Allobosea lupini (DSM 26673, CCUG 61248, LMG 26383)

Name: Allobosea lupini (DSM 26673, CCUG 61248, LMG 26383)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1792

Type strain

Strain Designation R-45681

Culture col. no. DSM 26673 CCUG 61248 LMG 26383 R-45681

NCBI tax ID(s) 1036779

Special Collections DSMZ CCUG Literature strains

History DSMZ <- LMG <- A. Willems and S. De Meyer, Group Biochemistry and Microbiology, University of Ghent

Links

Allobosea lupini R-45681 is an aerobe, Gram-negative, motile bacterium that was isolated from root nodules of Lupinus polyphyllus.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 371081

LMG 26383,CCUG 61248,DSM 26673

@ref 20215

Last LPSN update 2026-05-29 08:25:20

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Alloboseaceae

Genus Allobosea

Species Allobosea lupini

Full scientific name Allobosea lupini (De Meyer and Willems 2012) Deshmukh and Oren 2026

Synonyms (1)

Bosea lupini

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
23325	negative	1.2-1.5 µm	0.8 µm	rod-shaped
125438	negative				95.833
125439	negative				92.371

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
23325	YMA
18270	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
18270	positive	growth	28
23325	positive	growth	25
23325	positive	growth	28
23325	positive	growth	33
23325	negative	growth	42
62589	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
62589	aerobe
125439	obligate aerobe	99.588

Spore formation

@ref	Spore formation	Confidence
125439		99.06

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23325	17128 ChEBI	adipate	+/-	assimilation
23325	16947 ChEBI	citrate	+/-	assimilation
23325	17634 ChEBI	D-glucose	+/-	assimilation
23325	16899 ChEBI	D-mannitol	-	assimilation
23325	16024 ChEBI	D-mannose	+/-	assimilation
23325	30849 ChEBI	L-arabinose	+/-	assimilation
23325	25115 ChEBI	malate	+	assimilation
23325	17306 ChEBI	maltose	-	assimilation
23325	506227 ChEBI	N-acetylglucosamine	-	assimilation
23325	17632 ChEBI	nitrate	-	reduction
23325	18401 ChEBI	phenylacetate	-	assimilation
23325	32032 ChEBI	potassium gluconate	+	assimilation

Antibiotic resistance

@ref	ChEBI	Metabolite
23325	2676	amoxicillin
23325	50845	doxycycline
23325	17334	penicillin

Enzymes

@ref	Value	Activity	Ec
23325	beta-glucosidase	+	3.2.1.21
23325	catalase	+	1.11.1.6
23325	cytochrome oxidase	+	1.9.3.1
23325	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root nodule

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
23325	root nodules of Lupinus polyphyllus		Flanders	Belgium	BEL	Europe
62589	Root nodule,Lupinus polyphyllus	2008-09-10	Flanders	Belgium	BEL	Europe
18270	root nodules of Robinia pseudoacacia		garden of the Ghent University	Belgium	BEL	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18270	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2634166302 annotated assembly for Bosea lupini LMG 26383,CCUG 61248,R- 45681	contig	GCA_900109525	1036779.5	2634166302	1036779	74.63

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
18270	Bosea sp. R-45681 partial 16S rRNA gene, strain R-45681	FR774992	1444		946785
124043	Bosea lupini 16S ribosomal RNA gene, partial sequence.	KF730777	1425		1036779

GC content

@ref	GC-content (mol%)	Method
23325	66.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2634166302 annotated assembly for Bosea lupini LMG 26383,CCUG 61248,R- 45681
NCBI: GCA_900109525

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.59	no
125439	gram_stain	BacteriaNetⓘ	negative	92.37	no
125439	motility	BacteriaNetⓘ	yes	45.44	no
125439	spore_formation	BacteriaNetⓘ	no	99.06	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bosea lupini strain LMG 26383,CCUG 61248,R- 45681
PATRIC: 1036779.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.83	yes
125438	anaerobic	anaerobicⓘ	no	96.22	no
125438	spore-forming	spore-formingⓘ	no	88.88	no
125438	aerobic	aerobicⓘ	yes	83.44	no
125438	thermophilic	thermophileⓘ	no	96.83	no
125438	flagellated	motile2+ⓘ	yes	69.49	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Draft genome sequence of Bosea sp. WAO an arsenite and sulfide oxidizer isolated from a pyrite rock outcrop in New Jersey.	Walczak AB, Yee N, Young LY.	Stand Genomic Sci	10.1186/s40793-018-0312-4	2018
	Phylogeny and Phylogeography of Rhizobial Symbionts Nodulating Legumes of the Tribe Genisteae.	Stepkowski T, Banasiewicz J, Granada CE, Andrews M, Passaglia LMP.	Genes (Basel)	10.3390/genes9030163	2018
Phylogeny	Bosea caraganae sp. nov. a new species of slow-growing bacteria isolated from root nodules of the relict species Caragana jubata (Pall.) Poir. originating from Mongolia.	Sazanova AL, Safronova VI, Kuznetsova IG, Karlov DS, Belimov AA, Andronov EE, Chirak ER, Popova JP, Verkhozina AV, Willems A, Tikhonovich IA	Int J Syst Evol Microbiol	10.1099/ijsem.0.003509	2019
Phylogeny	Bosea psychrotolerans sp. nov., a psychrotrophic alphaproteobacterium isolated from Lake Michigan water.	Albert RA, McGuine M, Pavlons SC, Roecker J, Bruess J, Mossman S, Sun S, King M, Hong S, Farrance CE, Danner J, Joung Y, Shapiro N, Whitman WB, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003319	2019
Phylogeny	Multilocus sequence analysis of Bosea species and description of Bosea lupini sp. nov., Bosea lathyri sp. nov. and Bosea robiniae sp. nov., isolated from legumes.	De Meyer SE, Willems A	Int J Syst Evol Microbiol	10.1099/ijs.0.035477-0	2011

References

#18270	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26673
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23325	Sofie E. De Meyer, Anne Willems: Multilocus sequence analysis of Bosea species and description of Bosea lupini sp. nov., Bosea lathyri sp. nov. and Bosea robiniae sp. nov., isolated from legumes. IJSEM 62: 2505 - 2510 2012 ( DOI 10.1099/ijs.0.035477-0 , PubMed 22155761 )
#62589	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 61248
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Allobosea lupini (DSM 26673, CCUG 61248, LMG 26383)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Antibiotic resistance

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900109525

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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