Name: Rhodopseudomonas rhenobacensis R1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1827

Type strain:

Species: Rhodopseudomonas rhenobacensis

Strain Designation: R1

Culture col. no.: DSM 12706

Strain history: 2000, J.H. Klemme, IFMB, Univ. Bonn, Germany: strain Rb

NCBI tax ID(s): 87461 (species)

Section

Rhodopseudomonas rhenobacensis R1 is an anaerobe, mesophilic bacterium that was isolated from sediment of eutrophic pond.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Nitrobacteraceae*
	Genus	*Rhodopseudomonas*
	Species	**Rhodopseudomonas rhenobacensis**
	Full Scientific Name (LPSN)	Rhodopseudomonas rhenobacensis Hougardy et al. 2000

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.995

[Ref.: #69480]	Motility	yes Confidence in %93.93

Information on culture and growth conditions Culture and growth conditions

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Culture medium

ACID RHODOSPIRILLACEAE MEDIUM (DSMZ Medium 26)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

[Ref.: #39553]

Culture medium

MEDIUM 374 - for Rhodopseudomonas rhenobacensis

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Culture medium growth

[Ref.: #39553]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4793]			growth	28 °C
[Ref.: #39553]			growth	30 °C

[Ref.: #4793]	Temperature range	mesophilic
[Ref.: #39553]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4793]

Oxygen tolerance

anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.995

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4793]	Sample type/isolated from	sediment of eutrophic pond
[Ref.: #4793]	Geographic location (country and/or sea, region)	Rheinbach
[Ref.: #4793]	Country	Germany
[Ref.: #4793]	Country ISO 3 Code	DEU
[Ref.: #4793]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Pond (small)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB087719 (>99% sequence identity) for Rhodopseudomonas from Microbeatlas

Aquatic Samples	158
Soil Samples	280
Animal Samples	55
Plant Samples	62
Total Samples	555

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4793]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4793]	Rhodopseudomonas rhenobacensis gene for 16S rRNA, complete sequence	AB087719	1485	ENA	87461 tax ID
[Ref.: #20218]	Rhodopseudomonas rhenobacensis genes for 16S rRNA, 16S-23S ribosomal RNA intergeic spacer, tRNA-Ile, tRNA-Ala, 23S rRNA, partial and complete sequence, strain: Rb, clone: a	AB498835	1115	ENA	87461 tax ID	*
[Ref.: #20218]	Rhodopseudomonas rhenobacensis genes for 16S rRNA, 16S-23S ribosomal RNA intergeic spacer, tRNA-Ile, tRNA-Ala, 23S rRNA, partial and complete sequence, strain: Rb, clone: d	AB498836	1082	ENA	87461 tax ID	*
[Ref.: #20218]	Rhodopseudomonas rhenobacensis genes for 16S rRNA, 16S-23S ribosomal RNA intergeic spacer, tRNA-Ile, tRNA-Ala, 23S rRNA, partial and complete sequence, strain: Rb, clone: e	AB498837	1107	ENA	87461 tax ID	*
[Ref.: #20218]	Rhodopseudomonas rhenobacensis 16S rRNA gene, partial, clone 1	AJ132401	405	ENA	87461 tax ID	*
[Ref.: #20218]	Rhodopseudomonas rhenobacensis 16S rRNA gene, partial, clone 2	AJ132402	665	ENA	87461 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhodopseudomonas rhenobacensis DSM 12706	GCA_014203125	scaffold	GenBank	87461 tax ID	*
[Ref.: #66792]	Rhodopseudomonas rhenobacensis strain DSM 12706	87461.3	wgs	PATRIC	87461 tax ID	*
[Ref.: #66792]	Rhodopseudomonas rhenobacensis DSM 12706	2861707373	draft	JGI IMG/M	87461 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhodopseudomonas rhenobacensis DSM 12706 NCBI: GCA_014203125.1
[Ref.: #69480]	anaerobic	yes	70.066	yes
[Ref.: #69480]	gram-positive	no	99.995	no
[Ref.: #69480]	spore-forming	no	99.995	yes
[Ref.: #69480]	thermophile	no	99.969	yes
[Ref.: #69480]	motile	yes	93.93	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rhodopseudomonas rhenobacensis DSM 12706 NCBI: GCA_014203125.1
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

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Culture collection no.

DSM 12706

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Descriptions of Rhodopseudomonas parapalustris sp. nov., Rhodopseudomonas harwoodiae sp. nov. and Rhodopseudomonas pseudopalustris sp. nov., and emended description of Rhodopseudomonas palustris.	Ramana VV, Chakravarthy SK, Raj PS, Kumar BV, Shobha E, Ramaprasad EVV, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijs.0.026815-0	2011	*

References

#4793

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12706

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39553 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Rhodopseudomonas rhenobacensis DSM 12706

Rhodopseudomonas rhenobacensis DSM 12706

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