Name: Carboxydocella manganica DSM 23132
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17981

Type strain:

Species: Carboxydocella manganica

Culture col. no.: DSM 23132, VKM B-2609, SLM 61

Strain history: <- G. Slobodkina, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; SLM61 <- G. Slobodkina and A. Slobodkin {2009}

NCBI tax ID(s): 744873 (species)

SI-ID 400450

DSM 23132

Section

Carboxydocella manganica DSM 23132 is an anaerobe, thermophilic, Gram-positive bacterium that was isolated from sediment from a hot spring.

Gram-positive
motile
rod-shaped
anaerobe
thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	"Carboxydocellaceae"
	Genus	*Carboxydocella*
	Species	**Carboxydocella manganica**
	Full Scientific Name (LPSN)	Carboxydocella manganica Slobodkina et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #29970]	Gram stain	positive

[Ref.: #29970]	Cell length	01-06 µm

[Ref.: #29970]	Cell width	0.5-0.6 µm

[Ref.: #29970]	Cell shape	rod-shaped

[Ref.: #29970]	Motility	yes

[Ref.: #29970]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16722]

Culture medium

CARBOXYDOCELLA MANGANICA MEDIUM (DSMZ Medium 507b)

[Ref.: #16722]

Culture medium growth

[Ref.: #16722]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16722]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16722]	growth	60 °C
[Ref.: #29970]	growth	26-70 °C
[Ref.: #29970]	optimum	58-60 °C

[Ref.: #16722]	Temperature range	thermophilic
[Ref.: #29970]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #29970]			optimum	6.5
[Ref.: #29970]			growth	5.5-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16722]	Oxygen tolerance	anaerobe
[Ref.: #29970]	Oxygen tolerance	anaerobe

[Ref.: #29970]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29970]		NaCl		growth	0-2	%
[Ref.: #29970]		NaCl		optimum	0.50	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29970]	fructose ChEBI	+	carbon source
[Ref.: #29970]	glucose ChEBI	+	carbon source
[Ref.: #29970]	maltose ChEBI	+	carbon source
[Ref.: #29970]	pyruvate ChEBI	+	carbon source
[Ref.: #29970]	sucrose ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16722]	Sample type/isolated from	sediment from a hot spring
[Ref.: #16722]	Geographic location (country and/or sea, region)	Kamchatka, Uzon Caldera, 'Trostnikovyi' field
[Ref.: #16722]	Country	Russia
[Ref.: #16722]	Country ISO 3 Code	RUS
[Ref.: #16722]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GU584133 (>99% sequence identity) for Carboxydocella manganica subclade from Microbeatlas

Aquatic Samples	10
Soil Samples
Animal Samples
Plant Samples
Total Samples	10

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16722]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16722]	Carboxydocella manganica strain SLM61 16S ribosomal RNA gene, partial sequence	GU584133	1522	ENA	744873 tax ID

[Ref.: #16722]	GC-content	50.9 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #29970]	GC-content	50.9 mol%

Availability in culture collections External links

[Ref.: #16722]

Culture collection no.

DSM 23132, VKM B-2609, SLM 61

[Ref.: #86968]

SI-ID 400450

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Carboxydocella manganica sp. nov., a thermophilic, dissimilatory Mn(IV)- and Fe(III)-reducing bacterium from a Kamchatka hot spring.	Slobodkina GB, Panteleeva AN, Sokolova TG, Bonch-Osmolovskaya EA, Slobodkin AI	Int J Syst Evol Microbiol	10.1099/ijs.0.027623-0	2011	*

References

#16722

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23132

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29970

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26339 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86968

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400450.1 )

#26339

IJSEM 890 2012 ( DOI 10.1099/ijs.0.027623-0 , PubMed 21642487 )

* These data were automatically processed and therefore are not curated

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