Name: Kordiimonas gwangyangensis GW14-5
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17858

Type strain:

Species: Kordiimonas gwangyangensis

Strain Designation: GW14-5

Culture col. no.: DSM 19435, CIP 109032, JCM 12864, KCCM 42021

Strain history: CIP <- 2005, JCM <- 2004, K.K. Kwon and S.J. Kim, Marine Biotechnol. Res. Cent., Ansan, Korea: strain GW14-5

NCBI tax ID(s): 1122137 (strain), 288022 (species)

SI-ID 265605

JCM 12864, CIP 109032, DSM 19435

Special Collections

Section

Kordiimonas gwangyangensis GW14-5 is an aerobe, Gram-negative, motile bacterium that was isolated from sediments of Gwangyang Bay of the South Sea.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Kordiimonadales*
	Family	*Temperatibacteraceae*
	Genus	*Kordiimonas*
	Species	**Kordiimonas gwangyangensis**
	Full Scientific Name (LPSN)	Kordiimonas gwangyangensis Kwon et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31494]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %95.6

[Ref.: #31494]	Cell length	1.35 µm

[Ref.: #31494]	Cell width	0.25 µm

[Ref.: #31494]	Cell shape	rod-shaped

[Ref.: #31494]	Motility	yes

[Ref.: #31494]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8014]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #8014]

Culture medium growth

[Ref.: #8014]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8014]

Culture medium composition

expand / minimize

[Ref.: #36070]

Culture medium

Marine agar (MA)

[Ref.: #36070]

Culture medium growth

[Ref.: #36070]

Culture medium composition

expand / minimize

[Ref.: #119755]

Culture medium

CIP Medium 13

[Ref.: #119755]

Culture medium growth

[Ref.: #119755]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8014]	growth	35 °C
[Ref.: #31494]	growth	17-44 °C
[Ref.: #31494]	optimum	38.5 °C
[Ref.: #36070]	growth	37 °C
[Ref.: #67770]	growth	35 °C

	pH	Kind of pH		pH
[Ref.: #31494]			optimum	7
[Ref.: #31494]			growth	6.0-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31494]

Oxygen tolerance

aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31494]		NaCl		growth	0.5-4	%
[Ref.: #31494]		NaCl		optimum	2	%

[Ref.: #31494]	Observation	aggregates in clumps
[Ref.: #67770]	Observation	quinones: MK-5, Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31494]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #31494]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #31494]	aspartate ChEBI	+	carbon source
[Ref.: #31494]	cellobiose ChEBI	+	carbon source
[Ref.: #31494]	dextrin ChEBI	+	carbon source
[Ref.: #31494]	glucose ChEBI	+	carbon source
[Ref.: #31494]	glutamate ChEBI	+	carbon source
[Ref.: #31494]	glycine ChEBI	+	carbon source
[Ref.: #31494]	maltose ChEBI	+	carbon source
[Ref.: #31494]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #31494]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #31494]	putrescine ChEBI	+	carbon source
[Ref.: #31494]	threonine ChEBI	+	carbon source
[Ref.: #31494]	trehalose ChEBI	+	carbon source
[Ref.: #31494]	tween 40 ChEBI	+	carbon source
[Ref.: #31494]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31494]		catalase	+	1.11.1.6
[Ref.: #31494]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8014]	Sample type/isolated from	sediments of Gwangyang Bay of the South Sea
[Ref.: #8014]	Country	Republic of Korea
[Ref.: #8014]	Country ISO 3 Code	KOR
[Ref.: #8014]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Sediment of Gwangyang Bay
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #119755]	Sample type/isolated from	Environment, Estuarine sediment
[Ref.: #119755]	Geographic location (country and/or sea, region)	Gwangyang bay
[Ref.: #119755]	Country	Republic of Korea
[Ref.: #119755]	Country ISO 3 Code	KOR
[Ref.: #119755]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY682384 (>99% sequence identity) for Kordiimonas gwangyangensis subclade from Microbeatlas

Aquatic Samples	90
Soil Samples	3
Animal Samples	20
Plant Samples	2
Total Samples	115

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8014]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119755]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8014]	Kordiimonas gwangyangensis strain GW14-5 16S ribosomal RNA gene, partial sequence	AY682384	1448	GenBank ENA	1122137 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Kordiimonas gwangyangensis DSM 19435 = JCM 12864	GCA_000375545	contig	GenBank ENA	1122137 tax ID
[Ref.: #67770]	Kordiimonas gwangyangensis DSM 19435 = JCM 12864	GCA_000616065	contig	GenBank ENA	1122137 tax ID
[Ref.: #66792]	Kordiimonas gwangyangensis DSM 19435	1122137.3	wgs	PATRIC	1122137 tax ID	*
[Ref.: #66792]	Kordiimonas gwangyangensis JCM 12864	1236957.3	wgs	PATRIC	1122137 tax ID	*
[Ref.: #66792]	Kordiimonas gwangyangensis DSM 19435	2517093004	draft	JGI IMG/M	1122137 tax ID	*
[Ref.: #66792]	Kordiimonas gwangyangensis JCM 12864	2585427871	draft	JGI IMG/M	1122137 tax ID	*

[Ref.: #8014]	GC-content	58.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #8014]	GC-content	39.3 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31494]	GC-content	39.3 mol%
[Ref.: #67770]	GC-content	55.3-55.9 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Kordiimonas gwangyangensis JCM 12864 PATRIC: 1236957.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kordiimonas gwangyangensis DSM 19435 PATRIC: 1122137.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	95.6	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	90.905	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.122	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	78.89	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.839	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	75.042	no

Availability in culture collections External links

[Ref.: #8014]

Culture collection no.

DSM 19435, CIP 109032, JCM 12864, KCCM 42021

[Ref.: #86849]

SI-ID 265605

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Novel marine carbazole-degrading bacteria.	Maeda R, Nagashima H, Widada J, Iwata K, Omori T	FEMS Microbiol Lett	10.1111/j.1574-6968.2009.01497.x	2009	*
Phylogeny	Kordiimonas sediminis sp. nov., isolated from a sea cucumber culture pond.	Zhang HX, Zhao JX, Chen GJ, Du ZJ	Antonie Van Leeuwenhoek	10.1007/s10482-016-0671-z	2016	*
Phylogeny	Emcibacter nanhaiensis gen. nov. sp. nov., isolated from sediment of the South China Sea.	Liu X, Li G, Lai Q, Sun F, Du Y, Shao Z	Antonie Van Leeuwenhoek	10.1007/s10482-015-0381-y	2015	*
Phylogeny	Eilatimonas milleporae gen. nov., sp. nov., a marine bacterium isolated from the hydrocoral Millepora dichotoma.	Paramasivam N, Ben-Dov E, Arotsker L, Kushmaro A	Int J Syst Evol Microbiol	10.1099/ijs.0.043976-0	2012	*
Phylogeny	Description of Kordiimonas aquimaris sp. nov., isolated from seawater, and emended descriptions of the genus Kordiimonas Kwon et al. 2005 emend. Xu et al. 2011 and of its existing species.	Yang SH, Kim MR, Seo HS, Lee SH, Lee JH, Kim SJ, Kwon KK	Int J Syst Evol Microbiol	10.1099/ijs.0.038893-0	2012	*
Phylogeny	Kordiimonas aestuarii sp. nov., a marine bacterium isolated from a tidal flat.	Math RK, Jeong SH, Jin HM, Park MS, Kim JM, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.038943-0	2012	*
Phylogeny	Kordiimonas gwangyangensis gen. nov., sp. nov., a marine bacterium isolated from marine sediments that forms a distinct phyletic lineage (Kordiimonadales ord. nov.) in the 'Alphaproteobacteria'.	Kwon KK, Lee HS, Yang SH, Kim SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.63684-0	2005	*

References

#8014

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19435

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31494

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27792 (see below)

#36070 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86849

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID265605.1 )

#119755 Collection of Institut Pasteur ; Curators of the CIP; CIP 109032

#27792

IJSEM 2033 2005 ( DOI 10.1099/ijs.0.63684-0 , PubMed 16166706 )

* These data were automatically processed and therefore are not curated

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Kordiimonas gwangyangensis JCM 12864

Kordiimonas gwangyangensis DSM 19435

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