Name: Dethiosulfatibacter aminovorans C/G2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17983

Type strain:

Species: Dethiosulfatibacter aminovorans

Strain Designation: C/G2

Culture col. no.: DSM 17477, JCM 13356, NBRC 101112

Strain history: S. Takii C/G2.

NCBI tax ID(s): 1121476 (strain), 332095 (species)

SI-ID 310969

DSM 17477, JCM 13356, NBRC 101112

Section

Dethiosulfatibacter aminovorans C/G2 is an anaerobe, mesophilic, Gram-variable bacterium that was isolated from coastal marine sediment.

Gram-variable
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Tissierellales*
	Family	"Dethiosulfatibacteraceae"
	Genus	*Dethiosulfatibacter*
	Species	**Dethiosulfatibacter aminovorans**
	Full Scientific Name (LPSN)	Dethiosulfatibacter aminovorans Takii et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #32052]	Gram stain	variable
[Ref.: #69480]	Gram stain	positive Confidence in %98.897

[Ref.: #32052]	Cell length	3.5 µm

[Ref.: #32052]	Cell width	0.7 µm

[Ref.: #32052]	Cell shape	rod-shaped

[Ref.: #32052]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7012]

Culture medium

DESULFOBACTERIUM MEDIUM (DSMZ Medium 383)

[Ref.: #7012]

Culture medium growth

[Ref.: #7012]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7012]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7012]	growth	28 °C
[Ref.: #32052]	growth	15-37 °C
[Ref.: #32052]	optimum	29 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #7012]	Temperature range	mesophilic
[Ref.: #32052]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32052]			optimum	7.8
[Ref.: #32052]			growth	5.9-8.8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7012]	Oxygen tolerance	anaerobe
[Ref.: #32052]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.494

[Ref.: #32052]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %97
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.249

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32052]		NaCl		growth	0.8-5.5	%
[Ref.: #32052]		NaCl		optimum	2.0-3.0	%

[Ref.: #32052]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32052]	arginine ChEBI	+	carbon source
[Ref.: #32052]	glutamate ChEBI	+	carbon source
[Ref.: #32052]	histidine ChEBI	+	carbon source
[Ref.: #32052]	lactate ChEBI	+	carbon source
[Ref.: #32052]	pyruvate ChEBI	+	carbon source
[Ref.: #32052]	serine ChEBI	+	carbon source
[Ref.: #32052]	threonine ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #32052]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #32052]		indole ChEBI	+

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	lipoate biosynthesis	100	5 of 5
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	ribulose monophosphate pathway	100	2 of 2
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	isoleucine metabolism	100	8 of 8
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	glutamate and glutamine metabolism	96.43	27 of 28
[Ref.: #66794]	citric acid cycle	92.86	13 of 14
[Ref.: #66794]	vitamin B1 metabolism	92.31	12 of 13
[Ref.: #66794]	starch degradation	90	9 of 10
[Ref.: #66794]	propionate fermentation	90	9 of 10
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	purine metabolism	88.3	83 of 94
[Ref.: #66794]	flavin biosynthesis	86.67	13 of 15
[Ref.: #66794]	alanine metabolism	86.21	25 of 29
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	urea cycle	84.62	11 of 13
[Ref.: #66794]	vitamin B12 metabolism	82.35	28 of 34
[Ref.: #66794]	glycolysis	82.35	14 of 17
[Ref.: #66794]	pyrimidine metabolism	82.22	37 of 45
[Ref.: #66794]	metabolism of amino sugars and derivatives	80	4 of 5
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	80	4 of 5
[Ref.: #66794]	hydrogen production	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	tetrahydrofolate metabolism	78.57	11 of 14
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	NAD metabolism	77.78	14 of 18
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	histidine metabolism	75.86	22 of 29
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	toluene degradation	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	biotin biosynthesis	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	ketogluconate metabolism	75	6 of 8
[Ref.: #66794]	pentose phosphate pathway	72.73	8 of 11
[Ref.: #66794]	proline metabolism	72.73	8 of 11
[Ref.: #66794]	cysteine metabolism	72.22	13 of 18
[Ref.: #66794]	ubiquinone biosynthesis	71.43	5 of 7
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	arginine metabolism	70.83	17 of 24
[Ref.: #66794]	leucine metabolism	69.23	9 of 13
[Ref.: #66794]	degradation of sugar alcohols	68.75	11 of 16
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	methionine metabolism	65.38	17 of 26
[Ref.: #66794]	lysine metabolism	64.29	27 of 42
[Ref.: #66794]	vitamin B6 metabolism	63.64	7 of 11
[Ref.: #66794]	oxidative phosphorylation	61.54	56 of 91
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	tryptophan metabolism	60.53	23 of 38
[Ref.: #66794]	factor 420 biosynthesis	60	3 of 5
[Ref.: #66794]	bacilysin biosynthesis	60	3 of 5
[Ref.: #66794]	3-chlorocatechol degradation	60	3 of 5
[Ref.: #66794]	creatinine degradation	60	3 of 5
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	glycine betaine biosynthesis	60	3 of 5
[Ref.: #66794]	4-hydroxyphenylacetate degradation	60	6 of 10
[Ref.: #66794]	non-pathway related	57.89	22 of 38
[Ref.: #66794]	polyamine pathway	56.52	13 of 23
[Ref.: #66794]	phenol degradation	55	11 of 20
[Ref.: #66794]	lipid metabolism	54.84	17 of 31
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	Entner Doudoroff pathway	50	5 of 10
[Ref.: #66794]	sulfopterin metabolism	50	2 of 4
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	heme metabolism	50	7 of 14
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	degradation of sugar acids	48	12 of 25
[Ref.: #66794]	glutathione metabolism	42.86	6 of 14
[Ref.: #66794]	benzoyl-CoA degradation	42.86	3 of 7
[Ref.: #66794]	degradation of pentoses	42.86	12 of 28
[Ref.: #66794]	tyrosine metabolism	42.86	6 of 14
[Ref.: #66794]	vitamin K metabolism	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	3-phenylpropionate degradation	40	6 of 15
[Ref.: #66794]	ethylmalonyl-CoA pathway	40	2 of 5
[Ref.: #66794]	gallate degradation	40	2 of 5
[Ref.: #66794]	sulfate reduction	38.46	5 of 13
[Ref.: #66794]	carnitine metabolism	37.5	3 of 8
[Ref.: #66794]	dTDPLrhamnose biosynthesis	37.5	3 of 8
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	allantoin degradation	33.33	3 of 9
[Ref.: #66794]	nitrate assimilation	33.33	3 of 9
[Ref.: #66794]	degradation of hexoses	33.33	6 of 18
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	4-hydroxymandelate degradation	33.33	3 of 9
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	myo-inositol biosynthesis	30	3 of 10
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	methanogenesis from CO2	25	3 of 12
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	ascorbate metabolism	22.73	5 of 22
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7012]	Sample type/isolated from	coastal marine sediment
[Ref.: #7012]	Geographic location (country and/or sea, region)	Tokyo Bay
[Ref.: #7012]	Country	Japan
[Ref.: #7012]	Country ISO 3 Code	JPN
[Ref.: #7012]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Anoxic marine sediment from a highly eutrophic area of Tokyo Bay
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB218661 (>99% sequence identity) for Dethiosulfatibacter aminovorans subclade from Microbeatlas

Aquatic Samples	75
Soil Samples	3
Animal Samples	76
Plant Samples	11
Total Samples	165

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7012]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7012]	Dethiosulfatibacter aminovorans gene for 16S rRNA	AB218661	1479	ENA	332095 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Dethiosulfatibacter aminovorans DSM 17477	GCA_900142005	scaffold	GenBank	1121476 tax ID
[Ref.: #66792]	Dethiosulfatibacter aminovorans DSM 17477	1121476.3	wgs	PATRIC	1121476 tax ID	*
[Ref.: #66792]	Dethiosulfatibacter aminovorans DSM 17477	2585428150	draft	JGI IMG/M	1121476 tax ID	*

[Ref.: #7012]	GC-content	41.0 mol%
[Ref.: #32052]	GC-content	41 mol%
[Ref.: #67770]	GC-content	41 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Dethiosulfatibacter aminovorans DSM 17477 DSM 17477 NCBI: GCA_900142005.1
[Ref.: #69481]	spore-forming	no	97	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Dethiosulfatibacter aminovorans DSM 17477 PATRIC: 1121476.3
[Ref.: #69480]	motile	no	88.145	yes
[Ref.: #69480]	flagellated	no	94.233	yes
[Ref.: #69480]	gram-positive	yes	53.351	no
[Ref.: #69480]	anaerobic	yes	99.425	yes
[Ref.: #69480]	halophile	no	74.242	no
[Ref.: #69480]	spore-forming	no	83.037	yes
[Ref.: #69480]	thermophile	no	96.187	yes
[Ref.: #69480]	glucose-util	yes	85.178	no
[Ref.: #69480]	aerobic	no	96.662	yes
[Ref.: #69480]	glucose-ferment	yes	55.674	no

Availability in culture collections External links

[Ref.: #7012]

Culture collection no.

DSM 17477, JCM 13356, NBRC 101112

[Ref.: #86970]

SI-ID 310969

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dethiosulfatibacter aminovorans gen. nov., sp. nov., a novel thiosulfate-reducing bacterium isolated from coastal marine sediment via sulfate-reducing enrichment with Casamino acids.	Takii S, Hanada S, Tamaki H, Ueno Y, Sekiguchi Y, Ibe A, Matsuura K	Int J Syst Evol Microbiol	10.1099/ijs.0.64882-0	2007	*

References

#7012

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17477

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32052

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28302 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86970

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID310969.1 )

#28302

IJSEM 2320 2007 ( DOI 10.1099/ijs.0.64882-0 , PubMed 17911304 )

* These data were automatically processed and therefore are not curated

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Dethiosulfatibacter aminovorans DSM 17477 DSM 17477

Dethiosulfatibacter aminovorans DSM 17477

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