Name: Thiohalomonas nitratireducens DSM 16925
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17896

Type strain:

Species: Thiohalomonas nitratireducens

Culture col. no.: DSM 16925, UNIQEM U248, HRhD 3sp

Strain history: <- D. Y. Sorokin, Institute of Microbiology, Russ. Academy of Sciences, Moscow, Russia; HRhD 3sp <- D. Y. Sorokin {2004}

NCBI tax ID(s): 397271 (species)

SI-ID 401279

DSM 16925

Section

Thiohalomonas nitratireducens DSM 16925 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from sediments of hypersaline lakes.

Gram-negative
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Ectothiorhodospiraceae*
	Genus	*Thiohalomonas*
	Species	**Thiohalomonas nitratireducens**
	Full Scientific Name (LPSN)	Thiohalomonas nitratireducens Sorokin et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #32201]	Gram stain	negative

[Ref.: #32201]	Cell length	3 µm

[Ref.: #32201]	Cell width	0.5 µm

[Ref.: #32201]	Cell shape	rod-shaped

[Ref.: #32201]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6646]

Culture medium

THIOHALOMONAS DENITRIFICANS MEDIUM (DSMZ Medium 1058d)

[Ref.: #6646]

Culture medium growth

[Ref.: #6646]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6646]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6646]			growth	30 °C

[Ref.: #6646]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #32201]			optimum	7.9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6646]	Oxygen tolerance	anaerobe
[Ref.: #32201]	Oxygen tolerance	anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32201]		NaCl		growth	1.0-2.5	%
[Ref.: #32201]		NaCl		optimum	1	%

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32201]		nitrate ChEBI	+	reduction

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6646]	Sample type/isolated from	sediments of hypersaline lakes
[Ref.: #6646]	Geographic location (country and/or sea, region)	south-west Siberia
[Ref.: #6646]	Country	Russia
[Ref.: #6646]	Country ISO 3 Code	RUS
[Ref.: #6646]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment
#Condition	#Saline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6646]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6646]	Thiohalomonas nitratireducens strain HRHd 3sp 16S ribosomal RNA gene, partial sequence	DQ836238	1483	ENA	397271 tax ID
[Ref.: #32201]	Thiohalomonas denitrificans strain HLD 16 16S ribosomal RNA gene, partial sequence	DQ469581	1420	GenBank	415747 tax ID

[Ref.: #6646]	GC-content	62.9 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #32201]	GC-content	62.9 mol%

Availability in culture collections External links

[Ref.: #6646]

Culture collection no.

DSM 16925, UNIQEM U248, HRhD 3sp

[Ref.: #86885]

SI-ID 401279

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Thiohalomonas denitrificans gen. nov., sp. nov. and Thiohalomonas nitratireducens sp. nov., novel obligately chemolithoautotrophic, moderately halophilic, thiodenitrifying Gammaproteobacteria from hypersaline habitats.	Sorokin DY, Tourova TP, Braker G, Muyzer G	Int J Syst Evol Microbiol	10.1099/ijs.0.65112-0	2007	*

References

#6646

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16925

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32201

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28443 (see below)

#86885

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401279.1 )

#28443

IJSEM 1582 2007 ( DOI 10.1099/ijs.0.65112-0 , PubMed 17625198 )

* These data were automatically processed and therefore are not curated

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