[Ref.: #48990] |
Sample type/isolated from |
Soy bean,Glycine hispida,nodule |
[Ref.: #48990] |
Country |
Japan |
[Ref.: #48990] |
Country ISO 3 Code |
JPN |
[Ref.: #48990] |
Continent |
Asia |
|
[Ref.: #120318] |
Sample type/isolated from |
Soybean |
* marker position based on {}
|
|
Isolation sources categories |
#Host |
#Plants |
#Herbaceous plants (Grass,Crops) |
#Host Body-Site |
#Plant |
#Root nodule |
|
|
-
Information on genomic background e.g. entries in nucleic sequence databass Sequence information
|
16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
|
|
Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #20218] |
Bradyrhizobium japonicum USDA 6 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
HQ143390 |
913 |
|
1037409 tax ID |
* |
[Ref.: #20218] |
Bradyrhizobium sp. (ATCC 10324) 16S ribosomal RNA (16S rRNA) gene fragment |
L41530 |
264 |
|
376 tax ID |
* |
[Ref.: #20218] |
Bradyrhizobium japonicum 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, complete sequence |
U69638 |
5146 |
|
1037409 tax ID |
* |
[Ref.: #20218] |
Bradyrhizobium japonicum strain DSM 30131 16S-23S intergenic spacer, partial sequence |
AF271643 |
815 |
|
375 tax ID |
* |
[Ref.: #20218] |
Bradyrhizobium japonicum bv. glycinearum strain DSM 30131 16S-23S ribosomal RNA intergenic spacer, tRNA-Ile and tRNA-Ala genes, complete sequence |
AY599102 |
791 |
|
305581 tax ID |
* |
[Ref.: #20218] |
B.japonicum 16S rRNA gene |
X71840 |
2882 |
|
375 tax ID |
* |
[Ref.: #20218] |
B.japonicum 16S rRNA gene |
X87272 |
1484 |
|
375 tax ID |
* |
[Ref.: #20218] |
Bradyrhizobium japonicum gene for 16S rRNA, complete sequence |
D11345 |
1484 |
|
375 tax ID |
* |
[Ref.: #20218] |
Bradyrhizobium japonicum gene for 16S rRNA, strain: IAM 12608 |
D12781 |
1441 |
|
375 tax ID |
* |
[Ref.: #20218] |
Bradyrhizobium japonicum strain LMG 6138 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA, partial sequence |
AF345255 |
839 |
|
375 tax ID |
* |
[Ref.: #20218] |
16S rRNA [Bradyrhizobium japonicum, LMG 6138T, rRNA Partial, 1440 nt] |
S46916 |
1440 |
|
375 tax ID |
* |
[Ref.: #20218] |
Bradyrhizobium japonicum partial 16S rRNA gene, strain LMG 6138 |
X66024 |
1441 |
|
375 tax ID |
* |
[Ref.: #20218] |
Bradyrhizobium japonicum gene for 16S ribosomal RNA, partial sequence, strain: NBRC 14783 |
AB510002 |
1414 |
|
375 tax ID |
* |
[Ref.: #20218] |
Bradyrhizobium japonicum DNA, 16S-23S rRNA ITS region, tRNA-Ile, tRNA-Ala, strain: NBRC 14783 |
AB573865 |
815 |
|
375 tax ID |
* |
[Ref.: #20218] |
Bradyrhizobium japonicum 16S ribosomal RNA gene, partial sequence |
AF362943 |
1039 |
|
375 tax ID |
* |
[Ref.: #20218] |
Bradyrhizobium japonicum DNA, 16S-23S ITS1 region, tRNA-Ile, tRNA-Ala, strain: USDA 6 |
AB100741 |
791 |
|
1037409 tax ID |
* |
[Ref.: #20218] |
Bradyrhizobium japonicum gene for 16S ribosomal RNA, partial sequence, strain: USDA6 |
AB231927 |
1400 |
|
1037409 tax ID |
* |
[Ref.: #20218] |
Bradyrhizobium japonicum gene for 16S ribosomal RNA, partial sequence, strain:USDA 6 |
D85412 |
264 |
|
1037409 tax ID |
* |
|
|
Genome sequence information: |
|
|
Sequence accession description |
Seq. accession number |
Assembly level |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #67770] |
Bradyrhizobium japonicum NBRC 14783 |
GCA_006539645 |
contig |
|
375 tax ID |
[Ref.: #66792] |
Bradyrhizobium japonicum strain NBRC 14783 |
375.87 |
wgs |
|
375 tax ID |
* |
|
|
-
Availability in culture collections External links
[Ref.: #9152] |
Culture collection no. |
DSM 30131, ATCC 10324, CCUG 27876, LMG 6138, CECT 530, JCM 20679, BCRC 13518, BCRC 80814, CCTM La 3681, CIP 106093, HAMBI 2314, IAM 12608, ICMP 2864, NBRC 14783, NCIMB 11477, NRRL B-4507, NRRL L-241, NZP 5549, OUT 30002, USDA 505, VKM B-1967 |
[Ref.: #71452] |
SI-ID 1344
|
* |
|
Literature: |
Only first 10 entries are displayed. Click here to see all.Click here to see only first 10 entries. |
|
Topic |
Title |
Authors |
Journal |
DOI |
Year |
|
Phylogeny |
Microbial cyclic beta-(1-->3),(1-->6)-glucans as potential drug carriers: Interaction studies between cyclic beta-glucans isolated from Bradyrhizobium japonicum and betulinic acid. |
Kambhampati NSV, Kar S, Pinnepalli SSK, Chelli J, Doble M |
Spectrochim Acta A Mol Biomol Spectrosc |
10.1016/j.saa.2018.05.106 |
2018 |
* |
Phylogeny |
Bosea minatitlanensis sp. nov., a strictly aerobic bacterium isolated from an anaerobic digester. |
Ouattara AS, Assih EA, Thierry S, Cayol JL, Labat M, Monroy O, Macarie H |
Int J Syst Evol Microbiol |
10.1099/ijs.0.02540-0 |
2003 |
* |
Phylogeny |
Phylogenetic analyses of Bradyrhizobium strains nodulating soybean (Glycine max) in Thailand with reference to the USDA strains of Bradyrhizobium. |
Ando S, Yokoyama T |
Can J Microbiol |
10.1139/w99-061 |
1999 |
* |
Phylogeny |
Phenotypic and genotypic characterization of bradyrhizobia nodulating the leguminous tree Acacia albida. |
Dupuy N, Willems A, Pot B, Dewettinck D, Vandenbruaene I, Maestrojuan G, Dreyfus B, Kersters K, Collins MD, Gillis M |
Int J Syst Bacteriol |
10.1099/00207713-44-3-461 |
1994 |
* |
Phylogeny |
Bacteriocin-like substances produced by Rhizobium japonicum and other slow-growing rhizobia. |
Gross DC, Vidaver AK |
Appl Environ Microbiol |
10.1128/aem.36.6.936-943.1978 |
1978 |
* |
Metabolism |
Gluconate catabolism in Rhizobium japonicum. |
Keele BB Jr, Hamilton PB, Elkan GH |
J Bacteriol |
10.1128/jb.101.3.698-704.1970 |
1970 |
* |
Metabolism |
Glucose catabolism in Rhizobium japonicum. |
Keele BB Jr, Hamilton PB, Elkan GH |
J Bacteriol |
10.1128/jb.97.3.1184-1191.1969 |
1969 |
* |
|
Cell-associated oligosaccharides of Bradyrhizobium spp. |
Miller KJ, Gore RS, Johnson R, Benesi AJ, Reinhold VN |
J Bacteriol |
10.1128/jb.172.1.136-142.1990 |
1990 |
* |
|
Conservation of a symbiotic DNA region in soybean root nodule bacteria. |
Hahn M, Hennecke H |
Appl Environ Microbiol |
10.1128/aem.53.9.2253-2255.1987 |
1987 |
* |
|
- References
-
#9152 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 30131
|
-
-
-
#32940 |
; Curators of the CIP;
|
-
#48990 |
Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG;
CCUG 27876
|
-
-
#67770 |
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
|
-
#68371 |
Automatically annotated from API 50CH acid .
|
-
#68382 |
Automatically annotated from API zym .
|
-
#69479 |
João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.:
MicrobeAtlas 1.0 beta
.
|
-
-
#71452 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID1344.1 )
|
-
#120318 |
Collection of Institut Pasteur ; Curators of the CIP;
CIP 106093
|
- * These data were automatically processed and therefore are not curated
Change proposal
Successfully sent
|
|