS, Akosah YA, Shagimardanova EI, Vologin SG, Sharipova MR, Mardanova AM.	3 Biotech	10.1007/s13205-022-03392-z	2022
Metabolism	S-methyl thioesters are produced from fatty acids and branched-chain amino acids by brevibacteria: focus on L-leucine catabolic pathway and identification of acyl-CoA intermediates.	Sourabie AM, Spinnler HE, Bourdat-Deschamps M, Tallon R, Landaud S, Bonnarme P.	Appl Microbiol Biotechnol	10.1007/s00253-011-3500-3	2012
	Evaluation of bacteria isolated from rice rhizosphere for biological control of charcoal rot of sorghum caused by Macrophomina phaseolina (Tassi) Goid.	Gopalakrishnan S, Humayun P, Kiran BK, Kannan IG, Vidya MS, Deepthi K, Rupela O.	World J Microbiol Biotechnol	10.1007/s11274-010-0579-0	2011
	Modulation of Metabolome and Overall Perception of Pea Protein-Based Gels Fermented with Various Synthetic Microbial Consortia.	Ben-Harb S, Saint-Eve A, Irlinger F, Souchon I, Bonnarme P.	Foods	10.3390/foods11081146	2022
Metabolism	Formation of insoluble magnesium phosphates during growth of the archaea Halorubrum distributum and Halobacterium salinarium and the bacterium Brevibacterium antiquum.	Smirnov A, Suzina N, Chudinova N, Kulakovskaya T, Kulaev I.	FEMS Microbiol Ecol	10.1016/j.femsec.2004.10.012	2005
	Plant growth-promotion and biofortification of chickpea and pigeonpea through inoculation of biocontrol potential bacteria, isolated from organic soils.	Gopalakrishnan S, Vadlamudi S, Samineni S, Sameer Kumar CV.	Springerplus	10.1186/s40064-016-3590-6	2016
Metabolism	A High Throughput Isolation Method for Phosphate-Accumulating Organisms.	Anand A, Aoyagi H.	Sci Rep	10.1038/s41598-019-53429-2	2019
	Recovery of phosphorus as soluble phosphates from aqueous solutions using chitosan hydrogel sorbents.	Jozwiak T, Kowalkowska A, Filipkowska U, Struk-Sokolowska J, Bolozan L, Gache L, Ilie M.	Sci Rep	10.1038/s41598-021-96416-2	2021
Phylogeny	Identification of brevibacteriaceae by multilocus sequence typing and comparative genomic hybridization analyses.	Forquin MP, Duvergey H, Proux C, Loux V, Mounier J, Landaud S, Coppee JY, Gibrat JF, Bonnarme P, Martin-Verstraete I, Vallaeys T.	Appl Environ Microbiol	10.1128/aem.00224-09	2009
	Plant growth-promoting traits of biocontrol potential bacteria isolated from rice rhizosphere.	Gopalakrishnan S, Upadhyaya H, Vadlamudi S, Humayun P, Vidya MS, Alekhya G, Singh A, Vijayabharathi R, Bhimineni RK, Seema M, Rathore A, Rupela O.	Springerplus	10.1186/2193-1801-1-71	2012
Metabolism	Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products.	Almeida M, Hebert A, Abraham AL, Rasmussen S, Monnet C, Pons N, Delbes C, Loux V, Batto JM, Leonard P, Kennedy S, Ehrlich SD, Pop M, Montel MC, Irlinger F, Renault P.	BMC Genomics	10.1186/1471-2164-15-1101	2014
Phylogeny	Increase in Bacterial Colony Formation from a Permafrost Ice Wedge Dosed with a Tomitella biformata Recombinant Resuscitation-Promoting Factor Protein.	Puspita ID, Kitagawa W, Kamagata Y, Tanaka M, Nakatsu CH	Microbes Environ	10.1264/jsme2.ME14119	2015
Phylogeny	[Three new species of brevibacteria--Brevibacterium antiquum sp. nov., Brevibacterium aurantiacum sp. nov. and Brevibacterium permense sp. nov].	Gavrish EIu, Krauzova VI, Potekhina NV, Karasev SG, Plotnikova EG, Altyntseva OV, Korosteleva LA, Evtushenko LI	Mikrobiologiia		2004

References

#15784	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21545
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Brevibacterium antiquum (DSM 21545, JCM 13317, LMG 22206)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016107655

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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