Exiguobacterium aestuarii (DSM 16306, KCTC 19035, CCUG 55590)

Name: Exiguobacterium aestuarii (DSM 16306, KCTC 19035, CCUG 55590)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 18110

Type strain

Strain Designation TF-16

Culture col. no. DSM 16306 KCTC 19035 CCUG 55590 TF-16 DSM 10306 1 more

NCBI tax ID(s) 273527

Special Collections DSMZ CCUG KCTC CIP

History <- J.-H. Yoon; TF-16 <- IG Kim, KRIBB

Links

Exiguobacterium aestuarii TF-16 is an aerobe, mesophilic, motile prokaryote that was isolated from tidal flat.

motile rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 48804

DSM 16306,KCTC 19035,CIP 108732,VTT E-072701,CCUG 55590

@ref 20215

Last LPSN update 2026-02-09 11:22:23

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Exiguobacterium

Species Exiguobacterium aestuarii

Full scientific name Exiguobacterium aestuarii Kim et al. 2005

BacDive ID	Other strains from **Exiguobacterium aestuarii** (2)	Type strain
153862	E. aestuarii CCUG 51423
154695	E. aestuarii CCUG 54865

Morphology

Cell morphology

@ref	Cell shape	Flagellum arrangement	Gram stain
67771	rod-shaped	peritrichous
67771	coccus-shaped
67771			variable

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
6354	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6354	positive	growth	28	mesophilic
60657	positive	growth	30	mesophilic
67771	positive	growth	30-37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
60657	aerobe
67771	facultative anaerobe

Murein

@ref	Murein short key	Type
6354	A11.01	A3alpha L-Lys-Gly

Observation

67771

Observationquinones: MK-7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Tidal flat

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
6354	tidal flat	Yellow Sea, Daepo Beach	Republic of Korea	KOR	Asia
60657	Tidal flat	Yellow Sea,Daepo Beach	Republic of Korea	KOR	Asia
67771	From tidal flat; Daepo Beach	Yellow Sea, near Mokpo City	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AY594264 (>99% sequence identity) for Exiguobacterium from Microbeatlas

Aquatic Samples	453
Soil Samples	61
Animal Samples	1235
Plant Samples	41
Total Samples	1790

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6354	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM4266320v1 assembly for Exiguobacterium aestuarii CCUG 55590	contig	GCA_042663205			273527	75.27
124043	ASM4265268v1 assembly for Exiguobacterium aestuarii CCUG 55590	contig	GCA_042652685			273527	75.07
124043	ASM4266533v1 assembly for Exiguobacterium aestuarii CCUG 55590	scaffold	GCA_042665335			273527	74.67
66792	ASM2523473v1 assembly for Exiguobacterium aestuarii TF_16	contig	GCA_025234735	273527.8	8047746769	273527	43.32

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6354	Exiguobacterium aestuarii strain TF-16 16S ribosomal RNA gene, partial sequence	AY594264	1517		273527

GC content

6354

GC-content (mol%)48.6

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Exiguobacterium aestuarii TF_16
NCBI: GCA_025234735.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	74.43	yes
125438	anaerobic	anaerobicⓘ	no	96.18	yes
125438	aerobic	aerobicⓘ	yes	55.35	no
125438	spore-forming	spore-formingⓘ	no	53.78	no
125438	thermophilic	thermophileⓘ	no	96.24	yes
125438	flagellated	motile2+ⓘ	yes	78.24	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Exiguobacterium himgiriensis sp. nov. a novel member of the genus Exiguobacterium, isolated from the Indian Himalayas.	Singh NK, Raichand R, Kaur I, Kaur C, Pareek S, Mayilraj S	Antonie Van Leeuwenhoek	10.1007/s10482-012-9861-5	2012
Phylogeny	Exiguobacterium profundum sp. nov., a moderately thermophilic, lactic acid-producing bacterium isolated from a deep-sea hydrothermal vent.	Crapart S, Fardeau ML, Cayol JL, Thomas P, Sery C, Ollivier B, Combet-Blanc Y	Int J Syst Evol Microbiol	10.1099/ijs.0.64639-0	2007
Phylogeny	Exiguobacterium aestuarii sp. nov. and Exiguobacterium marinum sp. nov., isolated from a tidal flat of the Yellow Sea in Korea.	Kim IG, Lee MH, Jung SY, Song JJ, Oh TK, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.63308-0	2005

References

#6354	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16306
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#60657	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55590
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Exiguobacterium aestuarii (DSM 16306, KCTC 19035, CCUG 55590)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Murein

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042663205

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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