Salinarimonas rosea | Type strain | DSM 21201, CCTCC AA 208038, KCTC 22346, YIM YD3 | BacDiveID:1829

Strain identifier

BacDive ID: 1829

Type strain:

Species: Salinarimonas rosea

Culture col. no.: DSM 21201, CCTCC AA 208038, KCTC 22346, YIM YD3

Strain history: <- X.-L. Cui, YIM; YIM YD3 <- J.-H. Liu

NCBI tax ID(s): 1123229 (strain), 552063 (species)

SI-ID 405840

DSM 21201

Section

Salinarimonas rosea DSM 21201 is a facultative anaerobe, halotolerant, mesophilic bacterium that forms circular colonies and was isolated from sediment from a salt mine.

colony-forming
Gram-negative
motile
rod-shaped
facultative anaerobe
halotolerant
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Salinarimonadaceae*
	Genus	*Salinarimonas*
	Species	**Salinarimonas rosea**
	Full Scientific Name (LPSN)	Salinarimonas rosea Liu et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #23332]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.994

[Ref.: #23332]	Cell length	1.20-1.45 µm

[Ref.: #23332]	Cell width	0.4-1.0 µm

[Ref.: #23332]	Cell shape	rod-shaped

[Ref.: #23332]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %90.109

[Ref.: #23332]	Flagellum arrangement	monotrichous, polar

[Ref.: #23332]	Colony size	2.5 mm
[Ref.: #23332]	Colony color	pink
[Ref.: #23332]	Colony shape	circular
[Ref.: #23332]	Incubation period	5 days

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

MY medium

Culture medium growth

Culture medium

Nutrient agar (NA)

Culture medium growth

Culture medium

Trypticase Soy Agar (TSA)

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #15575]			growth	28 °C
[Ref.: #23332]			growth	15-37 °C
[Ref.: #23332]			optimum	28-30 °C

[Ref.: #15575]	Temperature range	mesophilic
[Ref.: #23332]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #23332]			optimum	7.0-8.0
[Ref.: #23332]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

Oxygen tolerance

facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.818

Halophily / tolerance level

halotolerant

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #23332]		NaCl		growth	0-5	%
[Ref.: #23332]		NaCl		optimum	3	%

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23332]		2-dehydro-D-gluconate ChEBI	+	builds acid from
[Ref.: #23332]		acetamide ChEBI	-	carbon source
[Ref.: #23332]		acetate ChEBI	+	carbon source
[Ref.: #23332]		benzoate ChEBI	-	carbon source
[Ref.: #23332]		casamino acids	+	carbon source
[Ref.: #23332]		cellobiose ChEBI	-	carbon source
[Ref.: #23332]		citrate ChEBI	+	carbon source
[Ref.: #23332]		D-fructose ChEBI	+	builds acid from
[Ref.: #23332]		D-fructose ChEBI	+	carbon source
[Ref.: #23332]		D-fucose ChEBI	+	builds acid from
[Ref.: #23332]		D-galactose ChEBI	-	carbon source
[Ref.: #23332]		D-galactose ChEBI	+	builds acid from
[Ref.: #23332]		D-glucose ChEBI	+	builds acid from
[Ref.: #23332]		D-glucose ChEBI	+	carbon source
[Ref.: #23332]		D-mannose ChEBI	+	builds acid from
[Ref.: #23332]		D-mannose ChEBI	+	carbon source
[Ref.: #23332]		D-ribose ChEBI	+	builds acid from
[Ref.: #23332]		D-xylose ChEBI	+	carbon source
[Ref.: #23332]		esculin ChEBI	+	degradation
[Ref.: #23332]		ethanol ChEBI	-	carbon source
[Ref.: #23332]		gelatin ChEBI	-	hydrolysis
[Ref.: #23332]		glycerol ChEBI	+	builds acid from
[Ref.: #23332]		glycerol ChEBI	+	carbon source
[Ref.: #23332]		glycogen ChEBI	+	carbon source
[Ref.: #23332]		hypoxanthine ChEBI	+	degradation
[Ref.: #23332]		inulin ChEBI	+	carbon source
[Ref.: #23332]		L-arabinose ChEBI	+	builds acid from
[Ref.: #23332]		L-arginine ChEBI	+	carbon source
[Ref.: #23332]		L-asparagine ChEBI	+	carbon source
[Ref.: #23332]		L-lysine ChEBI	+	carbon source
[Ref.: #23332]		L-ornithine ChEBI	+	carbon source
[Ref.: #23332]		L-proline ChEBI	+	carbon source
[Ref.: #23332]		L-rhamnose ChEBI	-	carbon source
[Ref.: #23332]		L-xylose ChEBI	-	carbon source
[Ref.: #23332]		maleic acid ChEBI	-	carbon source
[Ref.: #23332]		maltose ChEBI	+	builds acid from
[Ref.: #23332]		myo-inositol ChEBI	+	carbon source
[Ref.: #23332]		nitrate ChEBI	+	reduction
[Ref.: #23332]		peptone	+	carbon source
[Ref.: #23332]		pyruvate ChEBI	+	carbon source
[Ref.: #23332]		raffinose ChEBI	-	carbon source
[Ref.: #23332]		raffinose ChEBI	+	builds acid from
[Ref.: #23332]		ribose ChEBI	+	carbon source
[Ref.: #23332]		salicin ChEBI	-	carbon source
[Ref.: #23332]		sorbitol ChEBI	+	carbon source
[Ref.: #23332]		starch ChEBI	-	hydrolysis
[Ref.: #23332]		succinate ChEBI	+	carbon source
[Ref.: #23332]		sucrose ChEBI	+	builds acid from
[Ref.: #23332]		sucrose ChEBI	+	carbon source
[Ref.: #23332]		tartrate ChEBI	-	carbon source
[Ref.: #23332]		trehalose ChEBI	-	carbon source
[Ref.: #23332]		trehalose ChEBI	+	builds acid from
[Ref.: #23332]		tryptone	+	carbon source
[Ref.: #23332]		turanose ChEBI	+	builds acid from
[Ref.: #23332]		xanthine ChEBI	+	degradation
[Ref.: #23332]		xylose ChEBI	+	builds acid from
		Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #23332]		amikacin ChEBI	yes	30	µg (disc)
[Ref.: #23332]		ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #23332]		carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #23332]		cephalothin ChEBI	yes	30	µg (disc)
[Ref.: #23332]		chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #23332]		ciprofloxacin ChEBI	yes	5	µg (disc)
[Ref.: #23332]		erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #23332]		gentamicin ChEBI				yes	10	µg (disc)
[Ref.: #23332]		norfloxacin ChEBI	yes	10	µg (disc)
[Ref.: #23332]		penicillin g ChEBI	yes	10	µg (disc)

	Metabolite production	Metabolite	Production
[Ref.: #23332]		bacteriochlorophyll alpha ChEBI	no
[Ref.: #23332]		beta-hydroxybutyrate ChEBI	no
[Ref.: #23332]		hydrogen sulfide ChEBI	no
[Ref.: #23332]		indole ChEBI	no

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #23332]		Acid phosphatase	+	3.1.3.2
[Ref.: #23332]		Alkaline phosphatase	+	3.1.3.1
[Ref.: #23332]		alpha-chymotrypsin	+	3.4.21.1
[Ref.: #23332]		alpha-fucosidase	-	3.2.1.51
[Ref.: #23332]		alpha-galactosidase	-	3.2.1.22
[Ref.: #23332]		alpha-glucosidase	-	3.2.1.20
[Ref.: #23332]		alpha-mannosidase	-	3.2.1.24
[Ref.: #23332]		arginine dihydrolase	+	3.5.3.6
[Ref.: #23332]		beta-galactosidase	-	3.2.1.23
[Ref.: #23332]		beta-glucosidase	-	3.2.1.21
[Ref.: #23332]		beta-glucuronidase	-	3.2.1.31
[Ref.: #23332]		catalase	+	1.11.1.6
[Ref.: #23332]		cystine arylamidase	+	3.4.11.3
[Ref.: #23332]		cytochrome oxidase	+	1.9.3.1
[Ref.: #23332]		esterase (C 4)	+
[Ref.: #23332]		esterase lipase (C 8)	+
[Ref.: #23332]		leucine arylamidase	+	3.4.11.1
[Ref.: #23332]		lipase (C 14)	+
[Ref.: #23332]		lysine decarboxylase	+	4.1.1.18
[Ref.: #23332]		N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #23332]		naphthol-AS-BI-phosphohydrolase	+
[Ref.: #23332]		ornithine decarboxylase	+	4.1.1.17
[Ref.: #23332]		trypsin	+	3.4.21.4
[Ref.: #23332]		urease	+	3.5.1.5
[Ref.: #23332]		valine arylamidase	+
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15575]	Sample type/isolated from	sediment from a salt mine
[Ref.: #15575]	Geographic location (country and/or sea, region)	Yunnan
[Ref.: #15575]	Country	China
[Ref.: #15575]	Country ISO 3 Code	CHN
[Ref.: #15575]	Continent	Asia

[Ref.: #23332]	Geographic location (country and/or sea, region)	Moxie, Yunnan Province
[Ref.: #23332]	Enrichment culture	Marine agar 2216
[Ref.: #23332]	Enrichment culture duration	14 days
[Ref.: #23332]	Enrichment culture temperature	28 ̊C
[Ref.: #23332]	Isolation/enrichment procedure	dilution-plating
* marker position based on {}

Isolation sources categories

#Engineered	#Other	#Mine
#Condition	#Saline	-
#Environmental	#Terrestrial	#Sediment
#Environmental	#Terrestrial	#Geologic

What are isolation sources categories?

Global distribution of 16S sequence EU878006 (>99% sequence identity) for Salinarimonas from Microbeatlas

Aquatic Samples	1113
Soil Samples	576
Animal Samples	815
Plant Samples	125
Total Samples	2629

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

1

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15575]	Salinarimonas rosea strain YIM YD3 16S ribosomal RNA gene, partial sequence	EU878006	1412	ENA	552063 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Salinarimonas rosea DSM 21201	GCA_000429045	scaffold	GenBank	1123229 tax ID	*
[Ref.: #66792]	Salinarimonas rosea DSM 21201	1123229.3	wgs	PATRIC	1123229 tax ID	*
[Ref.: #66792]	Salinarimonas rosea DSM 21201	2522572188	draft	JGI IMG/M	1123229 tax ID	*

GC-content

71.8 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Salinarimonas rosea DSM 21201 DSM 21201 NCBI: GCA_000429045.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Salinarimonas rosea DSM 21201 DSM 21201 NCBI: GCA_000429045.1
[Ref.: #69480]	motile	yes	84.544	yes
[Ref.: #69480]	flagellated	yes	51.817	yes
[Ref.: #69480]	gram-positive	no	97.888	yes
[Ref.: #69480]	anaerobic	no	94.792	no
[Ref.: #69480]	aerobic	yes	72.459	yes
[Ref.: #69480]	halophile	no	78.907	no
[Ref.: #69480]	spore-forming	no	90.667	no
[Ref.: #69480]	glucose-util	yes	89.734	yes
[Ref.: #69480]	thermophile	no	96.714	yes
[Ref.: #69480]	glucose-ferment	no	91.801	no

Availability in culture collections External links

Culture collection no.

DSM 21201, CCTCC AA 208038, KCTC 22346, YIM YD3

SI-ID 405840

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salinarimonas soli sp. nov., isolated from soil.	Jin CZ, Jin L, Liu MJ, Kang MK, Park SH, Park DJ, Kim CJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.005095	2022	*
Pathogenicity	Functional characterization of sodium-pumping rhodopsins with different pumping properties.	Tsunoda SP, Prigge M, Abe-Yoshizumi R, Inoue K, Kozaki Y, Ishizuka T, Yawo H, Yizhar O, Kandori H	PLoS One	10.1371/journal.pone.0179232	2017	*
Phylogeny	Salinarimonas ramus sp. nov. and Tessaracoccus oleiagri sp. nov., isolated from a crude oil-contaminated saline soil.	Cai M, Wang L, Cai H, Li Y, Wang YN, Tang YQ, Wu XL	Int J Syst Evol Microbiol	10.1099/ijs.0.025932-0	2010	*
Phylogeny	Salinarimonas rosea gen. nov., sp. nov., a new member of the alpha-2 subgroup of the Proteobacteria.	Liu JH, Wang YX, Zhang XX, Wang ZG, Chen YG, Wen ML, Xu LH, Peng Q, Cui XL	Int J Syst Evol Microbiol	10.1099/ijs.0.006981-0	2009	*

References

#15575

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21201

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23332

Ji-Hui Liu, Yong-Xia Wang, Xiao-Xia Zhang, Zhi-Gang Wang, Yi-Guang Chen, Meng-Liang Wen, Li-Hua Xu, Qian Peng, Xiao-Long Cui: Salinarimonas rosea gen. nov., sp. nov., a new member of the a-2 subgroup of the Proteobacteria. IJSEM 60: 55 - 60 2010 ( DOI 10.1099/ijs.0.006981-0 , PubMed 19648350 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71474

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405840.1 )

* These data were automatically processed and therefore are not curated

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