Brevibacterium iodinum (DSM 20626, ATCC 49514, NCDO 613)

Name: Brevibacterium iodinum (DSM 20626, ATCC 49514, NCDO 613)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1840

Type strain

Culture col. no. DSM 20626 ATCC 49514 NCDO 613 VKM Ac-2106 NRRL B-1717 13 more

NCBI tax ID(s) 1255616 31943

Special Collections DSMZ CCUG JCM KCTC Wink compendium JMRC

History DSMZ <- NCDO <- J.G. Davis (Chromobacterium iodinum) JCM <-- NCDO 613 <-- J. G. Davis.

Links

Brevibacterium iodinum DSM 20626 is a bacterium that was isolated from milk.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 7658

ATCC 49514,NCDO 613,DSM 20626,CCUG 23893,JCM 2591,CCRC 12216,IFO 15230,IMET 10995,KCTC 3083,NCIMB 700613,CCM 4116,VKM Ac-2106,LMG 21453,NBRC 15230,NRRL B-1717,BCRC 12216,NCTC 12955,NRRL B-1712,CGMCC 1.1928

@ref 20215

Last LPSN update 2026-05-29 08:25:21

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Brevibacteriaceae

Genus Brevibacterium

Species Brevibacterium iodinum

Full scientific name Brevibacterium iodinum (ex Davis 1939) Collins et al. 1981

Synonyms (1)

"Arthrobacter iodinum"

BacDive ID	Other strains from **Brevibacterium iodinum** (4)	Type strain
1839	B. iodinum Delft, DSM 433, DSM 50269, IMG 1583
134750	B. iodinum CIP 59.15, ATCC 9897, CCTM La 2749, NCIMB ...
144238	B. iodinum CCUG 23894, IMRU 26, ATCC 15728, LMG 2202
144239	B. iodinum CCUG 23895, ATCC 15729, LMG 2203

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125438		90.5
125438		90.633	positive

Colony morphology

@ref	Colony color	Incubation period	Medium used
18764	Chocolate brown	10-14 days	ISP 2
18764	Mahagony brown	10-14 days	ISP 3
18764	Olive grey	10-14 days	ISP 4
18764	Reed green	10-14 days	ISP 5
18764	Reed green	10-14 days	ISP 6
18764	Black olive	10-14 days	ISP 7

Multicellular morphology

@ref	Forms multicellular complex	Medium name
18764		ISP 2
18764		ISP 3
18764		ISP 4
18764		ISP 5
18764		ISP 6
18764		ISP 7

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
18764	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
18764	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
18764	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
18764	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
18764	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
18764	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
8974	CORYNEBACTERIUM AGAR (DSMZ Medium 53)	Medium recipe at MediaDive	Name: CORYNEBACTERIUM AGAR (DSMZ Medium 53) Composition: Agar 15.0 g/l Casein peptone 10.0 g/l NaCl 5.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
8974	positive	growth	30
18764	positive	optimum	28
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	90.972

Spore formation

@ref	Spore formation	Confidence
125439		95.164

Halophily

@ref	Salt	Growth	Tested relation	Concentration
18764	NaCl	positive	maximum	10 %

Murein

@ref	Murein short key	Type
8974	A31	A1gamma m-Dpm-direct

Observation

67770

Observationquinones: MK-8(H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
18764	22599 ChEBI	arabinose	-
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
18764	62968 ChEBI	cellulose	+
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
18764	28757 ChEBI	fructose	-
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
18764	17234 ChEBI	glucose	+
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
18764	29864 ChEBI	mannitol	-
18764	17268 ChEBI	myo-inositol	-
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
18764	16634 ChEBI	raffinose	+
18764	26546 ChEBI	rhamnose	+
18764	17992 ChEBI	sucrose	-
68379	17992 ChEBI	sucrose	+	fermentation	from API Coryne
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
18764	18222 ChEBI	xylose	+

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	+	3.2.1.31	from API Coryne
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68368	gelatinase	-		from API 20E
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68379	pyrazinamidase	+	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	+	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68379	urease	-	3.5.1.5	from API Coryne
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	-		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
18764	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
18764	-	+	+	-	+	-	-	-	-	-	+/-	not determinedn.d.	-	-	-	-	-	-	+	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
18764	not determinedn.d.	+	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Fluids	#Milk
#Engineered	#Food production	#Dairy product

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
8974	milk
67770	Milk	United Kingdom	GBR	Europe

Taxonmaps

69479

Global distribution of 16S sequence X83813 (>99% sequence identity) for Brevibacterium from Microbeatlas

Aquatic Samples	309
Soil Samples	309
Animal Samples	2183
Plant Samples	69
Total Samples	2870

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18764	1	Hazard group According to TRBA 466
8974	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score	IMG accession
67770	Assembly_BI49514 assembly for Brevibacterium iodinum ATCC 49514	contig	GCA_900169265	1255616.4	1255616	63.74
66792	Brevibacterium iodinum ATCC 49514	complete			1255616	43.94	2600255375

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	B.iodinum 16S rRNA gene	X83813	1485	31943
20218	B.iodinum (NCDO 613) gene for 16S ribosomal RNA	X76567	1438	31943
124043	Brevibacterium iodinum strain TDSCO 01 16S ribosomal RNA gene, partial sequence.	KX184215	899	31943
124043	Brevibacterium iodinum strain NCDO 613 16S ribosomal RNA gene, partial sequence.	MW198132	601	31943

GC content

@ref	GC-content (mol%)
8974	63.0
67770	63.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Assembly_BI49514 assembly for Brevibacterium iodinum ATCC 49514
NCBI: GCA_900169265

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	72.22	no
125439	gram_stain	BacteriaNetⓘ	positive	70.50	no
125439	motility	BacteriaNetⓘ	yes	44.21	no
125439	spore_formation	BacteriaNetⓘ	no	95.16	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Brevibacterium iodinum ATCC 49514
PATRIC: 1255616.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.63	no
125438	anaerobic	anaerobicⓘ	no	98.44	no
125438	spore-forming	spore-formingⓘ	no	74.72	no
125438	aerobic	aerobicⓘ	yes	90.97	no
125438	thermophilic	thermophileⓘ	no	97.00	no
125438	flagellated	motile2+ⓘ	no	90.50	no

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Metabolism	Genome-based discovery of a novel membrane-bound 1,6-dihydroxyphenazine prenyltransferase from a marine actinomycete.	Zeyhle P, Bauer JS, Kalinowski J, Shin-ya K, Gross H, Heide L.	PLoS One	10.1371/journal.pone.0099122	2014
	Roles of Plant Growth-Promoting Rhizobacteria (PGPR) in Stimulating Salinity Stress Defense in Plants: A Review.	Ha-Tran DM, Nguyen TTM, Hung SH, Huang E, Huang CC.	Int J Mol Sci	10.3390/ijms22063154	2021
	Secondary Metabolites From Halotolerant Plant Growth Promoting Rhizobacteria for Ameliorating Salinity Stress in Plants.	Sunita K, Mishra I, Mishra J, Prakash J, Arora NK.	Front Microbiol	10.3389/fmicb.2020.567768	2020
	Development of Multi-Component Transplant Mixes for Suppression of Meloidogyne incognita on Tomato (Lycopersicon esculentum).	Kokalis-Burelle N, Martinez-Ochoa N, Rodriguez-Kabana R, Kloepper JW.	J Nematol		2002
	Impact of Soil Salinity on the Structure of the Bacterial Endophytic Community Identified from the Roots of Caliph Medic (Medicago truncatula).	Yaish MW, Al-Lawati A, Jana GA, Vishwas Patankar H, Glick BR.	PLoS One	10.1371/journal.pone.0159007	2016
Metabolism	Diversity and evolution of the phenazine biosynthesis pathway.	Mavrodi DV, Peever TL, Mavrodi OV, Parejko JA, Raaijmakers JM, Lemanceau P, Mazurier S, Heide L, Blankenfeldt W, Weller DM, Thomashow LS.	Appl Environ Microbiol	10.1128/aem.02009-09	2010
	Structural studies of a mannitol teichoic acid from the cell wall of bacterium N.C.T.C. 9742.	Anderton WJ, Wilkinson SG.	Biochem J	10.1042/bj2260587	1985
Metabolism	The ectD gene, which is involved in the synthesis of the compatible solute hydroxyectoine, is essential for thermoprotection of the halophilic bacterium Chromohalobacter salexigens.	Garcia-Estepa R, Argandona M, Reina-Bueno M, Capote N, Iglesias-Guerra F, Nieto JJ, Vargas C.	J Bacteriol	10.1128/jb.00136-06	2006
	A seven-gene locus for synthesis of phenazine-1-carboxylic acid by Pseudomonas fluorescens 2-79.	Mavrodi DV, Ksenzenko VN, Bonsall RF, Cook RJ, Boronin AM, Thomashow LS.	J Bacteriol	10.1128/jb.180.9.2541-2548.1998	1998
	Structures of cell wall teichoic acids of Brevibacterium iodinum VKM Ac-2106.	Potekhina NV, Evtushenko LI, Senchenkova SN, Shashkov AS, Naumova IB	Biochemistry (Mosc)	10.1007/s10541-005-0080-9	2004
	Microbacterium elymi sp. nov., Isolated from the Rhizospheric Soil of Elymus tsukushiensis, a Plant Native to the Dokdo Islands, Republic of Korea.	Hwang YJ, Lee SY, Son JS, Youn JS, Lee W, Shin JH, Lee MH, Ghim SY.	J Microbiol Biotechnol	10.4014/jmb.2211.11024	2023
Phylogeny	Brevibacterium oceani sp. nov., isolated from deep-sea sediment of the Chagos Trench, Indian Ocean.	Bhadra B, Raghukumar C, Pindi PK, Shivaji S.	Int J Syst Evol Microbiol	10.1099/ijs.0.64869-0	2008
Phylogeny	Brevibacterium picturae sp. nov., isolated from a damaged mural painting at the Saint-Catherine chapel (Castle Herberstein, Austria).	Heyrman J, Verbeeren J, Schumann P, Devos J, Swings J, De Vos P.	Int J Syst Evol Microbiol	10.1099/ijs.0.63144-0	2004
Phylogeny	Brevibacterium sediminis sp. nov., isolated from deep-sea sediments from the Carlsberg and Southwest Indian Ridges.	Chen P, Zhang L, Wang J, Ruan J, Han X, Huang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.001506	2016

References

#8974	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20626
#18764	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the JMRC: Jena Microbial Resource Collection (JMRC):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Brevibacterium iodinum (DSM 20626, ATCC 49514, NCDO 613)

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