Anaerobranca californiensis (DSM 14826, UNIQEM 227, PAOHA-1)

Name: Anaerobranca californiensis (DSM 14826, UNIQEM 227, PAOHA-1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17964

Type strain

Strain Designation PAOHA-1

Culture col. no. DSM 14826 UNIQEM 227 PAOHA-1

NCBI tax ID(s) 1120989 182411

Special Collections DSMZ Literature strains

History <- V. Gorlenko, Russian Academy of Sciences, Inst. of Microbiology, Moscow, Russia; PAOHA-1 <- V. Gorlenko {2000}

Links

Anaerobranca californiensis PAOHA-1 is an anaerobe, thermophilic, Gram-negative prokaryote that was isolated from alkaline hot spring.

Gram-negative motile rod-shaped anaerobe thermophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 132010

DSM 14826

@ref 20215

Last LPSN update 2026-02-09 11:22:21

Domain Bacteria

Phylum Bacillota

Class Syntrophomonadia

Order Syntrophomonadales

Family Syntrophomonadaceae

Genus Anaerobranca

Species Anaerobranca californiensis

Full scientific name Anaerobranca californiensis Gorlenko et al. 2004

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
30141	negative	3.7 µm	0.285 µm	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
5563	ANAEROBRANCA GOTTSCHALKII MEDIUM (DSMZ Medium 895)		Medium recipe at MediaDive	Name: ANAEROBRANCA GOTTSCHALKII MEDIUM (DSMZ Medium 895; with strain-specific modifications) Composition: Na2S2O3 x 5 H2O 3.94867 g/l Na2CO3 2.9615 g/l Tryptone 1.97433 g/l (NH4)2SO4 0.987167 g/l L-Cysteine HCl x H2O 0.493583 g/l K2HPO4 0.493583 g/l NH4Cl 0.394867 g/l Yeast extract 0.246792 g/l MgSO4 x 7 H2O 0.029615 g/l Nitrilotriacetic acid 0.0148075 g/l NaCl 0.00987167 g/l MnSO4 x H2O 0.00493583 g/l CoSO4 x 7 H2O 0.0017769 g/l ZnSO4 x 7 H2O 0.0017769 g/l CaCl2 x 2 H2O 0.000987167 g/l FeSO4 x 7 H2O 0.000987167 g/l Sodium resazurin 0.000493583 g/l NiCl2 x 6 H2O 0.00029615 g/l AlK(SO4)2 x 12 H2O 0.000197433 g/l CuSO4 x 5 H2O 9.87167e-05 g/l H3BO3 9.87167e-05 g/l Pyridoxine hydrochloride 9.87167e-05 g/l Na2MoO4 x 2 H2O 9.87167e-05 g/l p-Aminobenzoic acid 4.93583e-05 g/l (DL)-alpha-Lipoic acid 4.93583e-05 g/l Calcium D-(+)-pantothenate 4.93583e-05 g/l Nicotinic acid 4.93583e-05 g/l Riboflavin 4.93583e-05 g/l Thiamine HCl 4.93583e-05 g/l Folic acid 1.97433e-05 g/l Biotin 1.97433e-05 g/l Na2WO4 x 2 H2O 3.94867e-06 g/l Na2SeO3 x 5 H2O 2.9615e-06 g/l Vitamin B12 9.87167e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5563	positive	growth	60	thermophilic
30141	positive	growth	45-70	thermophilic
30141	positive	optimum	58	thermophilic

Culture pH

@ref	Ability	Type	PH	PH range
30141	positive	optimum	9.25
30141	positive	growth	8.6-10.4	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
5563	anaerobe
30141	anaerobe
125439	anaerobe	99.7

Spore formation

30141

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30141	NaCl	positive	growth	0-6 %
30141	NaCl	positive	optimum	1.75 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30141	17057 ChEBI	cellobiose	+	carbon source
30141	28757 ChEBI	fructose	+	carbon source
30141	17754 ChEBI	glycerol	+	carbon source
30141	17306 ChEBI	maltose	+	carbon source
30141	15361 ChEBI	pyruvate	+	carbon source
30141	17992 ChEBI	sucrose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
30141	16136 ChEBI	hydrogen sulfide

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	starch degradation	100	10 of 10
66794	coenzyme A metabolism	100	4 of 4
66794	teichoic acid biosynthesis	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	adipate degradation	100	2 of 2
66794	palmitate biosynthesis	95.45	21 of 22
66794	chorismate metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	vitamin B1 metabolism	84.62	11 of 13
66794	hydrogen production	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	cellulose degradation	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	pyrimidine metabolism	80	36 of 45
66794	photosynthesis	78.57	11 of 14
66794	serine metabolism	77.78	7 of 9
66794	urea cycle	76.92	10 of 13
66794	purine metabolism	76.6	72 of 94
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	ppGpp biosynthesis	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	glycolysis	70.59	12 of 17
66794	glutamate and glutamine metabolism	67.86	19 of 28
66794	formaldehyde oxidation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	acetoin degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	molybdenum cofactor biosynthesis	66.67	6 of 9
66794	NAD metabolism	66.67	12 of 18
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	gluconeogenesis	62.5	5 of 8
66794	alanine metabolism	62.07	18 of 29
66794	methionine metabolism	61.54	16 of 26
66794	methylglyoxal degradation	60	3 of 5
66794	threonine metabolism	60	6 of 10
66794	factor 420 biosynthesis	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	glycine betaine biosynthesis	60	3 of 5
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	propanol degradation	57.14	4 of 7
66794	CO2 fixation in Crenarchaeota	55.56	5 of 9
66794	d-mannose degradation	55.56	5 of 9
66794	non-pathway related	55.26	21 of 38
66794	lipid metabolism	51.61	16 of 31
66794	oxidative phosphorylation	50.55	46 of 91
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	CMP-KDO biosynthesis	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	50	4 of 8
66794	cysteine metabolism	50	9 of 18
66794	biotin biosynthesis	50	2 of 4
66794	suberin monomers biosynthesis	50	1 of 2
66794	lactate fermentation	50	2 of 4
66794	sulfopterin metabolism	50	2 of 4
66794	glycine metabolism	50	5 of 10
66794	phenylalanine metabolism	46.15	6 of 13
66794	lysine metabolism	45.24	19 of 42
66794	nitrate assimilation	44.44	4 of 9
66794	glutathione metabolism	42.86	6 of 14
66794	cardiolipin biosynthesis	42.86	3 of 7
66794	arginine metabolism	41.67	10 of 24
66794	histidine metabolism	41.38	12 of 29
66794	phenylacetate degradation (aerobic)	40	2 of 5
66794	Entner Doudoroff pathway	40	4 of 10
66794	myo-inositol biosynthesis	40	4 of 10
66794	coenzyme M biosynthesis	40	4 of 10
66794	3-chlorocatechol degradation	40	2 of 5
66794	polyamine pathway	39.13	9 of 23
66794	sulfate reduction	38.46	5 of 13
66794	isoleucine metabolism	37.5	3 of 8
66794	tryptophan metabolism	36.84	14 of 38
66794	pentose phosphate pathway	36.36	4 of 11
66794	metabolism of disaccharids	36.36	4 of 11
66794	citric acid cycle	35.71	5 of 14
66794	tetrahydrofolate metabolism	35.71	5 of 14
66794	IAA biosynthesis	33.33	1 of 3
66794	L-lactaldehyde degradation	33.33	1 of 3
66794	valine metabolism	33.33	3 of 9
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	degradation of hexoses	33.33	6 of 18
66794	pantothenate biosynthesis	33.33	2 of 6
66794	1,4-dihydroxy-6-naphthoate biosynthesis	33.33	2 of 6
66794	leucine metabolism	30.77	4 of 13
66794	propionate fermentation	30	3 of 10
66794	tyrosine metabolism	28.57	4 of 14
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	degradation of sugar acids	28	7 of 25
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	vitamin B6 metabolism	27.27	3 of 11
66794	proline metabolism	27.27	3 of 11
66794	cyclohexanol degradation	25	1 of 4
66794	vitamin E metabolism	25	1 of 4
66794	vitamin B12 metabolism	23.53	8 of 34
66794	allantoin degradation	22.22	2 of 9
66794	lipid A biosynthesis	22.22	2 of 9
66794	heme metabolism	21.43	3 of 14

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-
#Condition	#Alkaline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
5563	alkaline hot spring	California, Mono lake, Paoha island	USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence AY064217 (>99% sequence identity) for Anaerobranca from Microbeatlas

Aquatic Samples
Soil Samples	1
Animal Samples	3
Plant Samples
Total Samples	4

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5563	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2585428191 annotated assembly for Anaerobranca californiensis DSM 14826	contig	GCA_900142275	1120989.3	2585428191	1120989	65.9

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5563	Anaerobranca californiensis strain PAOHA-1 16S ribosomal RNA gene, partial sequence	AY064217	1489		182411

GC content

@ref	GC-content (mol%)
5563	30.3
30141	30

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Anaerobranca californiensis DSM 14826
NCBI: GCA_900142275

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.70	no
125439	gram_stain	BacteriaNetⓘ	variable	82.20	no
125439	motility	BacteriaNetⓘ	yes	81.50	no
125439	spore_formation	BacteriaNetⓘ	yes	81.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Anaerobranca californiensis DSM 14826
PATRIC: 1120989.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	50.41	yes
125438	anaerobic	anaerobicⓘ	yes	81.92	yes
125438	spore-forming	spore-formingⓘ	yes	60.13	no
125438	aerobic	aerobicⓘ	no	92.90	no
125438	thermophilic	thermophileⓘ	yes	65.67	yes
125438	flagellated	motile2+ⓘ	yes	69.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Antibacterial Siderophores of Pandoraea Pathogens and Their Impact on the Diseased Lung Microbiota.	Herzog E, Ishida K, Scherlach K, Chen X, Bartels B, Niehs SP, Cheaib B, Panagiotou G, Hertweck C.	Angew Chem Int Ed Engl	10.1002/anie.202505714	2025
Genetics	Complete genome sequence of Pandoraea oxalativorans DSM 23570(T), an oxalate metabolizing soil bacterium.	Chan KG, Yong D, Ee R, Lim YL, Yu CY, Tee KK, Yin WF, Ang GY.	J Biotechnol	10.1016/j.jbiotec.2015.12.037	2016
	The phytopathogen Xanthomonas campestris senses and effluxes salicylic acid via a sensor HepR and an RND family efflux pump to promote virulence in host plants.	Song K, Li R, Cui Y, Chen B, Zhou L, Han W, Jiang BL, He YW.	mLife	10.1002/mlf2.12140	2024
Genetics	Comparative genomic study of three species within the genus Ornithinibacillus, reflecting the adaption to different habitats.	Jiang XW, Cheng H, Zheng BW, Li A, Lv LX, Ling ZX, Yan R, Jiang HY, Cheng YW, Gu SL, Li LJ.	Gene	10.1016/j.gene.2015.12.025	2016
	Small molecule produced by Photorhabdus interferes with ubiquinone biosynthesis in Gram-negative bacteria.	Bargabos R, Iinishi A, Hawkins B, Privalsky T, Pitt N, Son S, Corsetti R, Gates MF, Miller RD, Lewis K.	mBio	10.1128/mbio.01167-24	2024
	The Small RNA NcS25 Regulates Biological Amine-Transporting Outer Membrane Porin BCAL3473 in Burkholderia cenocepacia.	Sass AM, Coenye T.	mSphere	10.1128/msphere.00083-23	2023
	Soil substrate culturing approaches recover diverse members of Actinomycetota from desert soils of Herring Island, East Antarctica.	Benaud N, Chelliah DS, Wong SY, Ferrari BC.	Extremophiles	10.1007/s00792-022-01271-2	2022
Metabolism	Extracellular electron transport-mediated Fe(III) reduction by a community of alkaliphilic bacteria that use flavins as electron shuttles.	Fuller SJ, McMillan DG, Renz MB, Schmidt M, Burke IT, Stewart DI.	Appl Environ Microbiol	10.1128/aem.02282-13	2014
Enzymology	Microbial diversity in water and sediment of Lake Chaka, an athalassohaline lake in northwestern China.	Jiang H, Dong H, Zhang G, Yu B, Chapman LR, Fields MW.	Appl Environ Microbiol	10.1128/aem.02869-05	2006
Metabolism	Coupled arsenotrophy in a hot spring photosynthetic biofilm at Mono Lake, California.	Hoeft SE, Kulp TR, Han S, Lanoil B, Oremland RS.	Appl Environ Microbiol	10.1128/aem.00545-10	2010
Phylogeny	Simplicispira suum sp. nov., isolated from a dust collector at a pig farm.	Cho HY, Heo J, Hong SB, Kim JS, Kwon SW, Kim SJ.	Int J Syst Evol Microbiol	10.1099/ijsem.0.002874	2018
Phylogeny	Pannonibacter carbonis sp. nov., isolated from coal mine water.	Xi L, Qiao N, Liu D, Li J, Zhang J, Liu J.	Int J Syst Evol Microbiol	10.1099/ijsem.0.002794	2018
Phylogeny	Streptomyces amritsarensis sp. nov., exhibiting broad-spectrum antimicrobial activity.	Sharma D, Mayilraj S, Manhas RK.	Antonie Van Leeuwenhoek	10.1007/s10482-014-0151-2	2014
Phylogeny	Ornithinibacillus contaminans sp. nov., an endospore-forming species.	Kampfer P, Falsen E, Lodders N, Langer S, Busse HJ, Schumann P.	Int J Syst Evol Microbiol	10.1099/ijs.0.021337-0	2010
Phylogeny	Anaerobranca californiensis sp. nov., an anaerobic, alkalithermophilic, fermentative bacterium isolated from a hot spring on Mono Lake.	Gorlenko V, Tsapin A, Namsaraev Z, Teal T, Tourova T, Engler D, Mielke R, Nealson K	Int J Syst Evol Microbiol	10.1099/ijs.0.02909-0	2004

References

#5563	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14826
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26492	IJSEM 739 2004 ( DOI 10.1099/ijs.0.0299-0 )
#30141	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26492
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Anaerobranca californiensis (DSM 14826, UNIQEM 227, PAOHA-1)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900142275

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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