Gleimia coleocanis M343/98/2 is a microaerophile, mesophilic, Gram-positive prokaryote that was isolated from vagina of a Cocker Spaniel dog.
Gram-positive rod-shaped microaerophile mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Actinomycetales |
| Family Actinomycetaceae |
| Genus Gleimia |
| Species Gleimia coleocanis |
| Full scientific name Gleimia coleocanis (Hoyles et al. 2002) Nouioui et al. 2018 |
| Synonyms (1) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 5821 | BHI/2 MEDIUM (DSMZ Medium 217) | Medium recipe at MediaDive | Name: BHI/2 MEDIUM (DSMZ Medium 217) Composition: Brain heart infusion 37.0 g/l Casein hydrolysate 10.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Distilled water | ||
| 5821 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 39597 | MEDIUM 6 - Columbia agar with 10 % horse blood | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml) | |||
| 118334 | CIP Medium 6 | Medium recipe at CIP |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 97.4 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 23114 | 15688 ChEBI | acetoin | - | other | |
| 118334 | 16947 ChEBI | citrate | - | carbon source | |
| 23114 | 23456 ChEBI | cyclodextrin | - | builds acid from | |
| 23114 | 18333 ChEBI | D-arabitol | - | builds acid from | |
| 23114 | 17634 ChEBI | D-glucose | + | builds acid from | |
| 23114 | 65327 ChEBI | D-xylose | - | builds acid from | |
| 23114 | 4853 ChEBI | esculin | - | hydrolysis | |
| 118334 | 4853 ChEBI | esculin | - | hydrolysis | |
| 23114 | 5291 ChEBI | gelatin | - | hydrolysis | |
| 23114 | 28087 ChEBI | glycogen | + | builds acid from | |
| 23114 | 606565 ChEBI | hippurate | - | hydrolysis | |
| 118334 | 606565 ChEBI | hippurate | - | hydrolysis | |
| 23114 | 30849 ChEBI | L-arabinose | - | builds acid from | |
| 23114 | 17716 ChEBI | lactose | + | builds acid from | |
| 23114 | 17306 ChEBI | maltose | - | builds acid from | |
| 23114 | 17306 ChEBI | maltose | + | builds acid from | |
| 23114 | 29864 ChEBI | mannitol | - | builds acid from | |
| 23114 | 6731 ChEBI | melezitose | - | builds acid from | |
| 23114 | 320055 ChEBI | methyl beta-D-glucopyranoside | - | builds acid from | |
| 23114 | 506227 ChEBI | N-acetylglucosamine | - | builds acid from | |
| 23114 | 17632 ChEBI | nitrate | - | reduction | |
| 118334 | 17632 ChEBI | nitrate | - | reduction | |
| 118334 | 17632 ChEBI | nitrate | + | respiration | |
| 118334 | 16301 ChEBI | nitrite | - | reduction | |
| 23114 | 16634 ChEBI | raffinose | - | builds acid from | |
| 23114 | 33942 ChEBI | ribose | - | builds acid from | |
| 23114 | 30911 ChEBI | sorbitol | - | builds acid from | |
| 23114 | 17992 ChEBI | sucrose | - | builds acid from | |
| 23114 | 33954 ChEBI | tagatose | - | builds acid from | |
| 23114 | 27082 ChEBI | trehalose | - | builds acid from |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | - | 3.1.3.2 | from API zym |
| 118334 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 23114 | alkaline phosphatase | - | 3.1.3.1 | |
| 68382 | alkaline phosphatase | - | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | + | 3.2.1.51 | from API zym |
| 23114 | alpha-galactosidase | - | 3.2.1.22 | |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 23114 | alpha-glucosidase | + | 3.2.1.20 | |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 23114 | arginine dihydrolase | - | 3.5.3.6 | |
| 23114 | beta-galactosidase | + | 3.2.1.23 | |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 118334 | beta-galactosidase | + | 3.2.1.23 | |
| 23114 | beta-glucosidase | - | 3.2.1.21 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 23114 | beta-glucuronidase | - | 3.2.1.31 | |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 23114 | catalase | - | 1.11.1.6 | |
| 118334 | catalase | - | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 118334 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 118334 | gelatinase | - | ||
| 23114 | glycyl tryptophan arylamidase | + | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 118334 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 118334 | ornithine decarboxylase | - | 4.1.1.17 | |
| 118334 | oxidase | - | ||
| 118334 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 23114 | pyrazinamidase | + | 3.5.1.B15 | |
| 23114 | pyroglutamic acid arylamidase | - | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 118334 | tryptophan deaminase | - | ||
| 23114 | urease | - | 3.5.1.5 | |
| 118334 | urease | - | 3.5.1.5 | |
| 68382 | valine arylamidase | + | from API zym |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | denitrification | 100 | 2 of 2 | ||
| 66794 | starch degradation | 100 | 10 of 10 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | vitamin K metabolism | 100 | 5 of 5 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | peptidoglycan biosynthesis | 86.67 | 13 of 15 | ||
| 66794 | glycogen metabolism | 80 | 4 of 5 | ||
| 66794 | metabolism of amino sugars and derivatives | 80 | 4 of 5 | ||
| 66794 | valine metabolism | 77.78 | 7 of 9 | ||
| 66794 | palmitate biosynthesis | 77.27 | 17 of 22 | ||
| 66794 | C4 and CAM-carbon fixation | 75 | 6 of 8 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 75 | 6 of 8 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | acetate fermentation | 75 | 3 of 4 | ||
| 66794 | pentose phosphate pathway | 72.73 | 8 of 11 | ||
| 66794 | purine metabolism | 72.34 | 68 of 94 | ||
| 66794 | pyrimidine metabolism | 71.11 | 32 of 45 | ||
| 66794 | formaldehyde oxidation | 66.67 | 2 of 3 | ||
| 66794 | L-lactaldehyde degradation | 66.67 | 2 of 3 | ||
| 66794 | d-mannose degradation | 66.67 | 6 of 9 | ||
| 66794 | acetoin degradation | 66.67 | 2 of 3 | ||
| 66794 | aspartate and asparagine metabolism | 66.67 | 6 of 9 | ||
| 66794 | glycolysis | 64.71 | 11 of 17 | ||
| 66794 | photosynthesis | 64.29 | 9 of 14 | ||
| 66794 | isoleucine metabolism | 62.5 | 5 of 8 | ||
| 66794 | gluconeogenesis | 62.5 | 5 of 8 | ||
| 66794 | isoprenoid biosynthesis | 61.54 | 16 of 26 | ||
| 66794 | NAD metabolism | 61.11 | 11 of 18 | ||
| 66794 | tetrahydrofolate metabolism | 57.14 | 8 of 14 | ||
| 66794 | phenylalanine metabolism | 53.85 | 7 of 13 | ||
| 66794 | oxidative phosphorylation | 52.75 | 48 of 91 | ||
| 66794 | ethanol fermentation | 50 | 1 of 2 | ||
| 66794 | suberin monomers biosynthesis | 50 | 1 of 2 | ||
| 66794 | glycolate and glyoxylate degradation | 50 | 3 of 6 | ||
| 66794 | pantothenate biosynthesis | 50 | 3 of 6 | ||
| 66794 | butanoate fermentation | 50 | 2 of 4 | ||
| 66794 | mannosylglycerate biosynthesis | 50 | 1 of 2 | ||
| 66794 | ketogluconate metabolism | 50 | 4 of 8 | ||
| 66794 | phenylmercury acetate degradation | 50 | 1 of 2 | ||
| 66794 | sulfopterin metabolism | 50 | 2 of 4 | ||
| 66794 | cis-vaccenate biosynthesis | 50 | 1 of 2 | ||
| 66794 | vitamin B1 metabolism | 46.15 | 6 of 13 | ||
| 66794 | methionine metabolism | 46.15 | 12 of 26 | ||
| 66794 | proline metabolism | 45.45 | 5 of 11 | ||
| 66794 | serine metabolism | 44.44 | 4 of 9 | ||
| 66794 | cardiolipin biosynthesis | 42.86 | 3 of 7 | ||
| 66794 | propanol degradation | 42.86 | 3 of 7 | ||
| 66794 | glutamate and glutamine metabolism | 42.86 | 12 of 28 | ||
| 66794 | alanine metabolism | 41.38 | 12 of 29 | ||
| 66794 | glycine metabolism | 40 | 4 of 10 | ||
| 66794 | flavin biosynthesis | 40 | 6 of 15 | ||
| 66794 | threonine metabolism | 40 | 4 of 10 | ||
| 66794 | lipoate biosynthesis | 40 | 2 of 5 | ||
| 66794 | methylglyoxal degradation | 40 | 2 of 5 | ||
| 66794 | coenzyme M biosynthesis | 40 | 4 of 10 | ||
| 66794 | Entner Doudoroff pathway | 40 | 4 of 10 | ||
| 66794 | tryptophan metabolism | 39.47 | 15 of 38 | ||
| 66794 | cysteine metabolism | 38.89 | 7 of 18 | ||
| 66794 | degradation of hexoses | 38.89 | 7 of 18 | ||
| 66794 | non-pathway related | 36.84 | 14 of 38 | ||
| 66794 | metabolism of disaccharids | 36.36 | 4 of 11 | ||
| 66794 | citric acid cycle | 35.71 | 5 of 14 | ||
| 66794 | lipid metabolism | 35.48 | 11 of 31 | ||
| 66794 | enterobactin biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | cyanate degradation | 33.33 | 1 of 3 | ||
| 66794 | sulfoquinovose degradation | 33.33 | 1 of 3 | ||
| 66794 | (5R)-carbapenem carboxylate biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | acetyl CoA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | lipid A biosynthesis | 33.33 | 3 of 9 | ||
| 66794 | octane oxidation | 33.33 | 1 of 3 | ||
| 66794 | selenocysteine biosynthesis | 33.33 | 2 of 6 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 33.33 | 4 of 12 | ||
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | urea cycle | 30.77 | 4 of 13 | ||
| 66794 | myo-inositol biosynthesis | 30 | 3 of 10 | ||
| 66794 | ubiquinone biosynthesis | 28.57 | 2 of 7 | ||
| 66794 | heme metabolism | 28.57 | 4 of 14 | ||
| 66794 | reductive acetyl coenzyme A pathway | 28.57 | 2 of 7 | ||
| 66794 | dolichyl-diphosphooligosaccharide biosynthesis | 27.27 | 3 of 11 | ||
| 66794 | vitamin B6 metabolism | 27.27 | 3 of 11 | ||
| 66794 | lysine metabolism | 26.19 | 11 of 42 | ||
| 66794 | arginine metabolism | 25 | 6 of 24 | ||
| 66794 | degradation of sugar alcohols | 25 | 4 of 16 | ||
| 66794 | lactate fermentation | 25 | 1 of 4 | ||
| 66794 | CMP-KDO biosynthesis | 25 | 1 of 4 | ||
| 66794 | cyclohexanol degradation | 25 | 1 of 4 | ||
| 66794 | biotin biosynthesis | 25 | 1 of 4 | ||
| 66794 | histidine metabolism | 24.14 | 7 of 29 | ||
| 66794 | leucine metabolism | 23.08 | 3 of 13 | ||
| 66794 | arachidonic acid metabolism | 22.22 | 4 of 18 | ||
| 66794 | nitrate assimilation | 22.22 | 2 of 9 | ||
| 66794 | CO2 fixation in Crenarchaeota | 22.22 | 2 of 9 | ||
| 66794 | tyrosine metabolism | 21.43 | 3 of 14 | ||
| 66794 | glutathione metabolism | 21.43 | 3 of 14 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM15901v1 assembly for Gleimia coleocanis DSM 15436 | scaffold | 525245 | 70.38 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 5821 | Actinomyces sp. CCUG 41708 partial 16S rRNA gene | AJ249326 | 1437 | 103618 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 97.40 | no |
| 125439 | motility | BacteriaNetⓘ | no | 95.40 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 95.80 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 97.30 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 91.02 | yes |
| 125438 | anaerobic | anaerobicⓘ | no | 82.86 | yes |
| 125438 | aerobic | aerobicⓘ | no | 81.35 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 87.11 | no |
| 125438 | thermophilic | thermophileⓘ | no | 94.74 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 93.50 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Complete Genome Sequence of Mycobacterium avium subsp. avium Chester (DSM 44156). | Goethe R, Laarmann K, Sproer C, Bunk B. | Microbiol Resour Announc | 10.1128/mra.01549-19 | 2020 | ||
| Phylogeny | Identification and Phylogenetic Analysis of Mycobacterium avium subsp. avium Strain Isolated from Cow. | Bao Y, Yang T, Zhang H, Wang Z, Muhammad I, Jiang X, Ma H. | Transbound Emerg Dis | 10.1155/2023/5384079 | 2023 | |
| Metabolism | Distribution and Evolutionary History of Sialic Acid Catabolism in the Phylum Actinobacteria. | Li Y, Huang Y. | Microbiol Spectr | 10.1128/spectrum.02380-21 | 2022 | |
| Draft Genome Sequence of Rifamycin Derivatives Producing Amycolatopsis mediterranei Strain DSM 46096/S955. | Singh P, Kumari R, Mukherjee U, Saxena A, Sood U, Lal R. | Genome Announc | 10.1128/genomea.00837-14 | 2014 | ||
| An Integrated Approach to Recognize Potential Protective Effects of Culinary Herbs Against Chronic Diseases. | Chandrababu S, Bastola D. | J Healthc Inform Res | 10.1007/s41666-018-0041-x | 2019 | ||
| Complete Genome Sequence of Clostridium stercorarium subsp. stercorarium Strain DSM 8532, a Thermophilic Degrader of Plant Cell Wall Fibers. | Poehlein A, Zverlov VV, Daniel R, Schwarz WH, Liebl W. | Genome Announc | 10.1128/genomea.00073-13 | 2013 | ||
| YGL138(t), encoding a putative signal recognition particle 54 kDa protein, is involved in chloroplast development of rice. | Zhang F, Luo X, Hu B, Wan Y, Xie J. | Rice (N Y) | 10.1186/1939-8433-6-7 | 2013 | ||
| Evaluation of Pyrolysis Oil as Carbon Source for Fungal Fermentation. | Dorsam S, Kirchhoff J, Bigalke M, Dahmen N, Syldatk C, Ochsenreither K. | Front Microbiol | 10.3389/fmicb.2016.02059 | 2016 | ||
| Genetics | Genome-Based Taxonomic Classification of the Phylum Actinobacteria. | Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M. | Front Microbiol | 10.3389/fmicb.2018.02007 | 2018 | |
| Streptomyces poriferorum sp. nov., a novel marine sponge-derived Actinobacteria species expressing anti-MRSA activity. | Sandoval-Powers M, Kralova S, Nguyen GS, Fawwal DV, Degnes K, Lewin AS, Klinkenberg G, Wentzel A, Liles MR. | Syst Appl Microbiol | 10.1016/j.syapm.2021.126244 | 2021 | ||
| Phylogeny | Actinoalloteichus fjordicus sp. nov. isolated from marine sponges: phenotypic, chemotaxonomic and genomic characterisation. | Nouioui I, Ruckert C, Willemse J, van Wezel GP, Klenk HP, Busche T, Kalinowski J, Bredholt H, Zotchev SB. | Antonie Van Leeuwenhoek | 10.1007/s10482-017-0920-9 | 2017 | |
| Phylogeny | Actinomyces coleocanis sp. nov., from the vagina of a dog. | Hoyles L, Falsen E, Foster G, Collins MD | Int J Syst Evol Microbiol | 10.1099/00207713-52-4-1201 | 2002 |
| #5821 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15436 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #23114 | Lesley Hoyles, Enevold Falsen, Geoffrey Foster, Matthew D Collins: Actinomyces coleocanis sp. nov., from the vagina of a dog. IJSEM 52: 1201 - 1203 2002 ( DOI 10.1099/00207713-52-4-1201 , PubMed 12148628 ) |
| #39597 | ; Curators of the CIP; |
| #55185 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 41708 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #68382 | Automatically annotated from API zym . |
| #118334 | Collection of Institut Pasteur ; Curators of the CIP; CIP 106873 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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