Name: Peptoniphilus koenoeneniae (WAL 2037I
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 18006

Type strain:

Species: Peptoniphilus koenoeneniae

Strain Designation: (WAL 2037I

Culture col. no.: DSM 22616, ATCC BAA-1638, CCUG 56067, WAL 18898

Strain history: <- S. M. Finegold, Dept. Veteran Affairs Medical Center, Los Angeles, USA; WAL 18898

NCBI tax ID(s): 507751 (species)

SI-ID 407124

DSM 22616, CCUG 56067

Special Collections

Section

Peptoniphilus koenoeneniae (WAL 2037I is an obligate anaerobe, Gram-positive, coccus-shaped bacterium that was isolated from human buttock abscess.

coccus-shaped
Gram-positive
obligate anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Peptoniphilaceae*
	Genus	*Peptoniphilus*
	Species	**Peptoniphilus koenoeneniae**
	Full Scientific Name (LPSN)	Peptoniphilus koenoeneniae Ulger-Toprak et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30263]	Gram stain	positive

[Ref.: #30263]	Cell width	0.7 µm

[Ref.: #30263]	Cell shape	coccus-shaped

[Ref.: #60850]

Incubation period

2-3 days

[Ref.: #30263]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16365]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #16365]

Culture medium growth

[Ref.: #16365]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16365]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16365]	growth	37 °C
[Ref.: #30263]	growth	37 °C
[Ref.: #60850]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16365]	Oxygen tolerance	obligate anaerobe
[Ref.: #30263]	Oxygen tolerance	anaerobe
[Ref.: #60850]	Oxygen tolerance	anaerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	+	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	+	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #30263]		indole ChEBI	yes
[Ref.: #68380]		indole ChEBI	yes	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #30263]		indole ChEBI	+
[Ref.: #68380]		indole ChEBI	+	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	+	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	+		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	+		* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	+		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	+	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	+		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #16365]	12767	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	+/-	-	+/-	+/-	+	+	+/-	+/-	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16365]	Sample type/isolated from	human buttock abscess
[Ref.: #16365]	Geographic location (country and/or sea, region)	California, Los Angeles
[Ref.: #16365]	Country	USA
[Ref.: #16365]	Country ISO 3 Code	USA
[Ref.: #16365]	Continent	North America

[Ref.: #60850]	Sample type/isolated from	Human buttock abscess
[Ref.: #60850]	Sampling date	2007-09-16
[Ref.: #60850]	Geographic location (country and/or sea, region)	CA,Los Angeles
[Ref.: #60850]	Country	USA
[Ref.: #60850]	Country ISO 3 Code	USA
[Ref.: #60850]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	-	-
#Host Body-Site	#Other	#Abscess

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU526291 (>99% sequence identity) for Peptoniphilus koenoeneniae subclade from Microbeatlas

Aquatic Samples	269
Soil Samples	203
Animal Samples	21063
Plant Samples	94
Total Samples	21629

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16365]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30263]	Peptoniphilus koenoeneniae strain WAL 18898 16S ribosomal RNA gene, partial sequence	EU526291	1420	GenBank ENA	507751 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Peptoniphilus koenoeneniae DSM 22616	2926469591	draft	JGI IMG/M	507751 tax ID	*

[Ref.: #16365]	GC-content	32.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30263]	GC-content	32.4 mol%
[Ref.: #30263]	GC-content	33.4 mol%

Availability in culture collections External links

[Ref.: #16365]

Culture collection no.

DSM 22616, ATCC BAA-1638, CCUG 56067, WAL 18898

[Ref.: #86993]

SI-ID 407124

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Peptoniphilus duerdenii sp. nov. and Peptoniphilus koenoeneniae sp. nov., isolated from human clinical specimens.	Ulger-Toprak N, Lawson PA, Summanen P, O'Neal L, Finegold SM	Int J Syst Evol Microbiol	10.1099/ijs.0.031997-0	2011	*

References

#16365

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22616

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30263

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26604 (see below)

#60850 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56067

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86993

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407124.1 )

#26604

IJSEM 2336 2012 ( DOI 10.1099/ijs.0.031997-0 , PubMed 22140159 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Peptoniphilus koenoeneniae in external resources:
SILVA
BRENDA
PANGAEA
GBIF