Name: Methanolinea mesophila TNR
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17854

Type strain:

Species: Methanolinea mesophila

Strain Designation: TNR

Culture col. no.: DSM 23604, NBRC 105659

Strain history: <- I.-C. Tseng, National Cheng Kung University, Dept. of Life Sciences, Tainan, Taiwan; TNR <- S. Sakai and H. Imachi {2005}

NCBI tax ID(s): 547055 (species)

SI-ID 397688

DSM 23604

Section

Methanolinea mesophila TNR is an anaerobe, mesophilic, rod-shaped archaeon that was isolated from rice field soil.

rod-shaped
anaerobe
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	"Methanomicrobia"
	Order	*Methanomicrobiales*
	Family	*Methanoregulaceae*
	Genus	*Methanolinea*
	Species	**Methanolinea mesophila**
	Full Scientific Name (LPSN)	Methanolinea mesophila Sakai et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30394]	Cell length	4.25 µm

[Ref.: #30394]	Cell width	0.3 µm

[Ref.: #30394]	Cell shape	rod-shaped

[Ref.: #30394]	Motility	no

[Ref.: #17235]

Incubation period

>14 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17235]

Culture medium

PELOTOMACULUM MEDIUM (DSMZ Medium 960)

[Ref.: #17235]

Culture medium growth

[Ref.: #17235]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17235]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17235]	growth	37 °C
[Ref.: #30394]	growth	20-40 °C
[Ref.: #30394]	optimum	37 °C

[Ref.: #17235]	Temperature range	mesophilic
[Ref.: #30394]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30394]			optimum	7
[Ref.: #30394]			growth	6.5-7.4

Information on physiology and metabolism Physiology and metabolism

[Ref.: #17235]	Oxygen tolerance	anaerobe
[Ref.: #30394]	Oxygen tolerance	anaerobe

	Metabolite production	Metabolite	Production
[Ref.: #30394]		methane ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17235]	Sample type/isolated from	rice field soil
[Ref.: #17235]	Geographic location (country and/or sea, region)	Taiwan, Tainan
[Ref.: #17235]	Country	China
[Ref.: #17235]	Country ISO 3 Code	CHN
[Ref.: #17235]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB447467 (>99% sequence identity) for Methanolinea mesophila subclade from Microbeatlas

Aquatic Samples	249
Soil Samples	221
Animal Samples	4
Plant Samples	16
Total Samples	490

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17235]	Methanolinea mesophila gene for 16S ribosomal RNA, partial sequence	AB447467	1397	ENA	547055 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methanolinea mesophila DSM 23604	GCA_017873855	contig	GenBank	547055 tax ID	*
[Ref.: #66792]	Methanolinea mesophila DSM 23604	2913416594	draft	JGI IMG/M	547055 tax ID	*

[Ref.: #17235]	GC-content	56.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30394]	GC-content	56.4 mol%

Availability in culture collections External links

[Ref.: #17235]

Culture collection no.

DSM 23604, NBRC 105659

[Ref.: #86845]

SI-ID 397688

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methanolinea mesophila sp. nov., a hydrogenotrophic methanogen isolated from rice field soil, and proposal of the archaeal family Methanoregulaceae fam. nov. within the order Methanomicrobiales.	Sakai S, Ehara M, Tseng IC, Yamaguchi T, Brauer SL, Cadillo-Quiroz H, Zinder SH, Imachi H	Int J Syst Evol Microbiol	10.1099/ijs.0.035048-0	2011	*

References

#17235

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23604

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30394

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26731 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86845

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397688.1 )

#26731

IJSEM 1389 2012 ( DOI 10.1099/ijs.0.035048-0 , PubMed 21841010 )

* These data were automatically processed and therefore are not curated

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