Name: Pseudoteredinibacter isoporae SW-11
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17919

Type strain:

Species: Pseudoteredinibacter isoporae

Strain Designation: SW-11

Culture col. no.: DSM 22368, BCRC 17935, LMG 25246

Strain history: <- J.-H. Chou, Natl. Kaohsiung Marine Univ. Taiwan; SW-11 <- W.-M. Chen

NCBI tax ID(s): 570281 (species)

SI-ID 361399

LMG 25246, BCRC 17935, DSM 22368

Section

Pseudoteredinibacter isoporae SW-11 is a mesophilic, Gram-negative bacterium that was isolated from reef-building coral Isopora palifera.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Cellvibrionales*
	Family	*Cellvibrionaceae*
	Genus	*Pseudoteredinibacter*
	Species	**Pseudoteredinibacter isoporae**
	Full Scientific Name (LPSN)	Pseudoteredinibacter isoporae Chen et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.99

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16190]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #16190]

Culture medium growth

[Ref.: #16190]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16190]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16190]			growth	25 °C

[Ref.: #16190]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.892

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16190]	Sample type/isolated from	reef-building coral Isopora palifera
[Ref.: #16190]	Host species	Isopora palifera
[Ref.: #16190]	Geographic location (country and/or sea, region)	Kenting (21° 52' 35'' N 120° 43' 29'' E)
[Ref.: #16190]	Country	Taiwan
[Ref.: #16190]	Country ISO 3 Code	TWN
[Ref.: #16190]	Continent	Asia
[Ref.: #16190]	Geographic location	21.8764°/120.7250°
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Cnidaria (Corals)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16190]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16190]	Pseudoteredinibacter isoporae strain SW-11 16S ribosomal RNA gene, partial sequence	FJ347760	1406	ENA	570281 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudoteredinibacter isoporae DSM 22368	GCA_014207695	scaffold	GenBank	570281 tax ID	*
[Ref.: #66792]	Pseudoteredinibacter isoporae LMG 25246	GCA_011602085	contig	GenBank	570281 tax ID	*
[Ref.: #66792]	Pseudoteredinibacter isoporae DSM 22368	GCA_011683895	contig	GenBank	570281 tax ID	*
[Ref.: #66792]	Pseudoteredinibacter isoporae strain DSM 22368	570281.4	wgs	PATRIC	570281 tax ID	*
[Ref.: #66792]	Pseudoteredinibacter isoporae strain DSM 22368	570281.5	wgs	PATRIC	570281 tax ID	*
[Ref.: #66792]	Pseudoteredinibacter isoporae strain LMG 25246	570281.3	wgs	PATRIC	570281 tax ID	*

[Ref.: #16190]

GC-content

51.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudoteredinibacter isoporae DSM 22368 NCBI: GCA_014207695.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudoteredinibacter isoporae DSM 22368 NCBI: GCA_014207695.1
[Ref.: #69480]	flagellated	yes	72.773	no
[Ref.: #69480]	gram-positive	no	98.985	no
[Ref.: #69480]	anaerobic	no	99.086	no
[Ref.: #69480]	aerobic	yes	87.53	no
[Ref.: #69480]	halophile	yes	52.752	no
[Ref.: #69480]	spore-forming	no	96.706	no
[Ref.: #69480]	glucose-util	yes	79.009	no
[Ref.: #69480]	thermophile	no	98.101	yes
[Ref.: #69480]	motile	yes	89.485	no
[Ref.: #69480]	glucose-ferment	no	88.65	no

Availability in culture collections External links

[Ref.: #16190]

Culture collection no.

DSM 22368, BCRC 17935, LMG 25246

[Ref.: #86908]

SI-ID 361399

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudoteredinibacter isoporae gen. nov., sp. nov., a marine bacterium isolated from the reef-building coral Isopora palifera.	Chen MH, Sheu SY, Arun AB, Young CC, Chen CA, Wang JT, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.024190-0	2010	*
Phylogeny	Exilibacterium tricleocarpae gen. nov., sp. nov., a marine bacterium from coralline algae Tricleocarpa sp.	Wang G, Zheng X, Xu S, Dang G, Su H, Liao Z, Chen B, Huang W, Liang J, Yu K	Int J Syst Evol Microbiol	10.1099/ijsem.0.004189	2020	*
Phylogeny	Marinibactrum halimedae gen. nov., sp. nov., a gammaproteobacterium isolated from a marine macroalga.	Nishijima M, Adachi K, Sano H, Yamasato K	Int J Syst Evol Microbiol	10.1099/ijsem.0.000502	2015	*
Phylogeny	Aestuariicella hydrocarbonica gen. nov., sp. nov., an aliphatic hydrocarbon-degrading bacterium isolated from a sea tidal flat.	Lo N, Kim KH, Baek K, Jia B, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.000199	2015	*
Phylogeny	Maricurvus nonylphenolicus gen. nov., sp. nov., a nonylphenol-degrading bacterium isolated from seawater.	Iwaki H, Takada K, Hasegawa Y	FEMS Microbiol Lett	10.1111/j.1574-6968.2011.02471.x	2011	*

References

#16190

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22368

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86908

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID361399.1 )

* These data were automatically processed and therefore are not curated

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Pseudoteredinibacter isoporae DSM 22368

Pseudoteredinibacter isoporae DSM 22368

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