Anaerococcus octavius (DSM 11663, KCTC 5964, NCTC 9810)

Name: Anaerococcus octavius (DSM 11663, KCTC 5964, NCTC 9810)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17975

Type strain

Strain Designation Davey 1(Hare group VIII)

Culture col. no. DSM 11663 KCTC 5964 NCTC 9810 Davey 1(Hare group VIII)

NCBI tax ID(s) 1161098 54007

Special Collections DSMZ KCTC

History <- NCTC <- R. Hare, strain Davey 1 (Hare group VIII) <- DSM <- NCTC <- R Hare, strain Davey 1(Hare group VIII)

Links

Anaerococcus octavius Davey 1 is an anaerobe, coccus-shaped bacterium that was isolated from normal nose.

coccus-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 49148

KCTC 5964,DSM 11663,NCTC 9810

@ref 20215

Last LPSN update 2026-02-09 11:22:21

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Tissierellales

Family Peptoniphilaceae

Genus Anaerococcus

Species Anaerococcus octavius

Full scientific name Anaerococcus octavius (Murdoch et al. 1997) Ezaki et al. 2001

Synonyms (1)

Peptostreptococcus octavius

BacDive ID	Other strains from **Anaerococcus octavius** (3)	Type strain
17974	A. octavius SBH 405, DSM 10024, CIP 105327, CCUG 38493
148607	A. octavius CCUG 35703
150755	A. octavius CCUG 42198 A

Morphology

Cell morphology

@ref	Cell shape	Gram stain
67771	coccus-shaped
67771		positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
4432	PYG MEDIUM (MODIFIED) (DSMZ Medium 104)		Medium recipe at MediaDive	Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
4432	positive	growth	37
67771	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
4432	anaerobe
67771	anaerobe
125439	obligate anaerobe	92.3

Murein

@ref	Murein short key	Type
4432	A12.03	A4alpha' L-Lys-Gly-D-Asp

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	coenzyme A metabolism	100	4 of 4
66794	ribulose monophosphate pathway	100	2 of 2
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	gluconeogenesis	100	8 of 8
66794	adipate degradation	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	vitamin B1 metabolism	100	13 of 13
66794	folate polyglutamylation	100	1 of 1
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	starch degradation	90	9 of 10
66794	propanol degradation	85.71	6 of 7
66794	selenocysteine biosynthesis	83.33	5 of 6
66794	palmitate biosynthesis	81.82	18 of 22
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glycogen metabolism	80	4 of 5
66794	photosynthesis	78.57	11 of 14
66794	acetate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	glycolysis	70.59	12 of 17
66794	pyrimidine metabolism	68.89	31 of 45
66794	purine metabolism	67.02	63 of 94
66794	enterobactin biosynthesis	66.67	2 of 3
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	formaldehyde oxidation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	alanine metabolism	62.07	18 of 29
66794	cysteine metabolism	61.11	11 of 18
66794	NAD metabolism	61.11	11 of 18
66794	methylglyoxal degradation	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	hydrogen production	60	3 of 5
66794	oxidative phosphorylation	59.34	54 of 91
66794	reductive acetyl coenzyme A pathway	57.14	4 of 7
66794	CO2 fixation in Crenarchaeota	55.56	5 of 9
66794	serine metabolism	55.56	5 of 9
66794	d-mannose degradation	55.56	5 of 9
66794	pentose phosphate pathway	54.55	6 of 11
66794	vitamin B6 metabolism	54.55	6 of 11
66794	phenylalanine metabolism	53.85	7 of 13
66794	methionine metabolism	53.85	14 of 26
66794	butanoate fermentation	50	2 of 4
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	threonine metabolism	50	5 of 10
66794	ketogluconate metabolism	50	4 of 8
66794	sulfopterin metabolism	50	2 of 4
66794	suberin monomers biosynthesis	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	ethanol fermentation	50	1 of 2
66794	glutamate and glutamine metabolism	46.43	13 of 28
66794	urea cycle	46.15	6 of 13
66794	proline metabolism	45.45	5 of 11
66794	lipid metabolism	45.16	14 of 31
66794	non-pathway related	44.74	17 of 38
66794	degradation of sugar alcohols	43.75	7 of 16
66794	citric acid cycle	42.86	6 of 14
66794	degradation of pentoses	42.86	12 of 28
66794	tyrosine metabolism	42.86	6 of 14
66794	glycine metabolism	40	4 of 10
66794	cellulose degradation	40	2 of 5
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	isoprenoid biosynthesis	38.46	10 of 26
66794	leucine metabolism	38.46	5 of 13
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	37.5	3 of 8
66794	tryptophan metabolism	36.84	14 of 38
66794	metabolism of disaccharids	36.36	4 of 11
66794	tetrahydrofolate metabolism	35.71	5 of 14
66794	glutathione metabolism	35.71	5 of 14
66794	sphingosine metabolism	33.33	2 of 6
66794	nitrate assimilation	33.33	3 of 9
66794	IAA biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	degradation of hexoses	33.33	6 of 18
66794	cyanate degradation	33.33	1 of 3
66794	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
66794	molybdenum cofactor biosynthesis	33.33	3 of 9
66794	sulfate reduction	30.77	4 of 13
66794	Entner Doudoroff pathway	30	3 of 10
66794	arginine metabolism	29.17	7 of 24
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	lysine metabolism	28.57	12 of 42
66794	ascorbate metabolism	27.27	6 of 22
66794	d-xylose degradation	27.27	3 of 11
66794	3-phenylpropionate degradation	26.67	4 of 15
66794	polyamine pathway	26.09	6 of 23
66794	biotin biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	isoleucine metabolism	25	2 of 8
66794	ppGpp biosynthesis	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	histidine metabolism	24.14	7 of 29
66794	valine metabolism	22.22	2 of 9
66794	lipid A biosynthesis	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Organ	#Nose

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
4432	normal nose	London	United Kingdom	GBR	Europe
67771	From normal nose	London	United Kingdom	GBR	Europe

Taxonmaps

69479

Global distribution of 16S sequence NR_026360 (>99% sequence identity) for Anaerococcus octavius subclade from Microbeatlas

Aquatic Samples	276
Soil Samples	68
Animal Samples	11636
Plant Samples	91
Total Samples	12071

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
4432	yes, in single cases	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Anaerococcus octavius NCTC 9810	complete			2512047049	1161098	89.49
66792	51765_E01 assembly for Anaerococcus octavius NCTC9810	contig	GCA_900445265	54007.13	2808606682	54007	75.55

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
4432	P.octavius 16S rRNA gene	Y07841	1407		1161098
67771	Anaerococcus octavius NCTC 9810 16S ribosomal RNA, partial sequence	NR_026360	1407		1161098

GC content

@ref	GC-content (mol%)	Method
4432	28	thermal denaturation, midpoint method (Tm)
67771	28.0	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Anaerococcus octavius NCTC9810
NCBI: GCA_900445265

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	84.00	no
125439	motility	BacteriaNetⓘ	no	58.60	no
125439	gram_stain	BacteriaNetⓘ	positive	70.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	92.30	no

Literature

References

#4432	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11663
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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