Name: Eionea nigra 17X/A02/237
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17900

Type strain:

Species: Eionea nigra

Strain Designation: 17X/A02/237

Culture col. no.: DSM 19752, CIP 109759, MOLA 288

Strain history: CIP <- 2007, L. Urios, Paris Univ. VI, CNRS, Banyuls sur mer, France, strain: 17X/A02/237

NCBI tax ID(s): 287488 (species)

SI-ID 377748

CIP 109759, DSM 19752

Section

Eionea nigra 17X/A02/237 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from coastal waters.

Gram-negative
rod-shaped
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Cellvibrionales*
	Family	*Cellvibrionaceae*
	Genus	*Eionea*
	Species	**Eionea nigra**
	Full Scientific Name (LPSN)	Eionea nigra Urios et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #121295]	Gram stain	negative

[Ref.: #121295]	Cell shape	rod-shaped

[Ref.: #121295]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8292]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #8292]

Culture medium growth

[Ref.: #8292]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8292]

Culture medium composition

expand / minimize

[Ref.: #42015]

Culture medium

Marine agar (MA)

[Ref.: #42015]

Culture medium growth

[Ref.: #42015]

Culture medium composition

expand / minimize

[Ref.: #121295]

Culture medium

CIP Medium 13

[Ref.: #121295]

Culture medium growth

[Ref.: #121295]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #8292]			growth	28 °C
[Ref.: #42015]			growth	30 °C

[Ref.: #8292]	Temperature range	mesophilic
[Ref.: #42015]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #121295]		nitrate ChEBI	-	reduction
[Ref.: #121295]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #121295]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #121295]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121295]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #121295]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121295]	12092	-	+	+	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8292]	Sample type/isolated from	coastal waters
[Ref.: #8292]	Geographic location (country and/or sea, region)	Mediterranean Sea, bay of Banyuls-sur-Mer (42° 29' N 3° 08' E)
[Ref.: #8292]	Country	France
[Ref.: #8292]	Country ISO 3 Code	FRA
[Ref.: #8292]	Continent	Europe
[Ref.: #8292]	Geographic location	42.4833°/3.1333°

[Ref.: #121295]	Sample type/isolated from	Environment, Mediterranean sea
[Ref.: #121295]	Geographic location (country and/or sea, region)	Banyuls sur mer
[Ref.: #121295]	Country	France
[Ref.: #121295]	Country ISO 3 Code	FRA
[Ref.: #121295]	Continent	Europe
[Ref.: #121295]	Isolation date	2002
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY576771 (>99% sequence identity) for Eionea nigra subclade from Microbeatlas

Aquatic Samples	2676
Soil Samples	25
Animal Samples	159
Plant Samples	8
Total Samples	2868

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8292]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121295]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8292]	Eionea nigra strain 17X/A02/237 16S ribosomal RNA gene, partial sequence	AY576771	1463	ENA	287488 tax ID

[Ref.: #8292]

GC-content

47.5 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #8292]

Culture collection no.

DSM 19752, CIP 109759, MOLA 288

[Ref.: #86889]

SI-ID 377748

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Eionea flava sp. nov., isolated from coastal seawater, and emended description of the genus Eionea.	Baek K, Choi A, Cho JC	Int J Syst Evol Microbiol	10.1099/ijs.0.000366	2015	*
Phylogeny	Eionea nigra gen. nov., sp. nov., a gammaproteobacterium from the Mediterranean Sea.	Urios L, Intertaglia L, Lesongeur F, Lebaron P	Int J Syst Evol Microbiol	10.1099/ijs.0.023952-0	2010	*

References

#8292

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19752

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42015 ; Curators of the CIP;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86889

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID377748.1 )

#121295 Collection of Institut Pasteur ; Curators of the CIP; CIP 109759
* These data were automatically processed and therefore are not curated

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