Sulfobacillus acidophilus NAL is a thermophilic prokaryote that was isolated from coal spoil.
thermophilic genome sequence 16S sequence| @ref 20215 |
|
|
| Domain Bacillati |
| Phylum Bacillota |
| Class Clostridia |
| Order Eubacteriales |
| Family "Sulfobacillaceae" |
| Genus Sulfobacillus |
| Species Sulfobacillus acidophilus |
| Full scientific name Sulfobacillus acidophilus Norris et al. 1996 |
| @ref: | 66793 |
| multimedia content: | EM_DSM_10332_1.jpg |
| multimedia.multimedia content: | EM_DSM_10332_1.jpg |
| caption: | electron microscopic image |
| intellectual property rights: | © HZI/Manfred Rohde |
| manual_annotation: | 1 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 3909 | FERROUS SULFATE/YEAST EXTRACT MEDIUM (DSMZ Medium 1190) | Medium recipe at MediaDive | Name: FERROUS SULFATE/YEAST EXTRACT MEDIUM (DSMZ Medium 1190) Composition: FeSO4 x 7 H2O 5.56 g/l MgSO4 x 7 H2O 0.5 g/l (NH4)2SO4 0.45 g/l Yeast extract 0.2 g/l Na2SO4 x 10 H2O 0.15 g/l KH2PO4 0.05 g/l KCl 0.05 g/l Ca(NO3)2 x 4 H2O 0.014 g/l Distilled water | ||
| 3909 | ACIDIMICROBIUM MEDIUM (DSMZ Medium 709) | Medium recipe at MediaDive | Name: ACIDIMICROBIUM MEDIUM (DSMZ Medium 709) Composition: MgSO4 x 7 H2O 0.5 g/l (NH4)2SO4 0.4 g/l Yeast extract 0.25 g/l K2HPO4 0.2 g/l KCl 0.1 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water |
| @ref | Growth | Type | Temperature (°C) | Range | |
|---|---|---|---|---|---|
| 3909 | positive | growth | 45 | thermophilic |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | methylglyoxal degradation | 100 | 5 of 5 | ||
| 66794 | valine metabolism | 100 | 9 of 9 | ||
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | formaldehyde oxidation | 100 | 3 of 3 | ||
| 66794 | acetate fermentation | 100 | 4 of 4 | ||
| 66794 | vitamin K metabolism | 100 | 5 of 5 | ||
| 66794 | reductive acetyl coenzyme A pathway | 100 | 7 of 7 | ||
| 66794 | phenylacetate degradation (aerobic) | 100 | 5 of 5 | ||
| 66794 | adipate degradation | 100 | 2 of 2 | ||
| 66794 | aminopropanol phosphate biosynthesis | 100 | 2 of 2 | ||
| 66794 | biotin biosynthesis | 100 | 4 of 4 | ||
| 66794 | lipoate biosynthesis | 100 | 5 of 5 | ||
| 66794 | denitrification | 100 | 2 of 2 | ||
| 66794 | ceramide biosynthesis | 100 | 1 of 1 | ||
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | enterobactin biosynthesis | 100 | 3 of 3 | ||
| 66794 | photosynthesis | 100 | 14 of 14 | ||
| 66794 | palmitate biosynthesis | 100 | 22 of 22 | ||
| 66794 | pyrimidine metabolism | 91.11 | 41 of 45 | ||
| 66794 | 4-hydroxyphenylacetate degradation | 90 | 9 of 10 | ||
| 66794 | propionate fermentation | 90 | 9 of 10 | ||
| 66794 | alanine metabolism | 89.66 | 26 of 29 | ||
| 66794 | aspartate and asparagine metabolism | 88.89 | 8 of 9 | ||
| 66794 | CO2 fixation in Crenarchaeota | 88.89 | 8 of 9 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | molybdenum cofactor biosynthesis | 88.89 | 8 of 9 | ||
| 66794 | C4 and CAM-carbon fixation | 87.5 | 7 of 8 | ||
| 66794 | glutamate and glutamine metabolism | 85.71 | 24 of 28 | ||
| 66794 | vitamin B1 metabolism | 84.62 | 11 of 13 | ||
| 66794 | leucine metabolism | 84.62 | 11 of 13 | ||
| 66794 | purine metabolism | 84.04 | 79 of 94 | ||
| 66794 | glycolate and glyoxylate degradation | 83.33 | 5 of 6 | ||
| 66794 | vitamin B12 metabolism | 82.35 | 28 of 34 | ||
| 66794 | proline metabolism | 81.82 | 9 of 11 | ||
| 66794 | pentose phosphate pathway | 81.82 | 9 of 11 | ||
| 66794 | hydrogen production | 80 | 4 of 5 | ||
| 66794 | 3-chlorocatechol degradation | 80 | 4 of 5 | ||
| 66794 | threonine metabolism | 80 | 8 of 10 | ||
| 66794 | flavin biosynthesis | 80 | 12 of 15 | ||
| 66794 | glycogen metabolism | 80 | 4 of 5 | ||
| 66794 | starch degradation | 80 | 8 of 10 | ||
| 66794 | Entner Doudoroff pathway | 80 | 8 of 10 | ||
| 66794 | peptidoglycan biosynthesis | 80 | 12 of 15 | ||
| 66794 | histidine metabolism | 79.31 | 23 of 29 | ||
| 66794 | heme metabolism | 78.57 | 11 of 14 | ||
| 66794 | d-mannose degradation | 77.78 | 7 of 9 | ||
| 66794 | NAD metabolism | 77.78 | 14 of 18 | ||
| 66794 | serine metabolism | 77.78 | 7 of 9 | ||
| 66794 | phenylalanine metabolism | 76.92 | 10 of 13 | ||
| 66794 | ppGpp biosynthesis | 75 | 3 of 4 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | phenol degradation | 75 | 15 of 20 | ||
| 66794 | gluconeogenesis | 75 | 6 of 8 | ||
| 66794 | CMP-KDO biosynthesis | 75 | 3 of 4 | ||
| 66794 | sulfopterin metabolism | 75 | 3 of 4 | ||
| 66794 | isoleucine metabolism | 75 | 6 of 8 | ||
| 66794 | tryptophan metabolism | 73.68 | 28 of 38 | ||
| 66794 | methionine metabolism | 73.08 | 19 of 26 | ||
| 66794 | glutathione metabolism | 71.43 | 10 of 14 | ||
| 66794 | citric acid cycle | 71.43 | 10 of 14 | ||
| 66794 | tetrahydrofolate metabolism | 71.43 | 10 of 14 | ||
| 66794 | propanol degradation | 71.43 | 5 of 7 | ||
| 66794 | glycolysis | 70.59 | 12 of 17 | ||
| 66794 | coenzyme M biosynthesis | 70 | 7 of 10 | ||
| 66794 | sulfate reduction | 69.23 | 9 of 13 | ||
| 66794 | degradation of sugar alcohols | 68.75 | 11 of 16 | ||
| 66794 | octane oxidation | 66.67 | 2 of 3 | ||
| 66794 | acetoin degradation | 66.67 | 2 of 3 | ||
| 66794 | selenocysteine biosynthesis | 66.67 | 4 of 6 | ||
| 66794 | L-lactaldehyde degradation | 66.67 | 2 of 3 | ||
| 66794 | cyanate degradation | 66.67 | 2 of 3 | ||
| 66794 | isoprenoid biosynthesis | 65.38 | 17 of 26 | ||
| 66794 | d-xylose degradation | 63.64 | 7 of 11 | ||
| 66794 | metabolism of disaccharids | 63.64 | 7 of 11 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 62.5 | 5 of 8 | ||
| 66794 | dTDPLrhamnose biosynthesis | 62.5 | 5 of 8 | ||
| 66794 | ketogluconate metabolism | 62.5 | 5 of 8 | ||
| 66794 | urea cycle | 61.54 | 8 of 13 | ||
| 66794 | degradation of pentoses | 60.71 | 17 of 28 | ||
| 66794 | non-pathway related | 60.53 | 23 of 38 | ||
| 66794 | metabolism of amino sugars and derivatives | 60 | 3 of 5 | ||
| 66794 | factor 420 biosynthesis | 60 | 3 of 5 | ||
| 66794 | gallate degradation | 60 | 3 of 5 | ||
| 66794 | arachidonate biosynthesis | 60 | 3 of 5 | ||
| 66794 | ubiquinone biosynthesis | 57.14 | 4 of 7 | ||
| 66794 | androgen and estrogen metabolism | 56.25 | 9 of 16 | ||
| 66794 | cysteine metabolism | 55.56 | 10 of 18 | ||
| 66794 | lipid metabolism | 54.84 | 17 of 31 | ||
| 66794 | oxidative phosphorylation | 53.85 | 49 of 91 | ||
| 66794 | 3-phenylpropionate degradation | 53.33 | 8 of 15 | ||
| 66794 | glycine metabolism | 50 | 5 of 10 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 50 | 6 of 12 | ||
| 66794 | degradation of hexoses | 50 | 9 of 18 | ||
| 66794 | butanoate fermentation | 50 | 2 of 4 | ||
| 66794 | pantothenate biosynthesis | 50 | 3 of 6 | ||
| 66794 | lysine metabolism | 50 | 21 of 42 | ||
| 66794 | kanosamine biosynthesis II | 50 | 1 of 2 | ||
| 66794 | phenylmercury acetate degradation | 50 | 1 of 2 | ||
| 66794 | ethanol fermentation | 50 | 1 of 2 | ||
| 66794 | bile acid biosynthesis, neutral pathway | 47.06 | 8 of 17 | ||
| 66794 | arginine metabolism | 45.83 | 11 of 24 | ||
| 66794 | lipid A biosynthesis | 44.44 | 4 of 9 | ||
| 66794 | nitrate assimilation | 44.44 | 4 of 9 | ||
| 66794 | polyamine pathway | 43.48 | 10 of 23 | ||
| 66794 | tyrosine metabolism | 42.86 | 6 of 14 | ||
| 66794 | benzoyl-CoA degradation | 42.86 | 3 of 7 | ||
| 66794 | myo-inositol biosynthesis | 40 | 4 of 10 | ||
| 66794 | creatinine degradation | 40 | 2 of 5 | ||
| 66794 | degradation of sugar acids | 40 | 10 of 25 | ||
| 66794 | cellulose degradation | 40 | 2 of 5 | ||
| 66794 | carnitine metabolism | 37.5 | 3 of 8 | ||
| 66794 | acetyl CoA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | methane metabolism | 33.33 | 1 of 3 | ||
| 66794 | sphingosine metabolism | 33.33 | 2 of 6 | ||
| 66794 | 1,4-dihydroxy-6-naphthoate biosynthesis | 33.33 | 2 of 6 | ||
| 66794 | (5R)-carbapenem carboxylate biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | allantoin degradation | 33.33 | 3 of 9 | ||
| 66794 | 4-hydroxymandelate degradation | 33.33 | 3 of 9 | ||
| 66794 | cardiolipin biosynthesis | 28.57 | 2 of 7 | ||
| 66794 | chlorophyll metabolism | 27.78 | 5 of 18 | ||
| 66794 | dolichyl-diphosphooligosaccharide biosynthesis | 27.27 | 3 of 11 | ||
| 66794 | vitamin B6 metabolism | 27.27 | 3 of 11 | ||
| 66794 | cyclohexanol degradation | 25 | 1 of 4 | ||
| 66794 | lactate fermentation | 25 | 1 of 4 | ||
| 66794 | methanogenesis from CO2 | 25 | 3 of 12 | ||
| 66794 | toluene degradation | 25 | 1 of 4 | ||
| 66794 | phenylpropanoid biosynthesis | 23.08 | 3 of 13 | ||
| 66794 | arachidonic acid metabolism | 22.22 | 4 of 18 |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Engineered | #Waste | #Solid waste | |
| #Environmental | #Terrestrial | #Geologic |
| @ref | Sample type | Country | Country ISO 3 Code | Continent | |
|---|---|---|---|---|---|
| 3909 | coal spoil | United Kingdom | GBR | Europe |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 61.30 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 54.60 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 68.70 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 76.40 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 61.99 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 72.44 | no |
| 125438 | aerobic | aerobicⓘ | yes | 58.56 | no |
| 125438 | spore-forming | spore-formingⓘ | yes | 74.76 | no |
| 125438 | thermophilic | thermophileⓘ | yes | 53.61 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 60.46 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Bacterial Tolerance and Bioleaching in the Presence of Chloride. | Vardanyan N, Khachatryan A, Melkonyan Z, Abrahamyan N, Barseghyan S, Zhang R, Vardanyan A. | Materials (Basel) | 10.3390/ma18184407 | 2025 | ||
| Phylogeny | Insights into Adaptive Mechanisms of Extreme Acidophiles Based on Quorum Sensing/Quenching-Related Proteins. | Huang S, Liu X, Yang W, Ma L, Li H, Liu R, Qiu J, Li Y. | mSystems | 10.1128/msystems.01491-21 | 2022 | |
| Enzymology | Development of a whole-cell biocatalyst for diisobutyl phthalate degradation by functional display of a carboxylesterase on the surface of Escherichia coli. | Ding J, Zhou Y, Wang C, Peng Z, Mu Y, Tang X, Huang Z. | Microb Cell Fact | 10.1186/s12934-020-01373-6 | 2020 | |
| Enzymology | High-Resolution X-Ray Structures of Two Functionally Distinct Members of the Cyclic Amide Hydrolase Family of Toblerone Fold Enzymes. | Peat TS, Balotra S, Wilding M, Hartley CJ, Newman J, Scott C. | Appl Environ Microbiol | 10.1128/aem.03365-16 | 2017 | |
| Adaptive Evolution of Extreme Acidophile Sulfobacillus thermosulfidooxidans Potentially Driven by Horizontal Gene Transfer and Gene Loss. | Zhang X, Liu X, Liang Y, Guo X, Xiao Y, Ma L, Miao B, Liu H, Peng D, Huang W, Zhang Y, Yin H. | Appl Environ Microbiol | 10.1128/aem.03098-16 | 2017 | ||
| Characterization of SdGA, a cold-adapted glucoamylase from Saccharophagus degradans. | Wayllace NM, Hedin N, Busi MV, Gomez-Casati DF. | Biotechnol Rep (Amst) | 10.1016/j.btre.2021.e00625 | 2021 | ||
| Metabolism | Characterization and Genome Analysis of a Phthalate Esters-Degrading Strain Sphingobium yanoikuyae SHJ. | Feng L, Liu H, Cheng D, Mao X, Wang Y, Wu Z, Wu Q. | Biomed Res Int | 10.1155/2018/3917054 | 2018 | |
| Observation of coordinated RNA folding events by systematic cotranscriptional RNA structure probing. | Szyjka CE, Strobel EJ. | Nat Commun | 10.1038/s41467-023-43395-9 | 2023 | ||
| Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NAL(T)). | Anderson I, Chertkov O, Chen A, Saunders E, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mikhailova N, Pati A, Palaniappan K, Land M, Pan C, Rohde M, Pukall R, Goker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Mavromatis K. | Stand Genomic Sci | 10.4056/sigs.2736042 | 2012 | ||
| Roles and Regulation of Quorum Sensing of Acidophiles in Bioleaching: A Review. | Luo W, Li Y, Chen S, Liang Y, Liu X. | Microorganisms | 10.3390/microorganisms12030422 | 2024 | ||
| Metabolism | Cyanuric Acid Biodegradation via Biuret: Physiology, Taxonomy, and Geospatial Distribution. | Aukema KG, Tassoulas LJ, Robinson SL, Konopatski JF, Bygd MD, Wackett LP. | Appl Environ Microbiol | 10.1128/aem.01964-19 | 2020 | |
| Pathogenicity | Effects of a probiotic Lactobacillus acidophilus strain on feed tolerance in dogs with non-specific dietary sensitivity. | Pascher M, Hellweg P, Khol-Parisini A, Zentek J. | Arch Anim Nutr | 10.1080/17450390801892583 | 2008 | |
| Probiotic disruption of quorum sensing reduces virulence and increases cefoxitin sensitivity in methicillin-resistant Staphylococcus aureus. | Cella MA, Coulson T, MacEachern S, Badr S, Ahmadi A, Tabatabaei MS, Labbe A, Griffiths MW. | Sci Rep | 10.1038/s41598-023-31474-2 | 2023 | ||
| Cyanuric acid hydrolase: evolutionary innovation by structural concatenation. | Peat TS, Balotra S, Wilding M, French NG, Briggs LJ, Panjikar S, Cowieson N, Newman J, Scott C. | Mol Microbiol | 10.1111/mmi.12249 | 2013 | ||
| Phylogeny | Reclassification of Lactobacillus maltaromicus (Miller et al. 1974) DSM 20342(T) and DSM 20344 and Carnobacterium piscicola (Collins et al. 1987) DSM 20730(T) and DSM 20722 as Carnobacterium maltaromaticum comb. nov. | Mora D, Scarpellini M, Franzetti L, Colombo S, Galli A. | Int J Syst Evol Microbiol | 10.1099/ijs.0.02405-0 | 2003 | |
| Genetics | Omics on bioleaching: current and future impacts. | Martinez P, Vera M, Bobadilla-Fazzini RA. | Appl Microbiol Biotechnol | 10.1007/s00253-015-6903-8 | 2015 | |
| Genetics | Integrated Multi-omics Investigations Reveal the Key Role of Synergistic Microbial Networks in Removing Plasticizer Di-(2-Ethylhexyl) Phthalate from Estuarine Sediments. | Wei ST, Chen YL, Wu YW, Wu TY, Lai YL, Wang PH, Ismail W, Lee TH, Chiang YR. | mSystems | 10.1128/msystems.00358-21 | 2021 | |
| Genetics | Comparative genome analysis reveals metabolic versatility and environmental adaptations of Sulfobacillus thermosulfidooxidans strain ST. | Guo X, Yin H, Liang Y, Hu Q, Zhou X, Xiao Y, Ma L, Zhang X, Qiu G, Liu X. | PLoS One | 10.1371/journal.pone.0099417 | 2014 | |
| Responses of zinc recovery to temperature and mineral composition during sphalerite bioleaching process. | Xiao Y, Liu X, Fang J, Liang Y, Zhang X, Meng D, Yin H. | AMB Express | 10.1186/s13568-017-0491-1 | 2017 | ||
| Enzymology | Evaluation of a fluorescent lectin-based staining technique for some acidophilic mining bacteria. | Fife DJ, Bruhn DF, Miller KS, Stoner DL. | Appl Environ Microbiol | 10.1128/aem.66.5.2208-2210.2000 | 2000 | |
| Nickel-resistance determinants in Acidiphilium sp. PM identified by genome-wide functional screening. | San Martin-Uriz P, Mirete S, Alcolea PJ, Gomez MJ, Amils R, Gonzalez-Pastor JE. | PLoS One | 10.1371/journal.pone.0095041 | 2014 | ||
| Functional Comparison of Bacteria from the Human Gut and Closely Related Non-Gut Bacteria Reveals the Importance of Conjugation and a Paucity of Motility and Chemotaxis Functions in the Gut Environment. | Dobrijevic D, Abraham AL, Jamet A, Maguin E, van de Guchte M. | PLoS One | 10.1371/journal.pone.0159030 | 2016 | ||
| Metabolism | An Extracellular Tetrathionate Hydrolase from the Thermoacidophilic Archaeon Acidianus Ambivalens with an Activity Optimum at pH 1. | Protze J, Muller F, Lauber K, Nass B, Mentele R, Lottspeich F, Kletzin A. | Front Microbiol | 10.3389/fmicb.2011.00068 | 2011 | |
| Genetics | Sulfur Oxygenase Reductase (Sor) in the Moderately Thermoacidophilic Leaching Bacteria: Studies in Sulfobacillus thermosulfidooxidans and Acidithiobacillus caldus. | Janosch C, Remonsellez F, Sand W, Vera M. | Microorganisms | 10.3390/microorganisms3040707 | 2015 | |
| Metabolism | Association of purine asymmetry, strand-biased gene distribution and PolC within Firmicutes and beyond: a new appraisal. | Saha SK, Goswami A, Dutta C. | BMC Genomics | 10.1186/1471-2164-15-430 | 2014 | |
| Biotechnology | Sulfobacillus thermosulfidooxidans strain Cutipay enhances chalcopyrite bioleaching under moderate thermophilic conditions in the presence of chloride ion. | Bobadilla-Fazzini RA, Cortes MP, Maass A, Parada P | AMB Express | 10.1186/s13568-014-0084-1 | 2014 | |
| Enzymology | Newly identified thermostable esterase from Sulfobacillus acidophilus: properties and performance in phthalate ester degradation. | Zhang XY, Fan X, Qiu YJ, Li CY, Xing S, Zheng YT, Xu JH | Appl Environ Microbiol | 10.1128/AEM.02072-14 | 2014 | |
| Enzymology | "Candidatus Hydrogenisulfobacillus filiaventi" strain R50 gen. nov. sp. nov., a highly efficient producer of extracellular organic compounds from H2 and CO2. | Hogendoorn C, Pol A, de Graaf R, White PB, Mesman R, van Galen PM, van Alen TA, Cremers G, Jansen RS, Jetten MSM, Op den Camp HJM. | Front Microbiol | 10.3389/fmicb.2023.1151097 | 2023 | |
| Phylogeny | Sulfobacillus harzensis sp. nov., an acidophilic bacterium inhabiting mine tailings from a polymetallic mine. | Zhang R, Hedrich S, Jin D, Breuker A, Schippers A | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004871 | 2021 |
| #3909 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10332 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #66793 | Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 ) |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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