Name: Nitrobacter hamburgensis X14
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1794

Type strain:

Species: Nitrobacter hamburgensis

Strain Designation: X14

Culture col. no.: DSM 10229

Strain history: <- E. Spieck <- E. Bock; X14

NCBI tax ID(s): 912 (species)

SI-ID 48782

DSM 10229, LMG 19028, NCIMB 13809

Section

Nitrobacter hamburgensis X14 is a mesophilic bacterium of the family Nitrobacteraceae.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Nitrobacteraceae*
	Genus	*Nitrobacter*
	Species	**Nitrobacter hamburgensis**
	Full Scientific Name (LPSN)	Nitrobacter hamburgensis Bock et al. 2001

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3854]

Culture medium

AUTOTROPHIC NITROBACTER MEDIUM (DSMZ Medium 756c)

[Ref.: #3854]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #3854]

Culture medium composition

expand / minimize

[Ref.: #3854]

Culture medium

10% MIXOTROPHIC NITROBACTER MEDIUM (DSMZ Medium 756b)

[Ref.: #3854]

Culture medium growth

[Ref.: #3854]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3854]

Culture medium composition

expand / minimize

[Ref.: #3854]

Culture medium

MIXOTROPHIC NITROBACTER MEDIUM (DSMZ Medium 756a)

[Ref.: #3854]

Culture medium growth

[Ref.: #3854]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3854]

Culture medium composition

expand / minimize

[Ref.: #3854]

Culture medium

HETEROTROPHIC NITROBACTER MEDIUM (DSMZ Medium 756)

[Ref.: #3854]

Culture medium growth

[Ref.: #3854]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3854]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3854]			growth	28 °C

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Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence L11663 (>99% sequence identity) for Nitrobacter from Microbeatlas

Aquatic Samples	159
Soil Samples	652
Animal Samples	42
Plant Samples	67
Total Samples	920

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3854]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3854]	Nitrobacter hamburgensis 16S ribosomal RNA (16S rRNA) gene	L11663	1462	ENA	323097 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Nitrobacter hamburgensis X14	GCA_000013885	complete	GenBank	323097 tax ID	*
[Ref.: #66792]	Nitrobacter hamburgensis X14	323097.20	plasmid	PATRIC	323097 tax ID	*
[Ref.: #66792]	Nitrobacter hamburgensis X14	323097.21	plasmid	PATRIC	323097 tax ID	*
[Ref.: #66792]	Nitrobacter hamburgensis X14	323097.22	plasmid	PATRIC	323097 tax ID	*
[Ref.: #66792]	Nitrobacter hamburgensis X14	323097.6	complete	PATRIC	323097 tax ID	*
[Ref.: #66792]	Nitrobacter hamburgensis X14	637000192	complete	JGI IMG/M	323097 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nitrobacter hamburgensis X14 X14 NCBI: GCA_000013885.1
[Ref.: #69480]	motile	yes	70.394	no
[Ref.: #69480]	flagellated	no	85.051	no
[Ref.: #69480]	gram-positive	no	98.259	no
[Ref.: #69480]	anaerobic	no	94.576	no
[Ref.: #69480]	halophile	no	95.444	no
[Ref.: #69480]	spore-forming	no	92.38	no
[Ref.: #69480]	thermophile	no	98.411	yes
[Ref.: #69480]	glucose-util	yes	62.116	no
[Ref.: #69480]	aerobic	yes	76.434	no
[Ref.: #69480]	glucose-ferment	no	92.634	no

Availability in culture collections External links

[Ref.: #3854]

Culture collection no.

DSM 10229

[Ref.: #71441]

SI-ID 48782

References

#3854

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10229

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#71441

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48782.1 )

* These data were automatically processed and therefore are not curated

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Nitrobacter hamburgensis X14 X14

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