Name: Thermosediminibacter litoriperuensis JW/YJL-1230-7/2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 18014

Type strain:

Species: Thermosediminibacter litoriperuensis

Strain Designation: JW/YJL-1230-7/2

Culture col. no.: DSM 16647, ATCC BAA-1035

Strain history: <- J. Wiegel, Univ. of Georgia, Athens, USA <- Y.-J. Lee; JW/YJL-1230-7/2 {2003}

NCBI tax ID(s): 1123379 (strain), 291989 (species)

SI-ID 201404

ATCC BAA-1035, DSM 16647

Section

Thermosediminibacter litoriperuensis JW/YJL-1230-7/2 is an anaerobe, spore-forming, thermophilic bacterium that was isolated from core sample of deep sea sediment.

motile
spore-forming
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Thermosediminibacterales*
	Family	*Thermosediminibacteraceae*
	Genus	*Thermosediminibacter*
	Species	**Thermosediminibacter litoriperuensis**
	Full Scientific Name (LPSN)	Thermosediminibacter litoriperuensis Lee et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %96.167

[Ref.: #69480]	Motility	yes Confidence in %91.041

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6548]

Culture medium

THERMOTOGA ELFII MEDIUM (DSMZ Medium 664)

[Ref.: #6548]

Culture medium growth

[Ref.: #6548]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6548]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6548]			growth	64 °C

[Ref.: #6548]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %100

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6548]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %100

[Ref.: #69480]

Ability of spore formation

yes Confidence in %98.047

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6548]	Sample type/isolated from	core sample of deep sea sediment
[Ref.: #6548]	Geographic location (country and/or sea, region)	Peru Margin
[Ref.: #6548]	Country	Peru
[Ref.: #6548]	Country ISO 3 Code	PER
[Ref.: #6548]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Core sample
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6548]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6548]	Thermosediminibacter litoriperuensis strain JW/YJL-1230-2 16S ribosomal RNA gene, partial sequence	AY703479	1402	ENA	291989 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermosediminibacter litoriperuensis DSM 16647	GCA_008124715	scaffold	GenBank	291989 tax ID	*
[Ref.: #66792]	Thermosediminibacter litoriperuensis strain DSM 16647	291989.3	wgs	PATRIC	291989 tax ID	*
[Ref.: #66792]	Thermosediminibacter litoriperuensis DSM 16647	2599185220	draft	JGI IMG/M	291989 tax ID	*

[Ref.: #6548]

GC-content

50 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thermosediminibacter litoriperuensis DSM 16647 NCBI: GCA_008124715.1
[Ref.: #69481]	spore-forming	yes	61	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermosediminibacter litoriperuensis DSM 16647 NCBI: GCA_008124715.1
[Ref.: #69480]	motile	yes	89.57	no
[Ref.: #69480]	flagellated	no	89.849	no
[Ref.: #69480]	gram-positive	no	71.908	no
[Ref.: #69480]	anaerobic	yes	99.2	no
[Ref.: #69480]	aerobic	no	98.578	yes
[Ref.: #69480]	halophile	no	85.042	no
[Ref.: #69480]	spore-forming	yes	52.437	no
[Ref.: #69480]	glucose-util	yes	89.056	no
[Ref.: #69480]	thermophile	yes	100	no
[Ref.: #69480]	glucose-ferment	yes	56.735	no

Availability in culture collections External links

[Ref.: #6548]

Culture collection no.

DSM 16647, ATCC BAA-1035

[Ref.: #87001]

SI-ID 201404

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Caldanaerovirga acetigignens gen. nov., sp. nov., an anaerobic xylanolytic, alkalithermophilic bacterium isolated from Trego Hot Spring, Nevada, USA.	Wagner ID, Ahmed S, Zhao W, Zhang CL, Romanek CS, Rohde M, Wiegel J	Int J Syst Evol Microbiol	10.1099/ijs.0.005207-0	2009	*
Phylogeny	Thermovorax subterraneus, gen. nov., sp. nov., a thermophilic hydrogen-producing bacterium isolated from geothermally active underground mine.	Makinen AE, Kaksonen AH, Puhakka JA	Extremophiles	10.1007/s00792-009-0235-5	2009	*
Phylogeny	Thermosediminibacter oceani gen. nov., sp. nov. and Thermosediminibacter litoriperuensis sp. nov., new anaerobic thermophilic bacteria isolated from Peru Margin.	Lee YJ, Wagner ID, Brice ME, Kevbrin VV, Mills GL, Romanek CS, Wiegel J	Extremophiles	10.1007/s00792-005-0453-4	2005	*

References

#6548

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16647

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87001

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID201404.1 )

* These data were automatically processed and therefore are not curated

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Thermosediminibacter litoriperuensis DSM 16647

Thermosediminibacter litoriperuensis DSM 16647

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