Finegoldia magna CCUG 12548 is an anaerobe, Gram-positive, coccus-shaped bacterium that was isolated from abdominal wound.
Gram-positive coccus-shaped anaerobe genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Bacillota |
| Class Clostridia |
| Order Tissierellales |
| Family Peptoniphilaceae |
| Genus Finegoldia |
| Species Finegoldia magna |
| Full scientific name Finegoldia magna (Prévot 1933) Murdoch and Shah 2000 |
| Synonyms (3) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 8842 | PYG MEDIUM (MODIFIED) (DSMZ Medium 104) | Medium recipe at MediaDive | Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water | ||
| 38459 | MEDIUM 20 - for Anaerobic bacteria | Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml) | |||
| 120749 | CIP Medium 20 | Medium recipe at CIP |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 96.458 |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 8842 | A12.01 | A3alpha' L-Lys-Gly |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68381 | 40585 ChEBI | alpha-cyclodextrin | - | builds acid from | from API rID32STR |
| 68381 | 29016 ChEBI | arginine | + | hydrolysis | from API rID32STR |
| 120749 | 17108 ChEBI | D-arabinose | - | degradation | |
| 68381 | 18333 ChEBI | D-arabitol | - | builds acid from | from API rID32STR |
| 120749 | 15824 ChEBI | D-fructose | - | degradation | |
| 120749 | 17634 ChEBI | D-glucose | - | degradation | |
| 68381 | 16899 ChEBI | D-mannitol | - | builds acid from | from API rID32STR |
| 68380 | 16024 ChEBI | D-mannose | - | fermentation | from API rID32A |
| 120749 | 16024 ChEBI | D-mannose | - | degradation | |
| 68381 | 16988 ChEBI | D-ribose | - | builds acid from | from API rID32STR |
| 68381 | 16443 ChEBI | D-tagatose | - | builds acid from | from API rID32STR |
| 120749 | 4853 ChEBI | esculin | - | hydrolysis | |
| 68381 | 28087 ChEBI | glycogen | - | builds acid from | from API rID32STR |
| 68381 | 606565 ChEBI | hippurate | + | hydrolysis | from API rID32STR |
| 68381 | 30849 ChEBI | L-arabinose | - | builds acid from | from API rID32STR |
| 68381 | 17716 ChEBI | lactose | - | builds acid from | from API rID32STR |
| 120749 | 17716 ChEBI | lactose | - | degradation | |
| 68381 | 17306 ChEBI | maltose | - | builds acid from | from API rID32STR |
| 120749 | 17306 ChEBI | maltose | - | degradation | |
| 68381 | 6731 ChEBI | melezitose | - | builds acid from | from API rID32STR |
| 68381 | 28053 ChEBI | melibiose | - | builds acid from | from API rID32STR |
| 68381 | 320055 ChEBI | methyl beta-D-glucopyranoside | - | builds acid from | from API rID32STR |
| 68380 | 17632 ChEBI | nitrate | - | reduction | from API rID32A |
| 120749 | 17632 ChEBI | nitrate | - | reduction | |
| 120749 | 16301 ChEBI | nitrite | - | reduction | |
| 68381 | 27941 ChEBI | pullulan | - | builds acid from | from API rID32STR |
| 68380 | 16634 ChEBI | raffinose | - | fermentation | from API rID32A |
| 68381 | 16634 ChEBI | raffinose | - | builds acid from | from API rID32STR |
| 68381 | 30911 ChEBI | sorbitol | - | builds acid from | from API rID32STR |
| 68381 | 17992 ChEBI | sucrose | - | builds acid from | from API rID32STR |
| 120749 | 17992 ChEBI | sucrose | - | degradation | |
| 68381 | 27082 ChEBI | trehalose | - | builds acid from | from API rID32STR |
| 68380 | 27897 ChEBI | tryptophan | - | energy source | from API rID32A |
| 68381 | 16199 ChEBI | urea | + | hydrolysis | from API rID32STR |
| 68380 | 16199 ChEBI | urea | - | hydrolysis | from API rID32A |
| @ref | Chebi-ID | Metabolite | Voges-proskauer-test | Indole test | |
|---|---|---|---|---|---|
| 68381 | 15688 ChEBI | acetoin | - | from API rID32STR | |
| 68380 | 35581 ChEBI | indole | - | from API rID32A |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68380 | alanine arylamidase | + | 3.4.11.2 | from API rID32A |
| 68381 | Alanyl-Phenylalanyl-Proline arylamidase | - | from API rID32STR | |
| 68381 | alkaline phosphatase | - | 3.1.3.1 | from API rID32STR |
| 68382 | alkaline phosphatase | - | 3.1.3.1 | from API zym |
| 68380 | alpha-arabinosidase | - | 3.2.1.55 | from API rID32A |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68380 | alpha-fucosidase | - | 3.2.1.51 | from API rID32A |
| 68381 | alpha-galactosidase | - | 3.2.1.22 | from API rID32STR |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68380 | alpha-galactosidase | - | 3.2.1.22 | from API rID32A |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68380 | alpha-glucosidase | - | 3.2.1.20 | from API rID32A |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68381 | arginine dihydrolase | + | 3.5.3.6 | from API rID32STR |
| 68381 | beta-galactosidase | - | 3.2.1.23 | from API rID32STR |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 120749 | beta-galactosidase | - | 3.2.1.23 | |
| 68380 | beta-galactosidase | - | 3.2.1.23 | from API rID32A |
| 68380 | beta-Galactosidase 6-phosphate | - | from API rID32A | |
| 68381 | beta-glucosidase | - | 3.2.1.21 | from API rID32STR |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68380 | beta-glucosidase | - | 3.2.1.21 | from API rID32A |
| 68381 | beta-glucuronidase | - | 3.2.1.31 | from API rID32STR |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68380 | beta-glucuronidase | - | 3.2.1.31 | from API rID32A |
| 68381 | beta-mannosidase | - | 3.2.1.25 | from API rID32STR |
| 120749 | catalase | - | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | - | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 120749 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 120749 | gelatinase | - | ||
| 68380 | glutamyl-glutamate arylamidase | - | from API rID32A | |
| 68380 | glycin arylamidase | + | from API rID32A | |
| 68381 | glycyl tryptophan arylamidase | - | from API rID32STR | |
| 68380 | histidine arylamidase | + | from API rID32A | |
| 68380 | L-arginine arylamidase | + | from API rID32A | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68380 | leucine arylamidase | + | 3.4.11.1 | from API rID32A |
| 68380 | leucyl glycin arylamidase | + | 3.4.11.1 | from API rID32A |
| 68382 | lipase (C 14) | - | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68381 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API rID32STR |
| 68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API rID32A |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 120749 | oxidase | - | ||
| 68380 | proline-arylamidase | - | 3.4.11.5 | from API rID32A |
| 68381 | pyrrolidonyl arylamidase | + | 3.4.19.3 | from API rID32STR |
| 68380 | pyrrolidonyl arylamidase | + | 3.4.19.3 | from API rID32A |
| 68380 | serine arylamidase | + | from API rID32A | |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 68380 | tryptophan deaminase | - | 4.1.99.1 | from API rID32A |
| 68380 | tyrosine arylamidase | + | from API rID32A | |
| 68381 | urease | + | 3.5.1.5 | from API rID32STR |
| 120749 | urease | - | 3.5.1.5 | |
| 68380 | urease | - | 3.5.1.5 | from API rID32A |
| 68382 | valine arylamidase | - | from API zym |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | lipoate biosynthesis | 100 | 5 of 5 | ||
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | ||
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | ||
| 66794 | vitamin B1 metabolism | 92.31 | 12 of 13 | ||
| 66794 | threonine metabolism | 90 | 9 of 10 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | reductive acetyl coenzyme A pathway | 85.71 | 6 of 7 | ||
| 66794 | palmitate biosynthesis | 81.82 | 18 of 22 | ||
| 66794 | peptidoglycan biosynthesis | 80 | 12 of 15 | ||
| 66794 | glycine betaine biosynthesis | 80 | 4 of 5 | ||
| 66794 | photosynthesis | 78.57 | 11 of 14 | ||
| 66794 | molybdenum cofactor biosynthesis | 77.78 | 7 of 9 | ||
| 66794 | aspartate and asparagine metabolism | 77.78 | 7 of 9 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | acetate fermentation | 75 | 3 of 4 | ||
| 66794 | cardiolipin biosynthesis | 71.43 | 5 of 7 | ||
| 66794 | phenylalanine metabolism | 69.23 | 9 of 13 | ||
| 66794 | purine metabolism | 69.15 | 65 of 94 | ||
| 66794 | acetoin degradation | 66.67 | 2 of 3 | ||
| 66794 | selenocysteine biosynthesis | 66.67 | 4 of 6 | ||
| 66794 | L-lactaldehyde degradation | 66.67 | 2 of 3 | ||
| 66794 | formaldehyde oxidation | 66.67 | 2 of 3 | ||
| 66794 | octane oxidation | 66.67 | 2 of 3 | ||
| 66794 | NAD metabolism | 66.67 | 12 of 18 | ||
| 66794 | glycolysis | 64.71 | 11 of 17 | ||
| 66794 | pyrimidine metabolism | 64.44 | 29 of 45 | ||
| 66794 | oxidative phosphorylation | 62.64 | 57 of 91 | ||
| 66794 | C4 and CAM-carbon fixation | 62.5 | 5 of 8 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 62.5 | 5 of 8 | ||
| 66794 | methionine metabolism | 61.54 | 16 of 26 | ||
| 66794 | starch degradation | 60 | 6 of 10 | ||
| 66794 | hydrogen production | 60 | 3 of 5 | ||
| 66794 | tetrahydrofolate metabolism | 57.14 | 8 of 14 | ||
| 66794 | propanol degradation | 57.14 | 4 of 7 | ||
| 66794 | serine metabolism | 55.56 | 5 of 9 | ||
| 66794 | glutamate and glutamine metabolism | 53.57 | 15 of 28 | ||
| 66794 | sulfopterin metabolism | 50 | 2 of 4 | ||
| 66794 | gluconeogenesis | 50 | 4 of 8 | ||
| 66794 | aminopropanol phosphate biosynthesis | 50 | 1 of 2 | ||
| 66794 | ethanol fermentation | 50 | 1 of 2 | ||
| 66794 | glycolate and glyoxylate degradation | 50 | 3 of 6 | ||
| 66794 | CMP-KDO biosynthesis | 50 | 2 of 4 | ||
| 66794 | adipate degradation | 50 | 1 of 2 | ||
| 66794 | biotin biosynthesis | 50 | 2 of 4 | ||
| 66794 | butanoate fermentation | 50 | 2 of 4 | ||
| 66794 | alanine metabolism | 48.28 | 14 of 29 | ||
| 66794 | d-mannose degradation | 44.44 | 4 of 9 | ||
| 66794 | glutathione metabolism | 42.86 | 6 of 14 | ||
| 66794 | ubiquinone biosynthesis | 42.86 | 3 of 7 | ||
| 66794 | isoprenoid biosynthesis | 42.31 | 11 of 26 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 41.67 | 5 of 12 | ||
| 66794 | arachidonate biosynthesis | 40 | 2 of 5 | ||
| 66794 | glycogen metabolism | 40 | 2 of 5 | ||
| 66794 | glycine metabolism | 40 | 4 of 10 | ||
| 66794 | methylglyoxal degradation | 40 | 2 of 5 | ||
| 66794 | non-pathway related | 39.47 | 15 of 38 | ||
| 66794 | sulfate reduction | 38.46 | 5 of 13 | ||
| 66794 | phenylpropanoid biosynthesis | 38.46 | 5 of 13 | ||
| 66794 | ketogluconate metabolism | 37.5 | 3 of 8 | ||
| 66794 | isoleucine metabolism | 37.5 | 3 of 8 | ||
| 66794 | tryptophan metabolism | 36.84 | 14 of 38 | ||
| 66794 | vitamin B6 metabolism | 36.36 | 4 of 11 | ||
| 66794 | pentose phosphate pathway | 36.36 | 4 of 11 | ||
| 66794 | tyrosine metabolism | 35.71 | 5 of 14 | ||
| 66794 | histidine metabolism | 34.48 | 10 of 29 | ||
| 66794 | acetyl CoA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | enterobactin biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | valine metabolism | 33.33 | 3 of 9 | ||
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | CO2 fixation in Crenarchaeota | 33.33 | 3 of 9 | ||
| 66794 | lipid A biosynthesis | 33.33 | 3 of 9 | ||
| 66794 | leucine metabolism | 30.77 | 4 of 13 | ||
| 66794 | myo-inositol biosynthesis | 30 | 3 of 10 | ||
| 66794 | lipid metabolism | 29.03 | 9 of 31 | ||
| 66794 | chlorophyll metabolism | 27.78 | 5 of 18 | ||
| 66794 | cysteine metabolism | 27.78 | 5 of 18 | ||
| 66794 | degradation of hexoses | 27.78 | 5 of 18 | ||
| 66794 | ascorbate metabolism | 27.27 | 6 of 22 | ||
| 66794 | dolichyl-diphosphooligosaccharide biosynthesis | 27.27 | 3 of 11 | ||
| 66794 | flavin biosynthesis | 26.67 | 4 of 15 | ||
| 66794 | lysine metabolism | 26.19 | 11 of 42 | ||
| 66794 | degradation of sugar alcohols | 25 | 4 of 16 | ||
| 66794 | lactate fermentation | 25 | 1 of 4 | ||
| 66794 | cyclohexanol degradation | 25 | 1 of 4 | ||
| 66794 | carnitine metabolism | 25 | 2 of 8 | ||
| 66794 | dTDPLrhamnose biosynthesis | 25 | 2 of 8 | ||
| 66794 | degradation of pentoses | 25 | 7 of 28 | ||
| 66794 | urea cycle | 23.08 | 3 of 13 | ||
| 66794 | phosphatidylethanolamine bioynthesis | 23.08 | 3 of 13 | ||
| 66794 | nitrate assimilation | 22.22 | 2 of 9 | ||
| 66794 | polyamine pathway | 21.74 | 5 of 23 | ||
| 66794 | arginine metabolism | 20.83 | 5 of 24 |
| @ref | URE | ADH (Arg) | alpha GAL | beta GAL | beta-Galactosidase 6-phosphatebeta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta-N-Acetyl-beta-glucosaminidasebeta NAG | MNE | RAF | GDC | alpha FUC | Reduction of nitrateNIT | IND | PAL | L-arginine arylamidaseArgA | ProA | LGA | Phenylalanine arylamidasePheA | Leucine arylamidaseLeuA | PyrA | Tyrosine arylamidaseTyrA | Alanine arylamidaseAlaA | Glycin arylamidaseGlyA | Histidine arylamidaseHisA | Glutamyl-glutamate arylamidaseGGA | Serine arylamidaseSerA | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8842 | - | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | + | - | + | + | + | + | + | + | - | + | |
| 45744 | - | + | - | - | - | - | - | - | - | - | - | - | + | - | - | - | + | + | - | + | + | + | + | + | + | + | + | - | + |
| @ref | ADH (Arg) | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | Acid from alpha-cyclodextrinCDEX | Acetoin production (Voges Proskauer test)VP | Alanyl-Phenylalanyl-Proline arylamidaseAPPA | beta GAL | Pyrrolidonyl arylamidasePyrA | N-Acetyl-glucosaminidasebeta NAG | Glycyl-tryptophan arylamidaseGTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Acidification of methyl beta-D-glucopyranosideMbeta DG | TAG | beta MAN | URE | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45744 | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | + | - | - | - | - | - | - | - | - | + |
Global distribution of 16S sequence AB109770 (>99% sequence identity) for Finegoldia magna subclade from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM1018v1 assembly for Finegoldia magna ATCC 29328 | complete | 334413 | 99.15 | ||||
| 124043 | ASM2073562v1 assembly for Finegoldia magna FDAARGOS_1557 | complete | 1260 | 98.62 | ||||
| 66792 | Finegoldia magna strain FDAARGOS_1557 | complete | 1260 | 98.52 |
| 8842 | GC-content (mol%)31.6 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate anaerobe | 95.90 | no |
| 125439 | motility | BacteriaNetⓘ | no | 70.88 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 85.53 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 96.46 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 85.14 | no |
| 125438 | anaerobic | anaerobicⓘ | yes | 92.91 | yes |
| 125438 | aerobic | aerobicⓘ | no | 98.16 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 71.95 | no |
| 125438 | thermophilic | thermophileⓘ | no | 94.25 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 86.95 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Phylogeny | Identification of clinically important anaerobic bacteria by an oligonucleotide array. | Lin YT, Vaneechoutte M, Huang AH, Teng LJ, Chen HM, Su SL, Chang TC. | J Clin Microbiol | 10.1128/jcm.01620-09 | 2010 | |
| Genetics | Finegoldia magna Isolated from Orthopedic Joint Implant-Associated Infections. | Soderquist B, Bjorklund S, Hellmark B, Jensen A, Bruggemann H. | J Clin Microbiol | 10.1128/jcm.00866-17 | 2017 | |
| Parvimonas micra, an oral pathobiont associated with colorectal cancer, epigenetically reprograms human colonocytes. | Bergsten E, Mestivier D, Donnadieu F, Pedron T, Barau C, Meda LT, Mettouchi A, Lemichez E, Gorgette O, Chamaillard M, Vaysse A, Volant S, Doukani A, Sansonetti PJ, Sobhani I, Nigro G. | Gut Microbes | 10.1080/19490976.2023.2265138 | 2023 | ||
| Genetics | Pan-genome analysis of the genus Finegoldia identifies two distinct clades, strain-specific heterogeneity, and putative virulence factors. | Bruggemann H, Jensen A, Nazipi S, Aslan H, Meyer RL, Poehlein A, Brzuszkiewicz E, Al-Zeer MA, Brinkmann V, Soderquist B. | Sci Rep | 10.1038/s41598-017-18661-8 | 2018 | |
| Genome Sequence of Parvimonas micra Strain A293, Isolated from an Abdominal Abscess from a Patient in the United Kingdom. | Ang MY, Dymock D, Tan JL, Thong MH, Tan QK, Wong GJ, Paterson IC, Choo SW. | Genome Announc | 10.1128/genomea.01025-13 | 2013 | ||
| Gram-positive anaerobic cocci guard skin homeostasis by regulating host-defense mechanisms. | van der Krieken DA, Rikken G, Ederveen THA, Jansen PAM, Rodijk-Olthuis D, Meesters LD, van Vlijmen-Willems IMJJ, van Cranenbroek B, van der Molen RG, Schalkwijk J, van den Bogaard EH, Zeeuwen PLJM. | iScience | 10.1016/j.isci.2023.106483 | 2023 | ||
| Pathogenicity | Lantibiotics Produced by Oral Inhabitants as a Trigger for Dysbiosis of Human Intestinal Microbiota. | Yonezawa H, Motegi M, Oishi A, Hojo F, Higashi S, Nozaki E, Oka K, Takahashi M, Osaki T, Kamiya S. | Int J Mol Sci | 10.3390/ijms22073343 | 2021 | |
| Pathogenicity | In vitro activity of tomopenem (CS-023/RO4908463) against anaerobic bacteria. | Tanaka K, Mikamo H, Nakao K, Ichiishi T, Goto T, Yamagishi Y, Watanabe K. | Antimicrob Agents Chemother | 10.1128/aac.00595-08 | 2009 | |
| Phylogeny | Molecular profiling of oral microbiota in jawbone samples of bisphosphonate-related osteonecrosis of the jaw. | Wei X, Pushalkar S, Estilo C, Wong C, Farooki A, Fornier M, Bohle G, Huryn J, Li Y, Doty S, Saxena D. | Oral Dis | 10.1111/j.1601-0825.2012.01916.x | 2012 | |
| Pathogenicity | In vitro antimicrobial activity of razupenem (SMP-601, PTZ601) against anaerobic bacteria. | Tran CM, Tanaka K, Yamagishi Y, Goto T, Mikamo H, Watanabe K. | Antimicrob Agents Chemother | 10.1128/aac.01038-10 | 2011 | |
| Genetics | Genomes of model organisms: know thy tools. | Galperin MY. | Environ Microbiol | 10.1111/j.1462-2920.2008.01656.x | 2008 | |
| Chronic wound microbiome colonization on mouse model following cryogenic preservation. | Tipton CD, Sanford NE, Everett JA, Gabrilska RA, Wolcott RD, Rumbaugh KP, Phillips CD. | PLoS One | 10.1371/journal.pone.0221565 | 2019 | ||
| Genetics | Complete genome sequence of a serotype 11A, ST62 Streptococcus pneumoniae invasive isolate. | Camilli R, Bonnal RJ, Del Grosso M, Iacono M, Corti G, Rizzi E, Marchetti M, Mulas L, Iannelli F, Superti F, Oggioni MR, De Bellis G, Pantosti A. | BMC Microbiol | 10.1186/1471-2180-11-25 | 2011 | |
| Metabolism | Identification of molecular mechanisms used by Finegoldia magna to penetrate and colonize human skin. | Murphy EC, Morgelin M, Reinhardt DP, Olin AI, Bjorck L, Frick IM. | Mol Microbiol | 10.1111/mmi.12773 | 2014 | |
| Enzymology | Metabolic modelling of chronic wound microbiota predicts mutualistic interactions that drive community composition. | Phalak P, Henson MA. | J Appl Microbiol | 10.1111/jam.14421 | 2019 | |
| Rapid PCR Detection of Mycoplasma hominis, Ureaplasma urealyticum, and Ureaplasma parvum. | Cunningham SA, Mandrekar JN, Rosenblatt JE, Patel R. | Int J Bacteriol | 10.1155/2013/168742 | 2013 | ||
| Metabolism | Identification of a novel protein promoting the colonization and survival of Finegoldia magna, a bacterial commensal and opportunistic pathogen. | Frick IM, Karlsson C, Morgelin M, Olin AI, Janjusevic R, Hammarstrom C, Holst E, de Chateau M, Bjorck L. | Mol Microbiol | 10.1111/j.1365-2958.2008.06439.x | 2008 | |
| Pathogenicity | In vitro antianaerobic activity of DX-619, a new des-fluoro(6) quinolone. | Tanaka K, Mikamo H, Nakao K, Watanabe K. | Antimicrob Agents Chemother | 10.1128/aac.00639-06 | 2006 | |
| Pathogenicity | In Vitro Antibacterial Properties of Cefiderocol, a Novel Siderophore Cephalosporin, against Gram-Negative Bacteria. | Ito A, Sato T, Ota M, Takemura M, Nishikawa T, Toba S, Kohira N, Miyagawa S, Ishibashi N, Matsumoto S, Nakamura R, Tsuji M, Yamano Y. | Antimicrob Agents Chemother | 10.1128/aac.01454-17 | 2018 | |
| Enzymology | Evolutionary diversification and characterization of the eubacterial gene family encoding DXR type II, an alternative isoprenoid biosynthetic enzyme. | Carretero-Paulet L, Lipska A, Perez-Gil J, Sangari FJ, Albert VA, Rodriguez-Concepcion M. | BMC Evol Biol | 10.1186/1471-2148-13-180 | 2013 | |
| Metabolism | A new family of enzymes catalyzing the first committed step of the methylerythritol 4-phosphate (MEP) pathway for isoprenoid biosynthesis in bacteria. | Sangari FJ, Perez-Gil J, Carretero-Paulet L, Garcia-Lobo JM, Rodriguez-Concepcion M. | Proc Natl Acad Sci U S A | 10.1073/pnas.1001962107 | 2010 | |
| Analysis of the mobilization functions of the vancomycin resistance transposon Tn1549, a member of a new family of conjugative elements. | Tsvetkova K, Marvaud JC, Lambert T. | J Bacteriol | 10.1128/jb.00680-09 | 2010 | ||
| Plasma antibodies to oral bacteria and risk of pancreatic cancer in a large European prospective cohort study. | Michaud DS, Izard J, Wilhelm-Benartzi CS, You DH, Grote VA, Tjonneland A, Dahm CC, Overvad K, Jenab M, Fedirko V, Boutron-Ruault MC, Clavel-Chapelon F, Racine A, Kaaks R, Boeing H, Foerster J, Trichopoulou A, Lagiou P, Trichopoulos D, Sacerdote C, Sieri S, Palli D, Tumino R, Panico S, Siersema PD, Peeters PH, Lund E, Barricarte A, Huerta JM, Molina-Montes E, Dorronsoro M, Quiros JR, Duell EJ, Ye W, Sund M, Lindkvist B, Johansen D, Khaw KT, Wareham N, Travis RC, Vineis P, Bueno-de-Mesquita HB, Riboli E. | Gut | 10.1136/gutjnl-2012-303006 | 2013 | ||
| Metabolism | Directed networks reveal genomic barriers and DNA repair bypasses to lateral gene transfer among prokaryotes. | Popa O, Hazkani-Covo E, Landan G, Martin W, Dagan T. | Genome Res | 10.1101/gr.115592.110 | 2011 | |
| Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms. | Nasir A, Naeem A, Khan MJ, Nicora HD, Caetano-Anolles G. | Genes (Basel) | 10.3390/genes2040869 | 2011 | ||
| Metabolism | Examination of genome homogeneity in prokaryotes using genomic signatures. | Bohlin J, Skjerve E. | PLoS One | 10.1371/journal.pone.0008113 | 2009 | |
| Metabolism | Cloning and characterization of the DNA region responsible for Megacin A-216 production in Bacillus megaterium 216. | Kiss A, Baliko G, Csorba A, Chuluunbaatar T, Medzihradszky KF, Alfoldi L. | J Bacteriol | 10.1128/jb.00557-08 | 2008 | |
| A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations. | Huang YJ, Kim E, Cox MJ, Brodie EL, Brown R, Wiener-Kronish JP, Lynch SV. | OMICS | 10.1089/omi.2009.0100 | 2010 | ||
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| Genetics | Physical and genetic map of the Finegoldia magna (formerly Peptostreptococcus magnus) ATCC 29328 genome. | Todo K, Goto T, Miyamoto K, Akimoto S | FEMS Microbiol Lett | 10.1111/j.1574-6968.2002.tb11156.x | 2002 | |
| Pathogenicity | Evaluation of broth microdilution susceptibility results for anaerobic organisms by use of a rapid direct colony inoculum. | Mangels JI, Lindberg LH | J Clin Microbiol | 10.1128/jcm.21.2.269-272.1985 | 1985 | |
| Genetics | Complete genome sequence of Finegoldia magna, an anaerobic opportunistic pathogen. | Goto T, Yamashita A, Hirakawa H, Matsutani M, Todo K, Ohshima K, Toh H, Miyamoto K, Kuhara S, Hattori M, Shimizu T, Akimoto S | DNA Res | 10.1093/dnares/dsm030 | 2008 | |
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| Genetics | Non-contiguous finished genome sequence and description of Kallipyga massiliensis gen. nov., sp. nov., a new member of the family Clostridiales Incertae Sedis XI. | Hugon P, Ramasamy D, Robert C, Couderc C, Raoult D, Fournier PE. | Stand Genomic Sci | 10.4056/sigs.4047997 | 2013 |
| #8842 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20472 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #38459 | ; Curators of the CIP; |
| #45744 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 12548 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #68380 | Automatically annotated from API rID32A . |
| #68381 | Automatically annotated from API rID32STR . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #120749 | Collection of Institut Pasteur ; Curators of the CIP; CIP 103666 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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BacDive in 2025: the core database for prokaryotic strain data