Name: Geoglobus acetivorans SBH6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 18102

Type strain:

Species: Geoglobus acetivorans

Strain Designation: SBH6

Culture col. no.: DSM 21716, VKM B-2522

Strain history: <- G. B. Slobodkina, Winogradski Inst. Microbiol., RAS, Moscow; SBH6 <- G. B. Slobodkina and A. I. Slobodkin

NCBI tax ID(s): 565033 (species)

SI-ID 364713

DSM 21716, VKM B-2522

Section

Geoglobus acetivorans SBH6 is an anaerobe, hyperthermophilic archaeon that was isolated from fragment of hydrothermal structure, 4100 m depth.

anaerobe
hyperthermophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Archaeoglobi*
	Order	*Archaeoglobales*
	Family	*Archaeoglobaceae*
	Genus	*Geoglobus*
	Species	**Geoglobus acetivorans**
	Full Scientific Name (LPSN)	Geoglobus acetivorans Slobodkina et al. 2009

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15891]

Culture medium

GEOGLOBUS MEDIUM (DSMZ Medium 1210)

[Ref.: #15891]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #15891]			growth	80 °C

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Temperature range

hyperthermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #15891]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15891]	Sample type/isolated from	fragment of hydrothermal structure, 4100 m depth
[Ref.: #15891]	Geographic location (country and/or sea, region)	Mid-Atlantic Ridge, Ashadze hydrothermal field
[Ref.: #15891]	Country	International waters
[Ref.: #15891]	Geographic location	12.9725°/-44.8631°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Environmental	#Terrestrial	#Geologic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ216404 (>99% sequence identity) for Geoglobus acetivorans subclade from Microbeatlas

Aquatic Samples	1
Soil Samples
Animal Samples
Plant Samples
Total Samples	1

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15891]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15891]	Geoglobus acetivorans strain SBH6 16S ribosomal RNA gene, partial sequence	FJ216404	1417	ENA	565033 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Geoglobus acetivorans SBH6	GCA_015163485	contig	GenBank	565033 tax ID	*
[Ref.: #66792]	Geoglobus acetivorans SBH6	2634166507	complete	JGI IMG/M	565033 tax ID	*
[Ref.: #66792]	Geoglobus acetivorans SBH6	565033.4	complete	PATRIC	565033 tax ID	*

Availability in culture collections External links

[Ref.: #15891]

Culture collection no.

DSM 21716, VKM B-2522

[Ref.: #87090]

SI-ID 364713

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Geoglobus acetivorans sp. nov., an iron(III)-reducing archaeon from a deep-sea hydrothermal vent.	Slobodkina GB, Kolganova TV, Querellou J, Bonch-Osmolovskaya EA, Slobodkin AI	Int J Syst Evol Microbiol	10.1099/ijs.0.011080-0	2009	*

References

#15891

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21716

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#87090

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID364713.1 )

* These data were automatically processed and therefore are not curated

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