Name: Methanoregula formicica SMSP
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17857

Type strain:

Species: Methanoregula formicica

Strain Designation: SMSP

Culture col. no.: DSM 22288, NBRC 105244

Strain history: <- H. Imachi, Japan Agency for Marine-Earth Sci. and Technol. (JAMSTEC), Extremobiosphere Res. Center, Yokosuka; SMSP <- Y. Yashiro {2008}

NCBI tax ID(s): 882104 (species)

SI-ID 405601

DSM 22288

Section

Methanoregula formicica SMSP is an anaerobe, mesophilic, rod-shaped archaeon that was isolated from methanogenic granular sludge.

rod-shaped
anaerobe
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	"Methanomicrobia"
	Order	*Methanomicrobiales*
	Family	*Methanoregulaceae*
	Genus	*Methanoregula*
	Species	**Methanoregula formicica**
	Full Scientific Name (LPSN)	Methanoregula formicica Yashiro et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #29522]	Cell length	4 µm

[Ref.: #29522]	Cell width	0.5 µm

[Ref.: #29522]	Cell shape	rod-shaped

[Ref.: #29522]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16134]

Culture medium

PELOTOMACULUM MEDIUM (DSMZ Medium 960)

[Ref.: #16134]

Culture medium growth

[Ref.: #16134]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16134]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16134]	growth	30 °C
[Ref.: #29522]	growth	10-40 °C
[Ref.: #29522]	optimum	31.5 °C

[Ref.: #16134]	Temperature range	mesophilic
[Ref.: #29522]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29522]			optimum	7.4
[Ref.: #29522]			growth	7.0-7.6

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16134]	Oxygen tolerance	anaerobe
[Ref.: #29522]	Oxygen tolerance	anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29522]		NaCl		growth	0-1	%

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16134]	Sample type/isolated from	methanogenic granular sludge
[Ref.: #16134]	Geographic location (country and/or sea, region)	Ehime, Saijo
[Ref.: #16134]	Country	Japan
[Ref.: #16134]	Country ISO 3 Code	JPN
[Ref.: #16134]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Waste	#Activated sludge
#Condition	#Anoxic (anaerobic)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16134]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16134]	Methanoregula formicicum SMSP gene for 16S rRNA, partial sequence	AB479390	1397	ENA	593750 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methanoregula formicica SMSP	GCA_000327485	complete	GenBank	593750 tax ID	*
[Ref.: #66792]	Methanoregula formicica SMSP, DSM 22288	2508501105	complete	JGI IMG/M	593750 tax ID	*
[Ref.: #66792]	Methanoregula formicica SMSP	593750.7	complete	PATRIC	593750 tax ID	*

[Ref.: #16134]	GC-content	56.2 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29522]	GC-content	56.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methanoregula formicica SMSP SMSP NCBI: GCA_000327485.1
[Ref.: #69480]	motile	no	91.424	yes
[Ref.: #69480]	flagellated	no	96.593	yes
[Ref.: #69480]	gram-positive	no	95.521	no
[Ref.: #69480]	anaerobic	yes	98.519	yes
[Ref.: #69480]	aerobic	no	95.783	yes
[Ref.: #69480]	halophile	no	93.175	yes
[Ref.: #69480]	spore-forming	no	93.021	no
[Ref.: #69480]	thermophile	no	91.45	no
[Ref.: #69480]	glucose-util	yes	56.428	no
[Ref.: #69480]	glucose-ferment	no	63.555	no

Availability in culture collections External links

[Ref.: #16134]

Culture collection no.

DSM 22288, NBRC 105244

[Ref.: #86848]

SI-ID 405601

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methanoregula formicica sp. nov., a methane-producing archaeon isolated from methanogenic sludge.	Yashiro Y, Sakai S, Ehara M, Miyazaki M, Yamaguchi T, Imachi H	Int J Syst Evol Microbiol	10.1099/ijs.0.014811-0	2009	*

References

#16134

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22288

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29522

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25919 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#86848

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405601.1 )

#25919

IJSEM 53 2011 ( DOI 10.1099/ijs.0.014811-0 , PubMed 19667393 )

* These data were automatically processed and therefore are not curated

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Methanoregula formicica SMSP SMSP

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