Name: Thermaerobacter marianensis 7p75a
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 18040

Type strain:

Species: Thermaerobacter marianensis

Strain Designation: 7p75a

Culture col. no.: DSM 12885, JCM 10246, ATCC 700841

Strain history: K. Takai 7p75a.

NCBI tax ID(s): 644966 (strain), 73919 (species)

SI-ID 44170

ATCC 700841, JCM 10246, DSM 12885

Section

Thermaerobacter marianensis 7p75a is an obligate aerobe, heterotroph, thermophilic bacterium that was isolated from marine mud at 10897 m depth.

Gram-variable
rod-shaped
heterotroph
obligate aerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Syntrophomonadaceae*
	Genus	*Thermaerobacter*
	Species	**Thermaerobacter marianensis**
	Full Scientific Name (LPSN)	Thermaerobacter marianensis Takai et al. 1999

Information on morphological and physiological properties Morphology

[Ref.: #43371]	Gram stain	variable
[Ref.: #69480]	Gram stain	positive Confidence in %98.348

[Ref.: #43371]	Cell length	2-7 µm

[Ref.: #43371]	Cell width	0.3-0.6 µm

[Ref.: #43371]	Cell shape	rod-shaped

[Ref.: #43371]	Motility	no

Multimedia content

[Ref.: #66793]

Caption:

electron microscopic image

[Ref.: #66793]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4853]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #4853]

Culture medium growth

[Ref.: #4853]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4853]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #4853]	growth	75 °C
[Ref.: #43371]	optimum	75 °C
[Ref.: #43371]	growth	50-80 °C
[Ref.: #67770]	growth	70 °C

[Ref.: #4853]	Temperature range	thermophilic
[Ref.: #43371]	Temperature range	thermophilic
[Ref.: #43371]	Temperature range	hyperthermophilic
[Ref.: #67770]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %98.976

	pH	Kind of pH		pH
[Ref.: #43371]			optimum	7-7.5
[Ref.: #43371]			growth	5.4-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43371]

Oxygen tolerance

obligate aerobe

[Ref.: #43371]

Nutrition type

heterotroph

[Ref.: #43371]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %90.282

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43371]		Marine salts		growth	0.5-5	%(w/v)
[Ref.: #43371]		Marine salts		optimum	2	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43371]	2-aminobutyrate ChEBI	+	growth
[Ref.: #43371]	acetate ChEBI	+	growth
[Ref.: #43371]	alanine ChEBI	+/-	growth
[Ref.: #43371]	arginine ChEBI	+	growth
[Ref.: #43371]	asparagine ChEBI	+	growth
[Ref.: #43371]	casamino acids	+	growth
[Ref.: #43371]	casein	+	growth
[Ref.: #43371]	cellobiose ChEBI	+	growth
[Ref.: #43371]	cellulose ChEBI	+/-	growth
[Ref.: #43371]	chitin ChEBI	+	growth
[Ref.: #43371]	cysteine ChEBI	+	growth
[Ref.: #43371]	galactose ChEBI	+	growth
[Ref.: #43371]	glucose ChEBI	+	growth
[Ref.: #43371]	glycerol 3-phosphate ChEBI	+	growth
[Ref.: #43371]	glycine ChEBI	+/-	growth
[Ref.: #43371]	histidine ChEBI	+	growth
[Ref.: #43371]	isoleucine ChEBI	+	growth
[Ref.: #43371]	L-glutamate ChEBI	+	growth
[Ref.: #43371]	lactate ChEBI	+	growth
[Ref.: #43371]	lactose ChEBI	+	growth
[Ref.: #43371]	leucine ChEBI	+/-	growth
[Ref.: #43371]	lysine ChEBI	+	growth
[Ref.: #43371]	malate ChEBI	+	growth
[Ref.: #43371]	maltose ChEBI	+	growth
[Ref.: #43371]	maltotriose ChEBI	+	growth
[Ref.: #43371]	mannitol ChEBI	+	growth
[Ref.: #43371]	methionine ChEBI	+/-	growth
[Ref.: #43371]	myo-inositol ChEBI	+	growth
[Ref.: #43371]	peptone	+	growth
[Ref.: #43371]	phenylalanine ChEBI	+/-	growth
[Ref.: #43371]	proline ChEBI	+	growth
[Ref.: #43371]	propionate ChEBI	+	growth
[Ref.: #43371]	pyruvate ChEBI	+	growth
[Ref.: #43371]	serine ChEBI	+	growth
[Ref.: #43371]	starch ChEBI	+	growth
[Ref.: #43371]	succinate ChEBI	+	growth
[Ref.: #43371]	sucrose ChEBI	+	growth
[Ref.: #43371]	tartrate ChEBI	+	growth
[Ref.: #43371]	threonine ChEBI	+	growth
[Ref.: #43371]	trehalose ChEBI	+	growth
[Ref.: #43371]	valine ChEBI	+	growth
[Ref.: #43371]	xylan ChEBI	+	growth
[Ref.: #43371]	xylose ChEBI	+	growth
[Ref.: #43371]	yeast extract	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	reductive acetyl coenzyme A pathway	100	7 of 7
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	denitrification	100	2 of 2
[Ref.: #66794]	phenylmercury acetate degradation	100	2 of 2
[Ref.: #66794]	vitamin B1 metabolism	92.31	12 of 13
[Ref.: #66794]	propionate fermentation	90	9 of 10
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	glutamate and glutamine metabolism	85.71	24 of 28
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	4-hydroxyphenylacetate degradation	80	8 of 10
[Ref.: #66794]	metabolism of amino sugars and derivatives	80	4 of 5
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	pyrimidine metabolism	77.78	35 of 45
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	ppGpp biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	arginine metabolism	70.83	17 of 24
[Ref.: #66794]	Entner Doudoroff pathway	70	7 of 10
[Ref.: #66794]	urea cycle	69.23	9 of 13
[Ref.: #66794]	alanine metabolism	68.97	20 of 29
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	cysteine metabolism	66.67	12 of 18
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	CO2 fixation in Crenarchaeota	66.67	6 of 9
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	66.67	8 of 12
[Ref.: #66794]	peptidoglycan biosynthesis	66.67	10 of 15
[Ref.: #66794]	NAD metabolism	66.67	12 of 18
[Ref.: #66794]	methionine metabolism	65.38	17 of 26
[Ref.: #66794]	purine metabolism	64.89	61 of 94
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	citric acid cycle	64.29	9 of 14
[Ref.: #66794]	proline metabolism	63.64	7 of 11
[Ref.: #66794]	tryptophan metabolism	63.16	24 of 38
[Ref.: #66794]	oxidative phosphorylation	62.64	57 of 91
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	coenzyme M biosynthesis	60	6 of 10
[Ref.: #66794]	phenol degradation	60	12 of 20
[Ref.: #66794]	factor 420 biosynthesis	60	3 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	60	3 of 5
[Ref.: #66794]	myo-inositol biosynthesis	60	6 of 10
[Ref.: #66794]	creatinine degradation	60	3 of 5
[Ref.: #66794]	gallate degradation	60	3 of 5
[Ref.: #66794]	3-chlorocatechol degradation	60	3 of 5
[Ref.: #66794]	lysine metabolism	59.52	25 of 42
[Ref.: #66794]	non-pathway related	57.89	22 of 38
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	cardiolipin biosynthesis	57.14	4 of 7
[Ref.: #66794]	glutathione metabolism	57.14	8 of 14
[Ref.: #66794]	d-mannose degradation	55.56	5 of 9
[Ref.: #66794]	histidine metabolism	55.17	16 of 29
[Ref.: #66794]	pentose phosphate pathway	54.55	6 of 11
[Ref.: #66794]	vitamin B6 metabolism	54.55	6 of 11
[Ref.: #66794]	metabolism of disaccharids	54.55	6 of 11
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	tetrahydrofolate metabolism	50	7 of 14
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	50	1 of 2
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	allantoin degradation	44.44	4 of 9
[Ref.: #66794]	benzoyl-CoA degradation	42.86	3 of 7
[Ref.: #66794]	lipid metabolism	41.94	13 of 31
[Ref.: #66794]	starch degradation	40	4 of 10
[Ref.: #66794]	glycogen metabolism	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	polyamine pathway	39.13	9 of 23
[Ref.: #66794]	degradation of hexoses	38.89	7 of 18
[Ref.: #66794]	phenylpropanoid biosynthesis	38.46	5 of 13
[Ref.: #66794]	androgen and estrogen metabolism	37.5	6 of 16
[Ref.: #66794]	ascorbate metabolism	36.36	8 of 22
[Ref.: #66794]	tyrosine metabolism	35.71	5 of 14
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	methane metabolism	33.33	1 of 3
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	3-phenylpropionate degradation	33.33	5 of 15
[Ref.: #66794]	4-hydroxymandelate degradation	33.33	3 of 9
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	nitrate assimilation	33.33	3 of 9
[Ref.: #66794]	degradation of pentoses	28.57	8 of 28
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	dTDPLrhamnose biosynthesis	25	2 of 8
[Ref.: #66794]	butanoate fermentation	25	1 of 4
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	23.08	3 of 13
[Ref.: #66794]	vitamin B12 metabolism	20.59	7 of 34
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4853]	Sample type/isolated from	marine mud at 10897 m depth
[Ref.: #4853]	Geographic location (country and/or sea, region)	Mariana Trench, Challenger Deep

[Ref.: #67770]	Sample type/isolated from	Mud, the Mariana Trench Challenger Deep at a depth of 10,897 m
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Mud (Sludge)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB011495 (>99% sequence identity) for Thermaerobacter marianensis from Microbeatlas

Aquatic Samples	7
Soil Samples	69
Animal Samples	43
Plant Samples	9
Total Samples	128

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4853]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Aerothermobacter marianas gene for 16S rRNA, partial sequence	AB011495	1488	ENA	644966 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermaerobacter marianensis DSM 12885	GCA_000184705	complete	GenBank	644966 tax ID	*
[Ref.: #66792]	Thermaerobacter marianensis DSM 12885	644966.3	complete	PATRIC	644966 tax ID	*
[Ref.: #66792]	Thermaerobacter marianensis 7p75a, DSM 12885	649633101	complete	JGI IMG/M	644966 tax ID	*

[Ref.: #4853]

GC-content

72.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thermaerobacter marianensis DSM 12885 DSM 12885 NCBI: GCA_000184705.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermaerobacter marianensis DSM 12885 DSM 12885 NCBI: GCA_000184705.1
[Ref.: #69480]	motile	yes	68.426	yes
[Ref.: #69480]	flagellated	no	82.681	no
[Ref.: #69480]	gram-positive	no	73.678	yes
[Ref.: #69480]	anaerobic	no	91.005	no
[Ref.: #69480]	aerobic	yes	71.767	no
[Ref.: #69480]	halophile	no	72.186	no
[Ref.: #69480]	spore-forming	no	66.53	yes
[Ref.: #69480]	glucose-util	yes	88.825	yes
[Ref.: #69480]	thermophile	yes	100	yes
[Ref.: #69480]	glucose-ferment	no	90.395	no

Availability in culture collections External links

[Ref.: #4853]

Culture collection no.

DSM 12885, JCM 10246, ATCC 700841

[Ref.: #87029]

SI-ID 44170

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Characterization of a novel thermostable N-acylhomoserine lactonase from the thermophilic bacterium Thermaerobacter marianensis.	Morohoshi T, Tominaga Y, Someya N, Ikeda T	J Biosci Bioeng	10.1016/j.jbiosc.2014.11.014	2014	*
Enzymology	Markerless Gene Deletion with Cytosine Deaminase in Thermus thermophilus Strain HB27.	Wang L, Hoffmann J, Watzlawick H, Altenbuchner J	Appl Environ Microbiol	10.1128/AEM.03524-15	2015	*
Phylogeny	Isolation and characterization of a thermostable esterase from a metagenomic library.	Shao H, Xu L, Yan Y	J Ind Microbiol Biotechnol	10.1007/s10295-013-1317-z	2013	*
Genetics	Complete genome sequence of Thermaerobacter marianensis type strain (7p75a).	Han C, Gu W, Zhang X, Lapidus A, Nolan M, Copeland A, Lucas S, Del Rio TG, Tice H, Cheng JF, Tapia R, Goodwin L, Pitluck S, Pagani I, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Schneider S, Rohde M, Goker M, Pukall R, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Detter JC	Stand Genomic Sci	10.4056/sigs.1373474	2010	*
Phylogeny	Thermaerobacter composti sp. nov., a novel extremely thermophilic bacterium isolated from compost.	Yabe S, Kato A, Hazaka M, Yokota A	J Gen Appl Microbiol	10.2323/jgam.55.323	2009	*
Phylogeny	Thermaerobacter marianensis gen. nov., sp. nov., an aerobic extremely thermophilic marine bacterium from the 11,000 m deep Mariana Trench.	Takai K, Inoue A, Horikoshi K	Int J Syst Bacteriol	10.1099/00207713-49-2-619	1999	*

References

#4853

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12885

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43371

Ken Takai, Akira Inoue, Koki Horikoshi: Thermaerobacter marianensis gen. nov., sp. nov., an aerobic extremely thermophilic marine bacterium from the 11000 m deep Mariana Trench. IJSEM 49: 619 - 628 1999 ( DOI 10.1099/00207713-49-2-619 , PubMed 10319484 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87029

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID44170.1 )

* These data were automatically processed and therefore are not curated

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Thermaerobacter marianensis DSM 12885 DSM 12885

Thermaerobacter marianensis DSM 12885 DSM 12885

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