Brevibacterium epidermidis C705 is an obligate aerobe, Gram-positive, rod-shaped bacterium that was isolated from human skin.
Gram-positive rod-shaped obligate aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Micrococcales |
| Family Brevibacteriaceae |
| Genus Brevibacterium |
| Species Brevibacterium epidermidis |
| Full scientific name Brevibacterium epidermidis Collins et al. 1983 |
| BacDive ID | Other strains from Brevibacterium epidermidis (3) | Type strain |
|---|---|---|
| 1836 | B. epidermidis 615, DSM 9586 | |
| 1837 | B. epidermidis DSM 20659, NCDO 2285, JCM 2592, ATCC 49089, ... | |
| 146876 | B. epidermidis CCUG 32343 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 18768 | ISP 2 | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |||
| 18768 | ISP 3 | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |||
| 18768 | ISP 4 | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |||
| 18768 | ISP 5 | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |||
| 18768 | ISP 6 | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 8880 | CORYNEBACTERIUM AGAR (DSMZ Medium 53) | Medium recipe at MediaDive | Name: CORYNEBACTERIUM AGAR (DSMZ Medium 53) Composition: Agar 15.0 g/l Casein peptone 10.0 g/l NaCl 5.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Distilled water | ||
| 40309 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 119090 | CIP Medium 3 | Medium recipe at CIP |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 90.6 |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 8880 | A31 | A1gamma m-Dpm-direct |
| 67770 | Observationquinones: MK-8(H2) |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 18768 | 22599 ChEBI | arabinose | + | ||
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 18768 | 62968 ChEBI | cellulose | - | ||
| 119090 | 16947 ChEBI | citrate | + | carbon source | |
| 68368 | 16947 ChEBI | citrate | + | assimilation | from API 20E |
| 68379 | 17634 ChEBI | D-glucose | - | fermentation | from API Coryne |
| 68379 | 16899 ChEBI | D-mannitol | - | fermentation | from API Coryne |
| 68379 | 16988 ChEBI | D-ribose | - | fermentation | from API Coryne |
| 68379 | 65327 ChEBI | D-xylose | - | fermentation | from API Coryne |
| 68379 | 4853 ChEBI | esculin | - | hydrolysis | from API Coryne |
| 119090 | 4853 ChEBI | esculin | - | hydrolysis | |
| 18768 | 28757 ChEBI | fructose | - | ||
| 68379 | 5291 ChEBI | gelatin | + | hydrolysis | from API Coryne |
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 18768 | 17234 ChEBI | glucose | + | ||
| 68379 | 28087 ChEBI | glycogen | - | fermentation | from API Coryne |
| 119090 | 606565 ChEBI | hippurate | + | hydrolysis | |
| 68379 | 17716 ChEBI | lactose | - | fermentation | from API Coryne |
| 68368 | 25094 ChEBI | lysine | - | degradation | from API 20E |
| 68379 | 17306 ChEBI | maltose | - | fermentation | from API Coryne |
| 18768 | 29864 ChEBI | mannitol | - | ||
| 18768 | 17268 ChEBI | myo-inositol | + | ||
| 68379 | 17632 ChEBI | nitrate | - | reduction | from API Coryne |
| 119090 | 17632 ChEBI | nitrate | + | reduction | |
| 119090 | 17632 ChEBI | nitrate | - | respiration | |
| 119090 | 16301 ChEBI | nitrite | - | reduction | |
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 18768 | 16634 ChEBI | raffinose | + | ||
| 18768 | 26546 ChEBI | rhamnose | - | ||
| 18768 | 17992 ChEBI | sucrose | + | ||
| 68379 | 17992 ChEBI | sucrose | + | fermentation | from API Coryne |
| 119090 | 35020 ChEBI | tributyrin | - | hydrolysis | |
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68379 | 16199 ChEBI | urea | + | hydrolysis | from API Coryne |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| 18768 | 18222 ChEBI | xylose | + |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 119090 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 119090 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68379 | alkaline phosphatase | + | 3.1.3.1 | from API Coryne |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68379 | alpha-glucosidase | - | 3.2.1.20 | from API Coryne |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 119090 | amylase | - | ||
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 119090 | beta-galactosidase | - | 3.2.1.23 | |
| 68379 | beta-galactosidase | + | 3.2.1.23 | from API Coryne |
| 68368 | beta-galactosidase | - | 3.2.1.23 | from API 20E |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68379 | beta-glucosidase | - | 3.2.1.21 | from API Coryne |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68379 | beta-glucuronidase | + | 3.2.1.31 | from API Coryne |
| 119090 | caseinase | + | 3.4.21.50 | |
| 119090 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 119090 | DNase | + | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 119090 | gamma-glutamyltransferase | + | 2.3.2.2 | |
| 119090 | gelatinase | +/- | ||
| 68379 | gelatinase | + | from API Coryne | |
| 68368 | gelatinase | - | from API 20E | |
| 119090 | lecithinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 119090 | lipase | - | ||
| 119090 | lysine decarboxylase | - | 4.1.1.18 | |
| 68368 | lysine decarboxylase | - | 4.1.1.18 | from API 20E |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API Coryne |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 119090 | ornithine decarboxylase | - | 4.1.1.17 | |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 119090 | oxidase | - | ||
| 119090 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 119090 | protease | - | ||
| 68379 | pyrazinamidase | + | 3.5.1.B15 | from API Coryne |
| 68379 | pyrrolidonyl arylamidase | + | 3.4.19.3 | from API Coryne |
| 119090 | tryptophan deaminase | - | ||
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 119090 | tween esterase | - | ||
| 119090 | urease | - | 3.5.1.5 | |
| 68379 | urease | + | 3.5.1.5 | from API Coryne |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
| 68382 | valine arylamidase | + | from API zym |
| Metadata FA analysis | |||||||||||||||||||||||||
| type of FA analysis | whole cell analysis | ||||||||||||||||||||||||
| method/protocol | CCUG | ||||||||||||||||||||||||
| @ref | 50138 | ||||||||||||||||||||||||
|
|||||||||||||||||||||||||
Global distribution of 16S sequence X76565 (>99% sequence identity) for Brevibacterium from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | ASM157080v1 assembly for Brevibacterium epidermidis NBRC 14811 | contig | 1349751 | 72.54 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | B.epidermidis (NCDO 2286) gene for 16S ribosomal RNA | X76565 | 1482 | 1698 | ||
| 124043 | Brevibacterium epidermidis strain NBRC 14811 16S ribosomal RNA gene, partial sequence. | MW198125 | 601 | 1698 | ||
| 124043 | Brevibacterium epidermidis strain NBRC 14811 16S ribosomal RNA gene, partial sequence. | PQ248411 | 590 | 1698 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 90.60 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 50.60 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 87.50 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 90.70 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 92.32 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 97.19 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 75.53 | no |
| 125438 | aerobic | aerobicⓘ | yes | 89.10 | no |
| 125438 | thermophilic | thermophileⓘ | no | 95.47 | no |
| 125438 | flagellated | motile2+ⓘ | no | 91.00 | no |
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| #8880 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20660 |
| #18768 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
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| #40309 | ; Curators of the CIP; |
| #50138 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30540 |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68368 | Automatically annotated from API 20E . |
| #68379 | Automatically annotated from API Coryne . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #119090 | Collection of Institut Pasteur ; Curators of the CIP; CIP 102110 |
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BacDive in 2025: the core database for prokaryotic strain data