Thiomonas delicata (DSM 17897, IAM 12624, IFO 14566)

Name: Thiomonas delicata (DSM 17897, IAM 12624, IFO 14566)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17948

Type strain

Strain Designation TuT-1

Culture col. no. DSM 17897 IAM 12624 IFO 14566 KCTC 2851 NBRC 14566 2 more

NCBI tax ID(s) 364030

Special Collections DSMZ KCTC

History <- NBRC; NBRC 14566 <- Institute For Fermentation, Osaka, Japan (IFO); see NBRC; <- IAM; IAM 12624 <- Y. Katayama-Fujimura and H. Kuraishi, Tokyo University of Agriculture and Technology, Tokyo, Japan; THI 091 <- T Mizoguchi; TuT-1

Links

Thiomonas delicata TuT-1 is a bacterium that was isolated from mine water.

16S sequence Bacteria

Name and taxonomic classification

SI-ID 5029

LMG 7200,IAM 12624,LMG 8696,IFO 14566,KCTC 2851,NBRC 14566,DSM 17897,BCRC 17549,CCRC 17549

@ref 20215

Last LPSN update 2026-02-09 11:22:21

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Comamonadaceae

Genus Thiomonas

Species Thiomonas delicata

Full scientific name Thiomonas delicata (Katayama-Fujimura et al. 1984 ex Mizoguchi et al. 1976) Kelly and Wood 2006

Synonyms (3)

Thiomonas cuprina
Thiobacillus delicatus
"Thiobacillus cuprinus"

BacDive ID	Other strains from **Thiomonas delicata** (2)	Type strain
17947	T. delicata b6, DSM 16361, LMG 22795 (type strain)
17946	T. delicata Hö5, DSM 5495, NBRC 102094, NBRC 102145

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7231	THIOMONAS DELICATA MEDIUM (DSMZ Medium 1037)		Medium recipe at MediaDive	Name: THIOMONAS DELICATA MEDIUM (DSMZ Medium 1037) Composition: Agar 15.0 g/l Na2S2O3 x 5 H2O 5.0 g/l Na2HPO4 4.5 g/l KH2PO4 1.5 g/l Na-aspartate 1.0 g/l Yeast extract 1.0 g/l NH4Cl 0.3 g/l MgSO4 x 7 H2O 0.1 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
7231	positive	growth	30

Physiology and metabolism

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	ppGpp biosynthesis	100	4 of 4
66794	photosynthesis	100	14 of 14
66794	denitrification	100	2 of 2
66794	hydrogen production	100	5 of 5
66794	ethanol fermentation	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	sulfopterin metabolism	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	biotin biosynthesis	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	palmitate biosynthesis	100	22 of 22
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	methylglyoxal degradation	100	5 of 5
66794	ubiquinone biosynthesis	100	7 of 7
66794	cyanate degradation	100	3 of 3
66794	phenylalanine metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	chorismate metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	NAD metabolism	83.33	15 of 18
66794	purine metabolism	82.98	78 of 94
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	gallate degradation	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	heme metabolism	78.57	11 of 14
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	lipid A biosynthesis	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	leucine metabolism	76.92	10 of 13
66794	sulfate reduction	76.92	10 of 13
66794	isoleucine metabolism	75	6 of 8
66794	degradation of sugar alcohols	75	12 of 16
66794	acetate fermentation	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	glutamate and glutamine metabolism	75	21 of 28
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	gluconeogenesis	75	6 of 8
66794	butanoate fermentation	75	3 of 4
66794	3-phenylpropionate degradation	73.33	11 of 15
66794	proline metabolism	72.73	8 of 11
66794	propanol degradation	71.43	5 of 7
66794	glutathione metabolism	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	phenol degradation	70	14 of 20
66794	propionate fermentation	70	7 of 10
66794	methionine metabolism	69.23	18 of 26
66794	urea cycle	69.23	9 of 13
66794	vitamin B1 metabolism	69.23	9 of 13
66794	tryptophan metabolism	68.42	26 of 38
66794	oxidative phosphorylation	68.13	62 of 91
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	nitrate assimilation	66.67	6 of 9
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	alanine metabolism	65.52	19 of 29
66794	glycolysis	64.71	11 of 17
66794	pyrimidine metabolism	64.44	29 of 45
66794	citric acid cycle	64.29	9 of 14
66794	tyrosine metabolism	64.29	9 of 14
66794	vitamin B6 metabolism	63.64	7 of 11
66794	non-pathway related	63.16	24 of 38
66794	flavin biosynthesis	60	9 of 15
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	lipid metabolism	58.06	18 of 31
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	androgen and estrogen metabolism	56.25	9 of 16
66794	histidine metabolism	55.17	16 of 29
66794	arginine metabolism	54.17	13 of 24
66794	lysine metabolism	52.38	22 of 42
66794	glycine metabolism	50	5 of 10
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	alginate biosynthesis	50	2 of 4
66794	Entner Doudoroff pathway	50	5 of 10
66794	pantothenate biosynthesis	50	3 of 6
66794	selenocysteine biosynthesis	50	3 of 6
66794	phenylmercury acetate degradation	50	1 of 2
66794	cysteine metabolism	50	9 of 18
66794	coenzyme M biosynthesis	50	5 of 10
66794	ketogluconate metabolism	50	4 of 8
66794	ribulose monophosphate pathway	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	phenylpropanoid biosynthesis	46.15	6 of 13
66794	metabolism of disaccharids	45.45	5 of 11
66794	allantoin degradation	44.44	4 of 9
66794	polyamine pathway	43.48	10 of 23
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	vitamin K metabolism	40	2 of 5
66794	glycine betaine biosynthesis	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	O-antigen biosynthesis	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	degradation of pentoses	39.29	11 of 28
66794	carnitine metabolism	37.5	3 of 8
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	enterobactin biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	ascorbate metabolism	31.82	7 of 22
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	bile acid biosynthesis, neutral pathway	29.41	5 of 17
66794	degradation of sugar acids	28	7 of 25
66794	arachidonic acid metabolism	27.78	5 of 18
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	d-xylose degradation	27.27	3 of 11
66794	vitamin E metabolism	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	glycogen biosynthesis	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	4-hydroxymandelate degradation	22.22	2 of 9
66794	degradation of hexoses	22.22	4 of 18

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Other	#Mine
#Environmental	#Aquatic	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7231	mine water	Akita, Kosaka Mine	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB245481 (>99% sequence identity) for Thiomonas delicata subclade from Microbeatlas

Aquatic Samples	558
Soil Samples	383
Animal Samples	148
Plant Samples	7
Total Samples	1096

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7231	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Thiobacillus delicatus gene for 16S rRNA, partial sequence	AB245481	1456		364030

GC content

@ref	GC-content (mol%)	Method
7231	66.5	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proposal that the arsenite-oxidizing organisms Thiomonas cuprina and 'Thiomonas arsenivorans' be reclassified as strains of Thiomonas delicata, and emended description of Thiomonas delicata.	Battaglia-Brunet F, El Achbouni H, Quemeneur M, Hallberg KB, Kelly DP, Joulian C	Int J Syst Evol Microbiol	10.1099/ijs.0.023408-0	2011
Phylogeny	Confirmation of Thiomonas delicata (formerly Thiobacillus delicatus) as a distinct species of the genus Thiomonas Moreira and Amils 1997 with comments on some species currently assigned to the genus.	Katayama Y, Uchino Y, Wood AP, Kelly DP	Int J Syst Evol Microbiol	10.1099/ijs.0.64299-0	2006

References

#7231	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17897
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Thiomonas delicata (DSM 17897, IAM 12624, IFO 14566)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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