Rhodopseudomonas julia (DSM 11549, ATCC 51105, KR-11-67)

Name: Rhodopseudomonas julia (DSM 11549, ATCC 51105, KR-11-67)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1826

Type strain

Strain Designation KR-11-67

Culture col. no. DSM 11549 ATCC 51105 KR-11-67

NCBI tax ID(s) 200617

Special Collections DSMZ

History DSMZ <- ATCC <- J. F. Imhoff, KR-11-67 <- E. I. Kompantseva

Links

Rhodopseudomonas julia KR-11-67 is an anaerobe bacterium that was isolated from sulfur spring.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 42803

ATCC 51105,DSM 11549

@ref 20215

Last LPSN update 2026-05-29 08:25:21

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Nitrobacteraceae

Genus Rhodopseudomonas

Species Rhodopseudomonas julia

Full scientific name Rhodopseudomonas julia Kompantseva 1993

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	95.268

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
4411	RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27)		Medium recipe at MediaDive	Name: RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27) Composition: Disodium succinate 1.0 g/l KH2PO4 0.5 g/l Ammonium acetate 0.5 g/l NaCl 0.4 g/l NH4Cl 0.4 g/l MgSO4 x 7 H2O 0.4 g/l Yeast extract 0.3 g/l L-Cysteine HCl 0.3 g/l CaCl2 x 2 H2O 0.05 g/l Fe(III) citrate 0.005 g/l Resazurin 0.005 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Vitamin B12 Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
4411	positive	growth	28

Physiology and metabolism

Oxygen tolerance

4411

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.624

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Spring
#Condition	#Sulfuric	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
4411	sulfur spring	Kunashir Island, Golovin Volcano	Russia	RUS	Asia

Taxonmaps

69479

Global distribution of 16S sequence AY428572 (>99% sequence identity) for Hyphomicrobiales from Microbeatlas

Aquatic Samples	820
Soil Samples	981
Animal Samples	275
Plant Samples	78
Total Samples	2154

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4411	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3081351v1 assembly for Rhodopseudomonas julia DSM 11549	contig	GCA_030813515	200617.3	2926581363	200617	69.52

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Rhodopseudomonas julia strain DSM 11549 16S ribosomal RNA gene, partial sequence	AY428572	1396	200617
20218	Rhodopseudomonas julia strain DSM 11549 16S-23S ribosomal RNA intergenic spacer, partial sequence	EU786781	801	200617
4411	Rhodopseudomonas julia gene for 16S rRNA, complete sequence	AB087720	1463	200617

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3081351v1 assembly for Rhodopseudomonas julia DSM 11549
NCBI: GCA_030813515

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	85.48	no
125439	gram_stain	BacteriaNetⓘ	negative	95.27	no
125439	motility	BacteriaNetⓘ	yes	61.29	no
125439	spore_formation	BacteriaNetⓘ	no	99.62	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Shifting the genomic gold standard for the prokaryotic species definition.	Richter M, Rossello-Mora R.	Proc Natl Acad Sci U S A	10.1073/pnas.0906412106	2009
Genetics	Genome and metabolic network of "Candidatus Phaeomarinobacter ectocarpi" Ec32, a new candidate genus of Alphaproteobacteria frequently associated with brown algae.	Dittami SM, Barbeyron T, Boyen C, Cambefort J, Collet G, Delage L, Gobet A, Groisillier A, Leblanc C, Michel G, Scornet D, Siegel A, Tapia JE, Tonon T.	Front Genet	10.3389/fgene.2014.00241	2014
Phylogeny	Reclassification of Rhodobium marinum and Rhodobium pfennigii as Afifella marina gen. nov. comb. nov. and Afifella pfennigii comb. nov., a new genus of photoheterotrophic Alphaproteobacteria and emended descriptions of Rhodobium, Rhodobium orientis and Rhodobium gokarnense.	Urdiain M, Lopez-Lopez A, Gonzalo C, Busse HJ, Langer S, Kampfer P, Rossello-Mora R	Syst Appl Microbiol	10.1016/j.syapm.2008.07.002	2008

References

#4411	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11549
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Rhodopseudomonas julia (DSM 11549, ATCC 51105, KR-11-67)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_030813515

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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