Name: Gallaecimonas pentaromativorans CEE_131
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17912

Type strain:

Species: Gallaecimonas pentaromativorans

Strain Designation: CEE_131

Culture col. no.: DSM 21945, CECT 7479

Strain history: <- A. Rodriguez-Bianco, L'observatoire Océanologique de Banyuls, France; CEE131

NCBI tax ID(s): 584787 (species)

SI-ID 368958

CECT 7479, DSM 21945

Section

Gallaecimonas pentaromativorans CEE_131 is a mesophilic, Gram-negative, motile bacterium that was isolated from intertidal sediment.

Gram-negative
motile
rod-shaped
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	"Gallaecimonadaceae"
	Genus	*Gallaecimonas*
	Species	**Gallaecimonas pentaromativorans**
	Full Scientific Name (LPSN)	Gallaecimonas pentaromativorans Rodríguez-Blanco et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29459]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.967

[Ref.: #29459]	Cell shape	rod-shaped

[Ref.: #29459]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %97.74

[Ref.: #29459]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16061]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #16061]

Culture medium growth

[Ref.: #16061]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16061]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16061]	growth	30 °C
[Ref.: #29459]	growth	20-37 °C
[Ref.: #29459]	optimum	30 °C

[Ref.: #16061]	Temperature range	mesophilic
[Ref.: #29459]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29459]			optimum	6.5
[Ref.: #29459]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.889

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29459]		NaCl		growth	<7	%
[Ref.: #29459]		NaCl		optimum	1.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29459]	arabinose ChEBI	+	carbon source
[Ref.: #29459]	citrate ChEBI	+	carbon source
[Ref.: #29459]	esculin ChEBI	+	hydrolysis
[Ref.: #29459]	malate ChEBI	+	carbon source
[Ref.: #29459]	maltose ChEBI	+	carbon source
[Ref.: #29459]	N-acetylglucosamine ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity
[Ref.: #29459]		gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16061]	Sample type/isolated from	intertidal sediment
[Ref.: #16061]	Geographic location (country and/or sea, region)	A Coruña, Corcubion Ria in Cee: 42°57' N, 9°10' W
[Ref.: #16061]	Country	Spain
[Ref.: #16061]	Country ISO 3 Code	ESP
[Ref.: #16061]	Continent	Europe
[Ref.: #16061]	Geographic location	42.9500°/-9.1667°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Tidal flat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FM955227 (>99% sequence identity) for Gallaecimonas pentaromativorans subclade from Microbeatlas

Aquatic Samples	115
Soil Samples	7
Animal Samples	36
Plant Samples	2
Total Samples	160

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16061]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16061]	Gallaecimonas pentaromativorans partial 16S rRNA gene, type strain CEE_131T, clone CEE_131_42	FM955223	1379	ENA	584787 tax ID
[Ref.: #16061]	Gallaecimonas pentaromativorans partial 16S rRNA gene, type strain CEE_131T, clone CEE_131_33	FM955224	1386	ENA	584787 tax ID
[Ref.: #16061]	Gallaecimonas pentaromativorans partial 16S rRNA gene, type strain CEE_131T, clone CEE_131_45	FM955225	1381	ENA	584787 tax ID
[Ref.: #16061]	Gallaecimonas pentaromativorans partial 16S rRNA gene, type strain CEE_131T, clone CEE_131_32	FM955226	1295	ENA	584787 tax ID
[Ref.: #16061]	Gallaecimonas pentaromativorans partial 16S rRNA gene, type strain CEE_131T, clone CEE_131_36	FM955227	1301	ENA	584787 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Gallaecimonas pentaromativorans DSM 21945	GCA_003751625	scaffold	GenBank	584787 tax ID	*
[Ref.: #66792]	Gallaecimonas pentaromativorans strain DSM 21945	584787.4	wgs	PATRIC	584787 tax ID	*
[Ref.: #66792]	Gallaecimonas pentaromativorans DSM 21945	2784746796	draft	JGI IMG/M	584787 tax ID	*

[Ref.: #16061]	GC-content	41.7 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29459]	GC-content	41.7 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Gallaecimonas pentaromativorans DSM 21945 NCBI: GCA_003751625.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Gallaecimonas pentaromativorans DSM 21945 NCBI: GCA_003751625.1
[Ref.: #69480]	motile	yes	91.671	yes
[Ref.: #69480]	flagellated	yes	80.551	no
[Ref.: #69480]	gram-positive	no	98.579	yes
[Ref.: #69480]	anaerobic	no	98.204	no
[Ref.: #69480]	aerobic	yes	91.826	no
[Ref.: #69480]	halophile	no	67.638	no
[Ref.: #69480]	spore-forming	no	94.53	no
[Ref.: #69480]	glucose-util	yes	91.337	no
[Ref.: #69480]	thermophile	no	99.556	yes
[Ref.: #69480]	glucose-ferment	no	76.115	no

Availability in culture collections External links

[Ref.: #16061]

Culture collection no.

DSM 21945, CECT 7479

[Ref.: #86901]

SI-ID 368958

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Gallaecimonas pentaromativorans gen. nov., sp. nov., a bacterium carrying 16S rRNA gene heterogeneity and able to degrade high-molecular-mass polycyclic aromatic hydrocarbons.	Rodriguez-Blanco A, Vetion G, Escande ML, Delille D, Ghiglione JF	Int J Syst Evol Microbiol	10.1099/ijs.0.013532-0	2009	*
Phylogeny	Gallaecimonas xiamenensis sp. nov., isolated from seawater.	Wang J, Lai Q, Duan X, Fu Y, Wang L, Wang W, Shao Z	Int J Syst Evol Microbiol	10.1099/ijs.0.042283-0	2012	*

References

#16061

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21945

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29459

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25863 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86901

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID368958.1 )

#25863

IJSEM 504 2010 ( DOI 10.1099/ijs.0.013532-0 , PubMed 19654338 )

* These data were automatically processed and therefore are not curated

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Gallaecimonas pentaromativorans DSM 21945

Gallaecimonas pentaromativorans DSM 21945

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