Name: Aciditerrimonas ferrireducens IC-180
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17890

Type strain:

Species: Aciditerrimonas ferrireducens

Strain Designation: IC-180

Culture col. no.: DSM 45281, JCM 15389

Strain history: T. Itoh IC-180.

NCBI tax ID(s): 1294026 (strain), 667306 (species)

SI-ID 399275

DSM 45281

Section

Aciditerrimonas ferrireducens IC-180 is a thermophilic, Gram-positive bacterium that was isolated from solfataric soil.

Gram-positive
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Acidimicrobiia*
	Order	*Acidimicrobiales*
	Family	[Acidimicrobiales, not assigned to family]
	Genus	*Aciditerrimonas*
	Species	**Aciditerrimonas ferrireducens**
	Full Scientific Name (LPSN)	Aciditerrimonas ferrireducens Itoh et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %94.793

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16166]

Culture medium

AEROBIC SULFOLOBALES MEDIUM WITHOUT SULFUR (DSMZ Medium 1189)

[Ref.: #16166]

Culture medium growth

[Ref.: #16166]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16166]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16166]			growth	50 °C
[Ref.: #67770]			growth	50 °C

[Ref.: #16166]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %94
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16166]	Sample type/isolated from	solfataric soil
[Ref.: #16166]	Geographic location (country and/or sea, region)	Kanagawa, Hakone, Ohwaku-dani
[Ref.: #16166]	Country	Japan
[Ref.: #16166]	Country ISO 3 Code	JPN
[Ref.: #16166]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Solfataric field in Hakone
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Volcanic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB517669 (>99% sequence identity) for Aciditerrimonas ferrireducens subclade from Microbeatlas

Aquatic Samples	215
Soil Samples	963
Animal Samples	35
Plant Samples	30
Total Samples	1243

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16166]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16166]	Aciditerrimonas ferrireducens gene for 16S rRNA, partial sequence	AB517669	1483	ENA	1294026 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Aciditerrimonas ferrireducens JCM 15389	GCA_001311945	contig	GenBank	1294026 tax ID
[Ref.: #66792]	Aciditerrimonas ferrireducens JCM 15389	1294026.5	wgs	PATRIC	1294026 tax ID	*
[Ref.: #66792]	Aciditerrimonas ferrireducens JCM 15389	2728369701	draft	JGI IMG/M	1294026 tax ID	*

[Ref.: #16166]

GC-content

74.1 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aciditerrimonas ferrireducens JCM 15389 PATRIC: 1294026.5
[Ref.: #69481]	spore-forming	no	94	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aciditerrimonas ferrireducens JCM 15389 PATRIC: 1294026.5
[Ref.: #69480]	motile	yes	58.998	no
[Ref.: #69480]	gram-positive	no	65.09	no
[Ref.: #69480]	anaerobic	no	91.418	no
[Ref.: #69480]	aerobic	yes	68.011	no
[Ref.: #69480]	halophile	no	94.962	no
[Ref.: #69480]	spore-forming	no	93.899	no
[Ref.: #69480]	thermophile	yes	69.408	yes
[Ref.: #69480]	glucose-util	yes	85.868	no
[Ref.: #69480]	flagellated	no	93.73	no
[Ref.: #69480]	glucose-ferment	no	72.027	no

Availability in culture collections External links

[Ref.: #16166]

Culture collection no.

DSM 45281, JCM 15389

[Ref.: #86879]

SI-ID 399275

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Elucidating the effect of biofertilizers on bacterial diversity in maize rhizosphere soil.	Wang J, Liu L, Gao X, Hao J, Wang M	PLoS One	10.1371/journal.pone.0249834	2021	*
Phylogeny	Acidiferrimicrobium australe gen. nov., sp. nov., an acidophilic and obligately heterotrophic, member of the Actinobacteria that catalyses dissimilatory oxido-reduction of iron isolated from metal-rich acidic water in Chile.	Gonzalez D, Huber KJ, Tindall B, Hedrich S, Rojas-Villalobos C, Quatrini R, Dinamarca MA, Ibacache-Quiroga C, Schwarz A, Canales C, Nancucheo I	Int J Syst Evol Microbiol	10.1099/ijsem.0.004179	2020	*
Phylogeny	Aciditerrimonas ferrireducens gen. nov., sp. nov., an iron-reducing thermoacidophilic actinobacterium isolated from a solfataric field.	Itoh T, Yamanoi K, Kudo T, Ohkuma M, Takashina T	Int J Syst Evol Microbiol	10.1099/ijs.0.023044-0	2010	*

References

#16166

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45281

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86879

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399275.1 )

* These data were automatically processed and therefore are not curated

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Aciditerrimonas ferrireducens JCM 15389

Aciditerrimonas ferrireducens JCM 15389

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