Name: Caldicellulosiruptor acetigenus X6B
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 18023

Type strain:

Species: Caldicellulosiruptor acetigenus

Strain Designation: X6B

Culture col. no.: DSM 7040, ATCC BAA-1149

Strain history: <- B. Ahring, X6B

NCBI tax ID(s): 1121259 (strain), 301953 (species)

SI-ID 48349

DSM 7040, ATCC BAA-1149

Special Collections

DSMZ

Section

Caldicellulosiruptor acetigenus X6B is an anaerobe bacterium that was isolated from hot spring.

anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Syntrophomonadaceae*
	Genus	*Caldicellulosiruptor*
	Species	**Caldicellulosiruptor acetigenus**
	Full Scientific Name (LPSN)	Caldicellulosiruptor acetigenus (Nielsen et al. 1994) Onyenwoke et al. 2006

	Synonym	Caldicellulosiruptor kristjanssonii
	Synonym	Caldicellulosiruptor lactoaceticus
	Synonym	Thermoanaerobium acetigenum

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2957]

Culture medium

CALDICELLULOSIRUPTOR ACETIGENUS MEDIUM (DSMZ Medium 144a)

[Ref.: #2957]

Culture medium growth

[Ref.: #2957]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2957]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2957]			growth	70 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #2957]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %97.34

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2957]	Sample type/isolated from	hot spring
[Ref.: #2957]	Country	Iceland
[Ref.: #2957]	Country ISO 3 Code	ISL
[Ref.: #2957]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2957]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2957]	Caldicellulosiruptor acetigenus clone 2 16S ribosomal RNA gene, partial sequence	AY772477	1413	GenBank ENA	301953 tax ID
[Ref.: #2957]	Caldicellulosiruptor acetigenus clone 1 16S ribosomal RNA gene, partial sequence	AY772476	1421	GenBank ENA	301953 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Caldicellulosiruptor acetigenus DSM 7040	GCA_000421725	contig	GenBank ENA	1121259 tax ID	*
[Ref.: #66792]	Caldicellulosiruptor acetigenus DSM 7040	1121259.3	wgs	PATRIC	1121259 tax ID	*
[Ref.: #66792]	Caldicellulosiruptor acetigenus DSM 7040	2524614853	draft	JGI IMG/M	1121259 tax ID	*

[Ref.: #2957]

GC-content

35.7 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Caldicellulosiruptor acetigenus DSM 7040 PATRIC: 1121259.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	68	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Caldicellulosiruptor acetigenus DSM 7040 PATRIC: 1121259.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	69.02	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	97.34	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	53.961	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	97.734	no
[Ref.: #69480]	thermophilic	thermophileⓘ	yes	85.624	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	74.35	no

Availability in culture collections External links

[Ref.: #2957]

Culture collection no.

DSM 7040, ATCC BAA-1149

[Ref.: #87012]

SI-ID 48349

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Thermoanaerobium acetigenum as Caldicellulosiruptor acetigenus comb. nov. and emendation of the genus description.	Onyenwoke RU, Lee YJ, Dabrowski S, Ahring BK, Wiegel J	Int J Syst Evol Microbiol	10.1099/ijs.0.63723-0	2006	*

References

#2957

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7040

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87012

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48349.1 )

* These data were automatically processed and therefore are not curated

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Caldicellulosiruptor acetigenus DSM 7040

Caldicellulosiruptor acetigenus DSM 7040

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