Name: Anaerococcus hydrogenalis DSM 7454
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17970

Type strain:

Species: Anaerococcus hydrogenalis

Culture col. no.: DSM 7454, ATCC 49630, JCM 7635, GIFU 7662, CIP 107325

Strain history: CIP <- 2001, JCM <- T. Ezaki, GIFU: strain 7662

NCBI tax ID(s): 561177 (strain), 33029 (species)

SI-ID 42590

ATCC 49630, JCM 7635, DSM 7454, CIP 107325

Other strains from Anaerococcus hydrogenalis

A. hydrogenalis CCUG 59477
A. hydrogenalis CCUG 64250

Section

Anaerococcus hydrogenalis DSM 7454 is an anaerobe, mesophilic, Gram-positive human pathogen that was isolated from human faeces.

coccus-shaped
Gram-positive
anaerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Peptoniphilaceae*
	Genus	*Anaerococcus*
	Species	**Anaerococcus hydrogenalis**
	Full Scientific Name (LPSN)	Anaerococcus hydrogenalis (Ezaki et al. 1990) Ezaki et al. 2001

Synonym

Peptostreptococcus hydrogenalis

Information on morphological and physiological properties Morphology

[Ref.: #120001]	Gram stain	positive

[Ref.: #120001]	Cell shape	coccus-shaped

[Ref.: #120001]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3159]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #3159]

Culture medium growth

[Ref.: #3159]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3159]

Culture medium composition

expand / minimize

[Ref.: #33768]

Culture medium

MEDIUM 137 - for Ruminococcus hansenii and Rarobacter incanus

[Ref.: #33768]

Culture medium growth

[Ref.: #33768]

Culture medium composition

expand / minimize

[Ref.: #120001]

Culture medium

CIP Medium 137

[Ref.: #120001]

Culture medium growth

[Ref.: #120001]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #3159]	growth	37 °C
[Ref.: #33768]	growth	37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #120001]	growth	37 °C

[Ref.: #3159]	Temperature range	mesophilic
[Ref.: #33768]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #120001]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3159]

Oxygen tolerance

anaerobe

[Ref.: #3159]	Murein short key	A11.33
[Ref.: #3159]	Murein types	A4alpha L-Lys-D-Glu

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	+	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	+	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	yes	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	+	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	+	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #3159]	12575	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3159]	Sample type/isolated from	human faeces

[Ref.: #67770]	Sample type/isolated from	Human feces

[Ref.: #120001]	Sample type/isolated from	Human, Faeces
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB538433 (>99% sequence identity) for Anaerococcus hydrogenalis from Microbeatlas

Aquatic Samples	200
Soil Samples	197
Animal Samples	19413
Plant Samples	75
Total Samples	19885

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3159]	Pathogenicity (human)	yes, in single cases
[Ref.: #3159]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120001]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Anaerococcus hydrogenalis gene for 16S ribosomal RNA, partial sequence, isolate: GIFU 7662	D14140	1375	ENA	561177 tax ID	*
[Ref.: #20218]	Anaerococcus hydrogenalis gene for 16S ribosomal RNA, partial sequence, strain: JCM 7635	AB538433	1488	ENA	33029 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Anaerococcus hydrogenalis DSM 7454	GCA_000173355	contig	GenBank	561177 tax ID
[Ref.: #66792]	Anaerococcus hydrogenalis DSM 7454	561177.4	wgs	PATRIC	561177 tax ID	*
[Ref.: #66792]	Anaerococcus hydrogenalis DSM 7454	642979323	draft	JGI IMG/M	561177 tax ID	*

[Ref.: #3159]	GC-content	31.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	31 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Anaerococcus hydrogenalis DSM 7454 PATRIC: 561177.4
[Ref.: #69480]	gram-positive	yes	92.157	no
[Ref.: #69480]	anaerobic	yes	99.435	yes
[Ref.: #69480]	halophile	yes	57.428	no
[Ref.: #69480]	spore-forming	no	88.037	no
[Ref.: #69480]	glucose-util	yes	86.888	no
[Ref.: #69480]	thermophile	no	99.015	yes
[Ref.: #69480]	aerobic	no	98.949	yes
[Ref.: #69480]	motile	no	93.371	no
[Ref.: #69480]	flagellated	no	94.818	no
[Ref.: #69480]	glucose-ferment	yes	71.257	no

Availability in culture collections External links

[Ref.: #3159]

Culture collection no.

DSM 7454, ATCC 49630, JCM 7635, GIFU 7662, CIP 107325

[Ref.: #86957]

SI-ID 42590

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Peptostreptococcus hydrogenalis sp. nov. from human fecal and vaginal flora.	Ezaki T, Liu SL, Hashimoto Y, Yabuuchi E	Int J Syst Bacteriol	10.1099/00207713-40-3-305	1990	*

References

#3159

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7454

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#33768 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#86957

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42590.1 )

#120001 Collection of Institut Pasteur ; Curators of the CIP; CIP 107325
* These data were automatically processed and therefore are not curated

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