Name: Sphaerotilus natans 6
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17937

Type strain:

Species: Sphaerotilus natans

Strain Designation: 6

Culture col. no.: DSM 6575, ATCC 13338, LMG 7172

Strain history: <- ATCC <- J.L. Stokes, 6

NCBI tax ID(s): 1286631 (strain), 34103 (species)

SI-ID 4975

LMG 7172, ATCC 13338, NCIB 11197, DSM 6575, NCIMB 11197, VTT E-97866

Special Collections

DSMZ

Other strains from Sphaerotilus natans

Section

Sphaerotilus natans 6 is a Gram-negative bacterium that was isolated from aqueous habitat.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Sphaerotilus*
	Species	**Sphaerotilus natans**
	Full Scientific Name (LPSN)	Sphaerotilus natans Kützing 1833 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2736]

Culture medium

SPHAEROTILUS MEDIUM (DSMZ Medium 51)

[Ref.: #2736]

Culture medium growth

[Ref.: #2736]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2736]

Culture medium composition

expand / minimize

[Ref.: #2736]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #2736]

Culture medium growth

[Ref.: #2736]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #2736]			growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %90.234
[Ref.: #69481]	Ability of spore formation	no Confidence in %99

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2736]	Sample type/isolated from	aqueous habitat
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR749902 (>99% sequence identity) for Sphaerotilus natans subclade from Microbeatlas

Aquatic Samples	16039
Soil Samples	1888
Animal Samples	5244
Plant Samples	1544
Total Samples	24715

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2736]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2736]	Sphaerotilus natans partial 16S rRNA gene, type strain DSM 6575T	FR749902	1513	GenBank ENA	1286631 tax ID
[Ref.: #2736]	Sphaerotilus natans strain 6575 16S ribosomal RNA gene, partial sequence	EU642571	1349	GenBank ENA	1286631 tax ID
[Ref.: #20218]	Sphaerotilus natans 16S ribosomal RNA (16S rRNA)	L33980	315	GenBank ENA	34103 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sphaerotilus natans ATCC 13338	GCA_900156335	scaffold	GenBank ENA	34103 tax ID	*
[Ref.: #66792]	Sphaerotilus natans subsp. natans DSM 6575	GCA_000689195	contig	GenBank ENA	1286631 tax ID	*
[Ref.: #66792]	Sphaerotilus natans strain ATCC 13338	34103.3	wgs	PATRIC	34103 tax ID	*
[Ref.: #66792]	Sphaerotilus natans subsp. natans DSM 6575	1286631.3	wgs	PATRIC	1286631 tax ID	*
[Ref.: #66792]	Sphaerotilus natans ATCC 13338	2681812894	draft	JGI IMG/M	34103 tax ID	*
[Ref.: #66792]	Sphaerotilus natans natans DSM 6575	2576861688	draft	JGI IMG/M	1286631 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sphaerotilus natans ATCC 13338 NCBI: GCA_900156335.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	99	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphaerotilus natans subsp. natans DSM 6575 PATRIC: 1286631.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.797	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.234	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	76.72	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.623	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	74.311	no

Availability in culture collections External links

[Ref.: #2736]

Culture collection no.

DSM 6575, ATCC 13338, LMG 7172

[Ref.: #86926]

SI-ID 4975

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Prevalence of broad-host-range lytic bacteriophages of Sphaerotilus natans, Escherichia coli, and Pseudomonas aeruginosa.	Jensen EC, Schrader HS, Rieland B, Thompson TL, Lee KW, Nickerson KW, Kokjohn TA	Appl Environ Microbiol	10.1128/AEM.64.2.575-580.1998	1998	*
Genetics	The first sequenced Sphaerotilus natans bacteriophage- characterization and potential to control its filamentous bacterium host.	Ferreira R, Amado R, Padrao J, Ferreira V, Dias NM, Melo LDR, Santos SB, Nicolau A	FEMS Microbiol Ecol	10.1093/femsec/fiab029	2021	*
Metabolism	Sphaerotilus natans encrusted with nanoball-shaped Fe(III) oxide minerals formed by nitrate-reducing mixotrophic Fe(II) oxidation.	Park S, Kim DH, Lee JH, Hur HG	FEMS Microbiol Ecol	10.1111/1574-6941.12372	2014	*
Phylogeny	Taxonomic investigation of representatives of the genus Sphaerotilus: descriptions of Sphaerotilus montanus sp. nov., Sphaerotilus hippei sp. nov., Sphaerotilus natans subsp. natans subsp. nov. and Sphaerotilus natans subsp. sulfidivorans subsp. nov., and an emended description of the genus Sphaerotilus.	Gridneva E, Chernousova E, Dubinina G, Akimov V, Kuever J, Detkova E, Grabovich M	Int J Syst Evol Microbiol	10.1099/ijs.0.023887-0	2010	*
Phylogeny	Morphological and biochemical properties of a Sphaerotilus sp. Isolated from paper mill slimes.	Pellegrin V, Juretschko S, Wagner M, Cottenceau G	Appl Environ Microbiol	10.1128/AEM.65.1.156-162.1999	1999	*
Phylogeny	Phylogeny of the Sphaerotilus-Leptothrix group inferred from morphological comparisons, genomic fingerprinting, and 16S ribosomal DNA sequence analyses.	Siering PL, Ghiorse WC	Int J Syst Bacteriol	10.1099/00207713-46-1-173	1996	*

References

#2736

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6575

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86926

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID4975.1 )

* These data were automatically processed and therefore are not curated

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Sphaerotilus natans ATCC 13338

Sphaerotilus natans subsp. natans DSM 6575

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