Brevibacterium casei (DSM 9658, 393)

Name: Brevibacterium casei (DSM 9658, 393)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1832

Type strain

Strain Designation 393

Culture col. no. DSM 9658 393

NCBI tax ID(s) 33889

Special Collections DSMZ

History DSMZ <- G. Funke, 393

Links

Brevibacterium casei 393 is a bacterium that was isolated from hip joint.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 48655

DSM 9658

@ref 20215

Last LPSN update 2026-05-29 08:25:21

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Brevibacteriaceae

Genus Brevibacterium

Species Brevibacterium casei

Full scientific name Brevibacterium casei Collins et al. 1983

BacDive ID	Other strains from **Brevibacterium casei** (40)	Type strain
1834	B. casei CMD1, DSM 20657, ATCC 35513, NCDO 2048, CCUG ... (type strain)
1831	B. casei 108, DSM 9657
1833	B. casei 585, DSM 9659
1835	B. casei R6, DSM 20658, NCDO 2051, JCM 2597, KCTC ...
130884	B. casei JV801, DSM 29377
135440	B. casei G7635, CIP 104165
136101	B. casei CIP 102489
137936	B. casei CIP 102233
138717	B. casei CIP 102347
145247	B. casei CCUG 27947
146169	B. casei CCUG 30494
146498	B. casei CCUG 31323
146542	B. casei CCUG 31402
146573	B. casei CCUG 31467
146728	B. casei CCUG 32028
146865	B. casei CCUG 32316
146936	B. casei CCUG 32476
146954	B. casei CCUG 32538
147249	B. casei CCUG 33193
147307	B. casei CCUG 33345
147907	B. casei CCUG 34468
148167	B. casei CCUG 34955
148401	B. casei CCUG 35377
148514	B. casei CCUG 35578
149205	B. casei CCUG 37266
151220	B. casei F3333, CCUG 43490, CIP 104166, ATCC 51396
151670	B. casei CCUG 44572
152474	B. casei CCUG 46895
153820	B. casei CCUG 51271
153894	B. casei CCUG 51543
154386	B. casei CCUG 53344
154481	B. casei CCUG 53784
154505	B. casei CCUG 53939
154807	B. casei CCUG 55282
158890	B. casei S 53/2 II white, DSM 110887
159987	B. casei 105895, DSM 105895
163370	B. casei JCM 2595, IFO 15228, KCTC 3086, NBRC 15228, ...
163371	B. casei JCM 2596, CCM 4101, KCTC 3087, NCDO 2050, ...
169210	B. casei TURIN101221_C9a1, DSM 113548
174368	B. casei SB303, DSM 112094

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	91.447
125438		90.5
125438	positive	91.003

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
3673	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
3673	positive	growth	37

Physiology and metabolism

Murein

@ref	Murein short key	Type
3673	A31	A1gamma m-Dpm-direct

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Other	#Bone
#Host Body-Site	#Limb	#Joint

Isolation

3673

Sample typehip joint

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3673	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM1602741v1 assembly for Brevibacterium casei FDAARGOS_902	complete	GCA_016027415	33889.21	8121420686	33889	97.05

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1602741v1 assembly for Brevibacterium casei FDAARGOS_902
NCBI: GCA_016027415

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	83.37	no
125439	gram_stain	BacteriaNetⓘ	positive	91.45	no
125439	motility	BacteriaNetⓘ	no	81.84	no
125439	spore_formation	BacteriaNetⓘ	no	89.48	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Brevibacterium casei strain FDAARGOS_902 strain Not applicable
PATRIC: 33889.21

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.00	no
125438	anaerobic	anaerobicⓘ	no	96.37	no
125438	spore-forming	spore-formingⓘ	no	76.05	no
125438	aerobic	aerobicⓘ	yes	88.91	no
125438	thermophilic	thermophileⓘ	no	97.50	no
125438	flagellated	motile2+ⓘ	no	90.50	no

Literature

References

#3673	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9658
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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