Name: Sedimenticola selenatireducens AK4OH1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17894

Type strain:

Species: Sedimenticola selenatireducens

Strain Designation: AK4OH1

Culture col. no.: DSM 17993, ATCC BAA-1233

Strain history: <- M. M. Häggblom; AK4OH1 <- V. Knight

NCBI tax ID(s): 1111735 (strain), 191960 (species)

SI-ID 297310

ATCC BAA-1233, DSM 17993

Section

Sedimenticola selenatireducens AK4OH1 is an aerobe, mesophilic, motile bacterium that was isolated from estuarine sediment.

motile
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	"Sedimenticolaceae"
	Genus	*Sedimenticola*
	Species	**Sedimenticola selenatireducens**
	Full Scientific Name (LPSN)	Sedimenticola selenatireducens Narasingarao and Häggblom 2006

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %97.829

[Ref.: #7323]

Incubation period

>14 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7323]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7323]

Culture medium growth

[Ref.: #7323]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7323]

Culture medium composition

expand / minimize

[Ref.: #7323]

Culture medium

SELENATE REDUCER MEDIUM (DSMZ Medium 1049)

[Ref.: #7323]

Culture medium growth

[Ref.: #7323]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7323]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7323]			growth	25 °C

[Ref.: #7323]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7323]	Oxygen tolerance	aerobe
[Ref.: #7323]	Oxygen tolerance	anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.975

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7323]	Sample type/isolated from	estuarine sediment
[Ref.: #7323]	Geographic location (country and/or sea, region)	Arthur Kill, Staten Island
[Ref.: #7323]	Country	USA
[Ref.: #7323]	Country ISO 3 Code	USA
[Ref.: #7323]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Estuary
#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Brackish

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF432145 (>99% sequence identity) for Sedimenticola selenatireducens subclade from Microbeatlas

Aquatic Samples	239
Soil Samples	39
Animal Samples	9
Plant Samples	38
Total Samples	325

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7323]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7323]	Sedimenticola selenatireducens strain AK4OH1 16S ribosomal RNA gene, partial sequence	AF432145	1540	ENA	1111735 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sedimenticola selenatireducens DSM 17993	GCA_000428045	scaffold	GenBank	1111735 tax ID	*
[Ref.: #66792]	Sedimenticola selenatireducens DSM 17993	1111735.3	wgs	PATRIC	1111735 tax ID	*
[Ref.: #66792]	Sedimenticola selenatireducens DSM 17993	2513237155	draft	JGI IMG/M	1111735 tax ID	*

[Ref.: #7323]

GC-content

57 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sedimenticola selenatireducens DSM 17993 DSM 17993 NCBI: GCA_000428045.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sedimenticola selenatireducens DSM 17993 DSM 17993 NCBI: GCA_000428045.1
[Ref.: #69480]	motile	yes	89.183	no
[Ref.: #69480]	flagellated	yes	64.956	no
[Ref.: #69480]	gram-positive	no	99.514	no
[Ref.: #69480]	anaerobic	no	85.43	no
[Ref.: #69480]	aerobic	no	82.601	no
[Ref.: #69480]	halophile	no	78.37	no
[Ref.: #69480]	spore-forming	no	95.687	no
[Ref.: #69480]	glucose-util	yes	52.353	no
[Ref.: #69480]	thermophile	no	97.936	yes
[Ref.: #69480]	glucose-ferment	no	89.823	no

Availability in culture collections External links

[Ref.: #7323]

Culture collection no.

DSM 17993, ATCC BAA-1233

[Ref.: #86883]

SI-ID 297310

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	High-quality draft genome sequence of Sedimenticola selenatireducens strain AK4OH1(T), a gammaproteobacterium isolated from estuarine sediment.	Louie TS, Giovannelli D, Yee N, Narasingarao P, Starovoytov V, Goker M, Klenk HP, Lang E, Kyrpides NC, Woyke T, Bini E, Haggblom MM	Stand Genomic Sci	10.1186/s40793-016-0191-5	2016	*
Phylogeny	Sedimenticola thiotaurini sp. nov., a sulfur-oxidizing bacterium isolated from salt marsh sediments, and emended descriptions of the genus Sedimenticola and Sedimenticola selenatireducens.	Flood BE, Jones DS, Bailey JV	Int J Syst Evol Microbiol	10.1099/ijs.0.000295	2015	*
Metabolism	Sedimenticola selenatireducens, gen. nov., sp. nov., an anaerobic selenate-respiring bacterium isolated from estuarine sediment.	Narasingarao P, Haggblom MM	Syst Appl Microbiol	10.1016/j.syapm.2005.12.011	2006	*

References

#7323

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17993

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86883

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297310.1 )

* These data were automatically processed and therefore are not curated

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Sedimenticola selenatireducens DSM 17993 DSM 17993

Sedimenticola selenatireducens DSM 17993 DSM 17993

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