Name: Peptoniphilus lacrimalis DSM 7455
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17998

Type strain:

Species: Peptoniphilus lacrimalis

Culture col. no.: DSM 7455, ATCC 51171, JCM 8139, CCUG 31350, GIFU 7667, CIP 103724, NCTC 13149

Strain history: GIFU 7667.

NCBI tax ID(s): 1122949 (strain), 33031 (species)

SI-ID 42842

ATCC 51171, JCM 8139, CCUG 31350, CIP 103724, DSM 7455, NCTC 13149, KCTC 5950

Other strains from Peptoniphilus lacrimalis

P. lacrimalis CCUG 45625
P. lacrimalis CCUG 47146
P. lacrimalis CCUG 59481

Section

Peptoniphilus lacrimalis DSM 7455 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from eye discharge.

Gram-positive
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Peptoniphilaceae*
	Genus	*Peptoniphilus*
	Species	**Peptoniphilus lacrimalis**
	Full Scientific Name (LPSN)	Peptoniphilus lacrimalis (Li et al. 1992) Ezaki et al. 2001

	Synonym	"Schleiferella* lacrimalis"*
	Synonym	Peptostreptococcus lacrimalis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #50541]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3160]

Culture medium

CHOPPED MEAT MEDIUM (DSMZ Medium 78)

[Ref.: #3160]

Culture medium growth

[Ref.: #3160]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3160]

Culture medium composition

expand / minimize

[Ref.: #3160]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #3160]

Culture medium growth

[Ref.: #3160]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3160]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #3160]	growth	37 °C
[Ref.: #50541]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #3160]	Temperature range	mesophilic
[Ref.: #50541]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3160]	Oxygen tolerance	anaerobe
[Ref.: #50541]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.999

[Ref.: #69481]	Ability of spore formation	no Confidence in %92
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.93

[Ref.: #3160]	Murein short key	A21.05
[Ref.: #3160]	Murein types	A4ß L-Orn-D-Glu

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	+		* from API rID32A
[Ref.: #68380]	histidine arylamidase	+		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	+		* from API rID32A
[Ref.: #68380]	leucine arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	+		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	+		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	+		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #3160]	13042	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	-	+	+	+	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3160]	Sample type/isolated from	eye discharge

[Ref.: #50541]	Sample type/isolated from	Human eye discharge

[Ref.: #67770]	Sample type/isolated from	Eye discharge
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Organ	#Eye
#Host Body Product	#Fluids	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB971812 (>99% sequence identity) for Peptoniphilus lacrimalis subclade from Microbeatlas

Aquatic Samples	1335
Soil Samples	1150
Animal Samples	71386
Plant Samples	344
Total Samples	74215

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3160]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Peptoniphilus lacrimalis gene for 16S ribosomal RNA, partial sequence, strain: JCM 8139	AB971812	1488	ENA	33031 tax ID
[Ref.: #20218]	Peptoniphilus lacrimalis strain CCUG 31350 16S ribosomal RNA gene, partial sequence	AF542230	1406	ENA	33031 tax ID	*
[Ref.: #20218]	Peptoniphilus lacrimalis gene for 16S ribosomal RNA, partial sequence, isolate: GIFU 7667	D14141	1373	ENA	33031 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Peptoniphilus lacrimalis DSM 7455	GCA_000378725	scaffold	GenBank	1122949 tax ID
[Ref.: #67770]	Peptoniphilus lacrimalis NCTC13149	GCA_900454715	contig	GenBank	33031 tax ID
[Ref.: #66792]	Peptoniphilus lacrimalis DSM 7455	1122949.3	wgs	PATRIC	1122949 tax ID	*
[Ref.: #66792]	Peptoniphilus lacrimalis strain NCTC13149	33031.7	wgs	PATRIC	33031 tax ID	*
[Ref.: #66792]	Peptoniphilus lacrimalis NCTC 13149	2834194177	draft	JGI IMG/M	33031 tax ID	*
[Ref.: #66792]	Peptoniphilus lacrimalis DSM 7455	2519899691	draft	JGI IMG/M	1122949 tax ID	*

[Ref.: #3160]	GC-content	30.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	30 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Peptoniphilus lacrimalis DSM 7455 DSM 7455 NCBI: GCA_000378725.1
[Ref.: #69481]	spore-forming	no	92	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Peptoniphilus lacrimalis DSM 7455 PATRIC: 1122949.3
[Ref.: #69480]	motile	no	92.795	no
[Ref.: #69480]	flagellated	no	98.202	no
[Ref.: #69480]	gram-positive	yes	93.846	no
[Ref.: #69480]	anaerobic	yes	98.795	yes
[Ref.: #69480]	aerobic	no	98.273	yes
[Ref.: #69480]	halophile	no	60.251	no
[Ref.: #69480]	spore-forming	no	85.003	no
[Ref.: #69480]	glucose-util	yes	72.601	no
[Ref.: #69480]	thermophile	no	97.946	yes
[Ref.: #69480]	glucose-ferment	yes	51.71	no

Availability in culture collections External links

[Ref.: #3160]

Culture collection no.

DSM 7455, ATCC 51171, JCM 8139, CCUG 31350, GIFU 7667, CIP 103724, NCTC 13149

[Ref.: #86985]

SI-ID 42842

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Three new species of the genus Peptostreptococcus isolated from humans: Peptostreptococcus vaginalis sp. nov., Peptostreptococcus lacrimalis sp. nov., and Peptostreptococcus lactolyticus sp. nov.	Li N, Hashimoto Y, Adnan S, Miura H, Yamamoto H, Ezaki T	Int J Syst Bacteriol	10.1099/00207713-42-4-602	1992	*

References

#3160

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7455

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#50541 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 31350

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86985

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42842.1 )

* These data were automatically processed and therefore are not curated

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Peptoniphilus lacrimalis DSM 7455 DSM 7455

Peptoniphilus lacrimalis DSM 7455

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