Peptoniphilus koenoeneniae (DSM 22616, (WAL 2037I, ATCC BAA-1638)

Name: Peptoniphilus koenoeneniae (DSM 22616, (WAL 2037I, ATCC BAA-1638)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 18006

Type strain

Strain Designation (WAL 2037I

Culture col. no. DSM 22616 (WAL 2037I ATCC BAA-1638 CCUG 56067 WAL 18898

NCBI tax ID(s) 507751

Special Collections DSMZ CCUG Literature strains

History <- S. M. Finegold, Dept. Veteran Affairs Medical Center, Los Angeles, USA; WAL 18898

Links

Peptoniphilus koenoeneniae (WAL 2037I is an obligate anaerobe, Gram-positive, coccus-shaped bacterium that was isolated from human buttock abscess.

Gram-positive coccus-shaped obligate anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 407124

ATCC BAA-1638,DSM 22616,CCUG 56067

@ref 20215

Last LPSN update 2026-02-09 11:22:21

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Tissierellales

Family Peptoniphilaceae

Genus Peptoniphilus

Species Peptoniphilus koenoeneniae

Full scientific name Peptoniphilus koenoeneniae Ulger-Toprak et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Cell width	Cell shape
30263	positive	0.7 µm	coccus-shaped

Colony morphology

60850

Incubation period2-3 days

Pigmentation

30263

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16365	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
16365	positive	growth	37
30263	positive	growth	37
60850	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
16365	obligate anaerobe
30263	anaerobe
60850	anaerobe

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	+	hydrolysis	from API rID32A
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68380	27897 ChEBI	tryptophan	+	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
30263	35581 ChEBI	indole
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
30263	35581 ChEBI	indole	+
68380	35581 ChEBI	indole	+	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
68380	alpha-glucosidase	-	3.2.1.20	from API rID32A
68380	arginine dihydrolase	+	3.5.3.6	from API rID32A
68380	beta-galactosidase	-	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucosidase	-	3.2.1.21	from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	histidine arylamidase	+		from API rID32A
68380	L-arginine arylamidase	+		from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68380	pyrrolidonyl arylamidase	+	3.4.19.3	from API rID32A
68380	serine arylamidase	+		from API rID32A
68380	tryptophan deaminase	+	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	+		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
16365	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	+/-	-	+/-	+/-	+	+	+/-	+/-	+	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body-Site	-	-
#Host Body-Site	#Other	#Abscess

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
16365	human buttock abscess		California, Los Angeles	USA	USA	North America
60850	Human buttock abscess	2007-09-16	CA,Los Angeles	USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence EU526291 (>99% sequence identity) for Peptoniphilus koenoeneniae subclade from Microbeatlas

Aquatic Samples	269
Soil Samples	203
Animal Samples	21063
Plant Samples	94
Total Samples	21629

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16365	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3081287v1 assembly for Peptoniphilus koenoeneniae DSM 22616	contig	GCA_030812875	507751.3	2926469591	507751	72.28

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
30263	Peptoniphilus koenoeneniae strain WAL 18898 16S ribosomal RNA gene, partial sequence	EU526291	1420		507751

GC content

@ref	GC-content (mol%)	Method
16365	32.4	high performance liquid chromatography (HPLC)
30263	32.4
30263	33.4

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Cervicovaginal Microbiome and HPV: A Standardized Approach to 16S/ITS NGS and Microbial Community Profiling for Viral Association	Shen-Gunther J, Xia Q, Cai H, Wang Y.	Int J Mol Sci		2025
Pathogenicity	Changes in Gut Microbiota and Systemic Inflammation after Synbiotic Supplementation in Patients with Systemic Lupus Erythematosus: A Randomized, Double-Blind, Placebo-Controlled Trial.	Widhani A, Djauzi S, Suyatna FD, Dewi BE.	Cells	10.3390/cells11213419	2022
	Diagnostic and prognostic potential of the microbiome in ovarian cancer treatment response.	Asangba AE, Chen J, Goergen KM, Larson MC, Oberg AL, Casarin J, Multinu F, Kaufmann SH, Mariani A, Chia N, Walther-Antonio MRS.	Sci Rep	10.1038/s41598-023-27555-x	2023
	Changes in the vaginal microbiota across a gradient of urbanization.	Vargas-Robles D, Morales N, Rodriguez I, Nieves T, Godoy-Vitorino F, Alcaraz LD, Perez ME, Ravel J, Forney LJ, Dominguez-Bello MG.	Sci Rep	10.1038/s41598-020-69111-x	2020
Phylogeny	Peptoniphilus duerdenii sp. nov. and Peptoniphilus koenoeneniae sp. nov., isolated from human clinical specimens.	Ulger-Toprak N, Lawson PA, Summanen P, O'Neal L, Finegold SM	Int J Syst Evol Microbiol	10.1099/ijs.0.031997-0	2011

References

#16365	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22616
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26604	IJSEM 2336 2012 ( DOI 10.1099/ijs.0.031997-0 , PubMed 22140159 )
#30263	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26604
#60850	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56067
#68380	Automatically annotated from API rID32A .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Peptoniphilus koenoeneniae (DSM 22616, (WAL 2037I, ATCC BAA-1638)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_030812875

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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