Name: Mariprofundus ferrooxydans PV-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17871

Type strain:

Species: Mariprofundus ferrooxydans

Strain Designation: PV-1

Culture col. no.: DSM 23021, ATCC BAA-1020

Strain history: <- D. Emerson, Bigelow Lab. for Ocean Sci., Maine, USA; PV-1 <- D. Emerson {1996}

NCBI tax ID(s): 314344 (species)

Section

Mariprofundus ferrooxydans PV-1 is a microaerophile bacterium that was isolated from iron-rich microbial mats associated with a cool , diffuse vent site, 1325 m below the surface.

microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Mariprofundales*
	Family	*Mariprofundaceae*
	Genus	*Mariprofundus*
	Species	**Mariprofundus ferrooxydans**
	Full Scientific Name (LPSN)	Mariprofundus ferrooxydans Emerson et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #16653]

Incubation period

8-14 days

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16653]

Oxygen tolerance

microaerophile

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16653]	Sample type/isolated from	iron-rich microbial mats associated with a cool (23°C), diffuse vent site, 1325 m below the surface
[Ref.: #16653]	Geographic location (country and/or sea, region)	Pacific Ocean, near the Naha vents site on the south rift of Loihi seamount
[Ref.: #16653]	Country	USA
[Ref.: #16653]	Country ISO 3 Code	USA
[Ref.: #16653]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Microbial community

#Microbial mat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF493243 (>99% sequence identity) for Mariprofundus ferrooxydans subclade from Microbeatlas

Aquatic Samples	393
Soil Samples	30
Animal Samples	26
Plant Samples	1
Total Samples	450

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16653]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16653]	Mariprofundus ferrooxydans strain PV-1 16S ribosomal RNA gene, complete sequence	EF493243	1528	ENA	314345 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mariprofundus ferrooxydans PV-1	GCA_000153765	scaffold	GenBank	314345 tax ID	*
[Ref.: #66792]	Mariprofundus ferrooxydans PV-1	314345.13	wgs	PATRIC	314345 tax ID	*
[Ref.: #66792]	Mariprofundus ferrooxydans PV-1	639857004	draft	JGI IMG/M	314345 tax ID	*

[Ref.: #16653]

GC-content

54 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mariprofundus ferrooxydans PV-1 PV-1 NCBI: GCA_000153765.1
[Ref.: #69480]	motile	yes	85.98	no
[Ref.: #69480]	flagellated	no	62.394	no
[Ref.: #69480]	gram-positive	no	98.612	no
[Ref.: #69480]	anaerobic	no	89.574	yes
[Ref.: #69480]	aerobic	no	88.638	no
[Ref.: #69480]	halophile	no	74.379	no
[Ref.: #69480]	spore-forming	no	94.616	no
[Ref.: #69480]	thermophile	no	97.434	no
[Ref.: #69480]	glucose-util	yes	52.856	no
[Ref.: #69480]	glucose-ferment	no	89.354	no

Availability in culture collections External links

[Ref.: #16653]

Culture collection no.

DSM 23021, ATCC BAA-1020

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	A novel lineage of proteobacteria involved in formation of marine Fe-oxidizing microbial mat communities.	Emerson D, Rentz JA, Lilburn TG, Davis RE, Aldrich H, Chan C, Moyer CL	PLoS One	10.1371/journal.pone.0000667	2007	*
Metabolism	Iron Oxidation by a Fused Cytochrome-Porin Common to Diverse Iron-Oxidizing Bacteria.	Keffer JL, McAllister SM, Garber AI, Hallahan BJ, Sutherland MC, Rozovsky S, Chan CS	mBio	10.1128/mBio.01074-21	2021	*
Metabolism	Evidence for auxiliary anaerobic metabolism in obligately aerobic Zetaproteobacteria.	Jain A, Gralnick JA	ISME J	10.1038/s41396-020-0586-6	2020	*
Genetics	Draft Genome Sequence of Mariprofundus ferrooxydans Strain JV-1, Isolated from Loihi Seamount, Hawaii.	Fullerton H, Hager KW, Moyer CL	Genome Announc	10.1128/genomeA.01118-15	2015	*
Metabolism	New Insight into Microbial Iron Oxidation as Revealed by the Proteomic Profile of an Obligate Iron-Oxidizing Chemolithoautotroph.	Barco RA, Emerson D, Sylvan JB, Orcutt BN, Jacobson Meyers ME, Ramirez GA, Zhong JD, Edwards KJ	Appl Environ Microbiol	10.1128/AEM.01374-15	2015	*
Metabolism	Characterization of biogenic iron oxides collected by the newly designed liquid culture method using diffusion chambers.	Kikuchi S, Makita H, Takai K, Yamaguchi N, Takahashi Y	Geobiology	10.1111/gbi.12073	2014	*
Genetics	Comparative genomics of freshwater Fe-oxidizing bacteria: implications for physiology, ecology, and systematics.	Emerson D, Field EK, Chertkov O, Davenport KW, Goodwin L, Munk C, Nolan M, Woyke T	Front Microbiol	10.3389/fmicb.2013.00254	2013	*
Metabolism	Morphology of biogenic iron oxides records microbial physiology and environmental conditions: toward interpreting iron microfossils.	Krepski ST, Emerson D, Hredzak-Showalter PL, Luther GW 3rd, Chan CS	Geobiology	10.1111/gbi.12043	2013	*
Metabolism	Cultivation of an obligate Fe(II)-oxidizing lithoautotrophic bacterium using electrodes.	Summers ZM, Gralnick JA, Bond DR	mBio	10.1128/mBio.00420-12	2013	*
Metabolism	Near-neutral surface charge and hydrophilicity prevent mineral encrustation of Fe-oxidizing micro-organisms.	Saini G, Chan CS	Geobiology	10.1111/gbi.12021	2012	*
Metabolism	Mariprofundus ferrooxydans PV-1 the first genome of a marine Fe(II) oxidizing Zetaproteobacterium.	Singer E, Emerson D, Webb EA, Barco RA, Kuenen JG, Nelson WC, Chan CS, Comolli LR, Ferriera S, Johnson J, Heidelberg JF, Edwards KJ	PLoS One	10.1371/journal.pone.0025386	2011	*
	Structural Iron (II) of Basaltic Glass as an Energy Source for Zetaproteobacteria in an Abyssal Plain Environment, Off the Mid Atlantic Ridge.	Henri PA, Rommevaux-Jestin C, Lesongeur F, Mumford A, Emerson D, Godfroy A, Menez B	Front Microbiol	10.3389/fmicb.2015.01518	2016	*
	Metagenomic insights into the dominant Fe(II) oxidizing Zetaproteobacteria from an iron mat at Lo ihi, Hawai l.	Singer E, Heidelberg JF, Dhillon A, Edwards KJ	Front Microbiol	10.3389/fmicb.2013.00052	2013	*

References

#16653

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23021

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Mariprofundus ferrooxydans PV-1 PV-1

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