Exiguobacterium undae (CCUG 47136, DSM 14481, CIP 107162)

Name: Exiguobacterium undae (CCUG 47136, DSM 14481, CIP 107162)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 18108

Type strain

Strain Designation L2

Culture col. no. CCUG 47136 DSM 14481 CIP 107162 KCTC 3810 L2

NCBI tax ID(s) 1397693 169177

Special Collections DSMZ CCUG KCTC CIP Wink compendium

Links

Exiguobacterium undae L2 is an aerobe, mesophilic, motile prokaryote that was isolated from garden pond.

motile rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 16692

DSM 14481,CIP 107162,KCTC 3810,CCUG 47136,BCRC 17393,CCRC 17393

@ref 20215

Last LPSN update 2025-12-16 09:51:15

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Exiguobacterium

Species Exiguobacterium undae

Full scientific name Exiguobacterium undae Frühling et al. 2002

BacDive ID	Other strains from **Exiguobacterium undae** (2)	Type strain
18109	E. undae L3, DSM 14482
152720	E. undae CCUG 47471 A

Morphology

Cell morphology

@ref	Cell shape	Flagellum arrangement
67771	rod-shaped	peritrichous
67771
123730	rod-shaped

Colony morphology

@ref	Colony color	Incubation period	Medium used
18383	Sun yellow (1037)	10-14 days	ISP 2
18383	Yellow orange (2000)	10-14 days	ISP 3
18383	Sun yellow (1037)	10-14 days	ISP 4
18383	Sun yellow (1037)	10-14 days	ISP 5
18383	Sun yellow (1037)	10-14 days	ISP 6
18383	Sun yellow (1037)	10-14 days	ISP 7
57529		1 day
123730

Multicellular morphology

@ref	Forms multicellular complex	Medium name
18383		ISP 2
18383		ISP 3
18383		ISP 4
18383		ISP 5
18383		ISP 6
18383		ISP 7

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5373	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
5373	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
18383	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
18383	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
18383	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
18383	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
18383	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
18383	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
33087	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123730	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5373	positive	growth	28	mesophilic
18383	positive	optimum	28	mesophilic
33087	positive	growth	18	psychrophilic
57529	positive	growth	22-40
67771	positive	growth	37	mesophilic
123730	positive	growth	10-41
123730	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
57529	aerobe
67771	aerobe
123730	facultative anaerobe
125439	facultative anaerobe

Spore formation

67771

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
123730	NaCl	positive	growth	0-10 %

Murein

@ref	Murein short key	Type
5373	A11.01	A3alpha L-Lys-Gly

Observation

67771

Observationquinones: MK-7, MK-6, MK-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity
18383	22599 ChEBI	arabinose	+
68371	17057 ChEBI	cellobiose	-	from API 50CH acid
18383	62968 ChEBI	cellulose	+
68371	17108 ChEBI	D-arabinose	-	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	from API 50CH acid
68379	17634 ChEBI	D-glucose	+	from API Coryne
68371	62318 ChEBI	D-lyxose	-	from API 50CH acid
68379	16899 ChEBI	D-mannitol	+	from API Coryne
68371	16899 ChEBI	D-mannitol	+	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	from API 50CH acid
68379	16988 ChEBI	D-ribose	+	from API Coryne
68371	16988 ChEBI	D-ribose	+	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	from API 50CH acid
68379	65327 ChEBI	D-xylose	-	from API Coryne
68371	65327 ChEBI	D-xylose	-	from API 50CH acid
68371	17113 ChEBI	erythritol	-	from API 50CH acid
68379	4853 ChEBI	esculin	+	from API Coryne
123730	4853 ChEBI	esculin	+
18383	28757 ChEBI	fructose	+
68371	16813 ChEBI	galactitol	-	from API 50CH acid
68371	28066 ChEBI	gentiobiose	+	from API 50CH acid
18383	17234 ChEBI	glucose	+
68371	17754 ChEBI	glycerol	+	from API 50CH acid
68379	28087 ChEBI	glycogen	+	from API Coryne
68371	28087 ChEBI	glycogen	+	from API 50CH acid
123730	606565 ChEBI	hippurate	+
68371	15443 ChEBI	inulin	-	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	from API 50CH acid
68379	17716 ChEBI	lactose	-	from API Coryne
68371	17716 ChEBI	lactose	-	from API 50CH acid
68379	17306 ChEBI	maltose	+	from API Coryne
68371	17306 ChEBI	maltose	+	from API 50CH acid
18383	29864 ChEBI	mannitol	+
68371	6731 ChEBI	melezitose	-	from API 50CH acid
68371	28053 ChEBI	melibiose	-	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	from API 50CH acid
18383	17268 ChEBI	myo-inositol	+
68371	17268 ChEBI	myo-inositol	-	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	from API 50CH acid
68379	17632 ChEBI	nitrate	+	from API Coryne
123730	17632 ChEBI	nitrate	-
123730	17632 ChEBI	nitrate	+
123730	16301 ChEBI	nitrite	-
68371		Potassium 2-ketogluconate	-	from API 50CH acid
68371		Potassium 5-ketogluconate	-	from API 50CH acid
18383	16634 ChEBI	raffinose	+
68371	16634 ChEBI	raffinose	-	from API 50CH acid
18383	26546 ChEBI	rhamnose	+
68371	15963 ChEBI	ribitol	-	from API 50CH acid
68371	28017 ChEBI	starch	+	from API 50CH acid
18383	17992 ChEBI	sucrose	+
68379	17992 ChEBI	sucrose	-	from API Coryne
68371	17992 ChEBI	sucrose	+	from API 50CH acid
68371	27082 ChEBI	trehalose	+	from API 50CH acid
123730	35020 ChEBI	tributyrin	+
68371	32528 ChEBI	turanose	-	from API 50CH acid
68379	16199 ChEBI	urea	+	from API Coryne
68371	17151 ChEBI	xylitol	-	from API 50CH acid
18383	18222 ChEBI	xylose	-

Antibiotic resistance

@ref	Metabolite	Is antibiotic	Is sensitive	Is resistant
123730	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
123730	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
123730	15688 ChEBI	acetoin	+
123730	17234 ChEBI	glucose

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
123730	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
123730	amylase	+
68382	beta-galactosidase	+	3.2.1.23	from API zym
123730	beta-galactosidase	+	3.2.1.23
68379	beta-galactosidase	+	3.2.1.23	from API Coryne
68382	beta-glucosidase	+	3.2.1.21	from API zym
68379	beta-glucosidase	+	3.2.1.21	from API Coryne
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
123730	caseinase	+	3.4.21.50
123730	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
123730	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
123730	gamma-glutamyltransferase	-	2.3.2.2
123730	gelatinase	+
123730	lecithinase	-
68382	leucine arylamidase	-	3.4.11.1	from API zym
123730	lipase	-
68382	lipase (C 14)	-		from API zym
123730	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
123730	ornithine decarboxylase	-	4.1.1.17
123730	oxidase	+
123730	phenylalanine ammonia-lyase	-	4.3.1.24
68379	pyrazinamidase	+	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
123730	tryptophan deaminase	-
123730	tween esterase	-
123730	urease	-	3.5.1.5
68379	urease	+	3.5.1.5	from API Coryne
68382	valine arylamidase	-		from API zym

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
18383	+	+	-	+	-	+	+	-	+	+	+/-	not determinedn.d.	+	+	-	+	+	-	-	+	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
18383	not determinedn.d.	+	+	+	-	-	-	-	-	-	+	-	+	+	+	+	+	-	-	-
123730	-	+	+	+	-	-	-	-	-	-	+	-	-	+	-	+	+	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
123730	not determinedn.d.	+	-	-	-	+	-	-	-	-	-	+	+	+	-	-	-	-	+	-	-	-	+	+/-	+/-	+/-	+/-	-	+	-	-	+	+	-	-	-	+	+	-	+	-	-	-	-	-	-	-	+/-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
123730	not determinedn.d.	+	+	-	+	+	-	-	+	-	+	+	-	-	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Garden
#Environmental	#Aquatic	#Pond (small)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
5373	garden pond	Wolfenbüttel	Germany	DEU	Europe
57529	Garden pond		Germany	DEU	Europe
67771	From garden pond		Germany	DEU	Europe
123730	Garden pond		Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence AJ344151 (>99% sequence identity) for Exiguobacterium from Microbeatlas

Aquatic Samples	7226
Soil Samples	2271
Animal Samples	5645
Plant Samples	2061
Total Samples	17203

Interaction and safety

Risk assessment

@ref	Biosafety level
18383	1
5373	1
123730	1

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM62080v1 assembly for Exiguobacterium undae DSM 14481	scaffold	GCA_000620805	1397693.3	2556921110	1397693	74.7
66792	ASM165032v1 assembly for Exiguobacterium undae KCTC 3810	contig	GCA_001650325	169177.4	2831332355	169177	72.42

Genome browser: GCA_000620805

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Exiguobacterium undae 16S ribosomal RNA gene, partial sequence	DQ019165	1550	169177
5373	Exiguobacterium undae 16S rRNA gene, strain L2	AJ344151	1525	169177
124043	Exiguobacterium undae strain DSM 14481 16S ribosomal RNA gene, partial sequence.	OL347629	939	169177
124043	Exiguobacterium undae strain DSM 14481 16S ribosomal RNA gene, partial sequence.	OR660294	1085	169177
124043	Exiguobacterium undae 16S ribosomal RNA gene, partial sequence.	MN307288	1453	169177

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Exiguobacterium undae DSM 14481
NCBI: GCA_000620805

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	72.50	no
125439	motility	BacteriaNetⓘ	yes	69.30	no
125439	gram_stain	BacteriaNetⓘ	variable	81.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	91.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Exiguobacterium undae DSM 14481 DSM 14481
NCBI: GCA_000620805.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	80.61	yes
125438	anaerobic	anaerobicⓘ	no	96.36	yes
125438	aerobic	aerobicⓘ	yes	62.48	no
125438	spore-forming	spore-formingⓘ	yes	52.95	no
125438	thermophilic	thermophileⓘ	no	95.92	yes
125438	flagellated	motile2+ⓘ	yes	84.46	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Isolation and Characterization of Strain Exiguobacterium sp. KRL4, a Producer of Bioactive Secondary Metabolites from a Tibetan Glacier.	Tedesco P, Palma Esposito F, Masino A, Vitale GA, Tortorella E, Poli A, Nicolaus B, van Zyl LJ, Trindade M, de Pascale D.	Microorganisms	10.3390/microorganisms9050890	2021
Phylogeny	Bacterial and archaeal communities in Lake Nyos (Cameroon, Central Africa).	Tiodjio RE, Sakatoku A, Nakamura A, Tanaka D, Fantong WY, Tchakam KB, Tanyileke G, Ohba T, Hell VJ, Kusakabe M, Nakamura S, Ueda A.	Sci Rep	10.1038/srep06151	2014
	Microbial occurrence and antibiotic resistance in ready-to-go food items.	Cole ML, Singh OV.	J Food Sci Technol	10.1007/s13197-018-3180-4	2018
Phylogeny	Exiguobacterium flavidum sp. nov., isolated from the Red Maple Lake.	Meng X, Chang YQ, Zhou LY, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.004048	2020
Phylogeny	Exiguobacterium soli sp. nov., a psychrophilic bacterium from the McMurdo Dry Valleys, Antarctica.	Chaturvedi P, Prabahar V, Manorama R, Pindi PK, Bhadra B, Begum Z, Shivaji S	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/000067-0	2008
Phylogeny	Exiguobacterium indicum sp. nov., a psychrophilic bacterium from the Hamta glacier of the Himalayan mountain ranges of India.	Chaturvedi P, Shivaji S	Int J Syst Evol Microbiol	10.1099/ijs.0.64508-0	2006
Phylogeny	Exiguobacterium mexicanum sp. nov. and Exiguobacterium artemiae sp. nov., isolated from the brine shrimp Artemia franciscana.	Lopez-Cortes A, Schumann P, Pukall R, Stackebrandt E	Syst Appl Microbiol	10.1016/j.syapm.2005.09.007	2005
Phylogeny	Characterization of Exiguobacterium isolates from the Siberian permafrost. Description of Exiguobacterium sibiricum sp. nov.	Rodrigues DF, Goris J, Vishnivetskaya T, Gilichinsky D, Thomashow MF, Tiedje JM	Extremophiles	10.1007/s00792-005-0497-5	2006

References

#5373	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14481
#18383	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#33087	; Curators of the CIP;
#57529	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47136
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68371	Automatically annotated from API 50CH acid .
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#123730	Collection of Institut Pasteur ; Curators of the CIP; CIP 107162
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Exiguobacterium undae (CCUG 47136, DSM 14481, CIP 107162)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Murein

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API coryne

API zym

API 50CHac

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000620805

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media