Pararhizobium capsulatum 216 is a mesophilic prokaryote that was isolated from eutrophic forest pond.
mesophilic genome sequence 16S sequence| @ref 20215 |
Last LPSN update
2025-12-16 09:47:11 |
| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Alphaproteobacteria |
| Order Hyphomicrobiales |
| Family Rhizobiaceae |
| Genus Pararhizobium |
| Species Pararhizobium capsulatum |
| Full scientific name Pararhizobium capsulatum (Hirsch and Müller 1986) Mousavi et al. 2016 |
| Synonyms (1) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 561 | PYGV AGAR (DSMZ Medium 621) | Medium recipe at MediaDive  | Name: PYGV AGAR (DSMZ Medium 621) Composition: Agar 15.0 g/l MgSO4 x 7 H2O 0.625264 g/l Glucose 0.25 g/l Peptone 0.25 g/l Yeast extract 0.25 g/l Nitrilotriacetic acid 0.210526 g/l CaCl2 x 2 H2O 0.0703158 g/l FeSO4 x 7 H2O 0.00208422 g/l Na2MoO4 x 2 H2O 0.000266736 g/l Pyridoxine hydrochloride 0.0001 g/l p-Aminobenzoic acid 5e-05 g/l D-Calcium pantothenate 5e-05 g/l Nicotinamide 5e-05 g/l Thiamine-HCl x 2 H2O 5e-05 g/l Riboflavine 5e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Vitamin B12 1e-06 g/l Metall salt sol. 44 Distilled water |
| @ref | Growth | Type | Temperature (°C) | Range | |
|---|---|---|---|---|---|
| 561 | positive | growth | 26 | mesophilic |
| @ref | Sample type | Geographic location | Country | Country ISO 3 Code | Continent | |
|---|---|---|---|---|---|---|
| 561 | eutrophic forest pond | Schleswig-Holstein, Kiel near Westensea | Germany | DEU | Europe |
Global distribution of 16S sequence X73042 (>99% sequence identity) for Pararhizobium capsulatum from Microbeatlas 
 Aquatic Samples |
713 |
 Soil Samples |
457 |
 Animal Samples |
374 |
 Plant Samples |
267 |
| Total Samples | 1811 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 124043 | ASM3081447v1 assembly for Pararhizobium capsulatum DSM 1112 | contig | GCA_030814475   | 1121113.3  | 2927149029  | 1121113 | 74.13 |  |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 561 | Blastobacter capsulatus 16S rRNA gene, strain IFAM 1004 | X73042 | 1421 |  | 34014 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 561 | 58.9 | thermal denaturation, midpoint method (Tm) |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Characterization of a novel endo-levanase from Azotobacter chroococcum DSM 2286 and its application for the production of prebiotic fructooligosaccharides | Hovels M, Kosciow K, Deppenmeier U. | Carbohydrate polymers. | 2022 | | ||
| Metabolism | Characterization of a novel endo-levanase from Azotobacter chroococcum DSM 2286 and its application for the production of prebiotic fructooligosaccharides. | Hovels M, Kosciow K, Deppenmeier U. | Carbohydr Polym | 10.1016/j.carbpol.2020.117384 | 2021 | |
| Phylogeny | Impact of Fertilisation on the Bacterial Core Microbiome of Grassland Soils: Abundance in the Field and Growth In Vitro. | Chamedjeu RR, Jani K, Jetter K, Wilhelm K, Schafer P, Wilfert L, Sommer S, Riedel CU. | Environ Microbiol Rep | 10.1111/1758-2229.70235 | 2025 | |
| Genetics | Ecogenomic insights into the resilience of keystone Blastococcus Species in extreme environments: a comprehensive analysis. | Sbissi I, Chouikhi F, Ghodhbane-Gtari F, Gtari M. | BMC Genomics | 10.1186/s12864-025-11228-2 | 2025 | |
| Enzymology | Enzymatic synthesis of 10-oxostearic acid in high space-time yield via cascade reaction of a new oleate hydratase and an alcohol dehydrogenase. | Wu YX, Pan J, Yu HL, Xu JH. | J Biotechnol | 10.1016/j.btecx.2019.100008 | 2019 | |
| Metabolism | Single-stage photofermentative biohydrogen production from sugar beet molasses by different purple non-sulfur bacteria. | Sagir E, Ozgur E, Gunduz U, Eroglu I, Yucel M. | Bioprocess Biosyst Eng | 10.1007/s00449-017-1815-x | 2017 | |
| Metabolism | Synergistic dark and photo-fermentation continuous system for hydrogen production from molasses by Clostridium acetobutylicum ATCC 824 and Rhodobacter capsulatus DSM 1710. | Morsy FM. | J Photochem Photobiol B | 10.1016/j.jphotobiol.2017.02.011 | 2017 | |
| Metabolism | Long-term biological hydrogen production by agar immobilized Rhodobacter capsulatus in a sequential batch photobioreactor. | Elkahlout K, Alipour S, Eroglu I, Gunduz U, Yucel M. | Bioprocess Biosyst Eng | 10.1007/s00449-016-1723-5 | 2017 | |
| A rare peptide scaffold in kineomicins, the glycopeptide antibiotics produced by Actinokineospora auranticolor DSM 44650. | Yushchuk O, Berini F, Zhong L, Ruckert-Reed C, Bernasconi E, Bartolone L, Busche T, Kalinowski J, Sussmuth RD, Marinelli F. | Commun Chem | 10.1038/s42004-025-01534-x | 2025 | | |
| Draft Genome Sequences of Two Heat-Resistant Mutant Strains (A52 and B41) of the Photosynthetic Hydrogen-Producing Bacterium Rhodobacter capsulatus. | Gokce A, Cakar ZP, Yucel M, Ozcan O, Sencan S, Sertdemir I, Erguner B, Yuceturk B, Sarac A, Yuksel B, Ozturk Y. | Genome Announc | 10.1128/genomea.00531-16 | 2016 | | |
| Chemoenzymatic Synthesis of Tenofovir. | Zdun B, Reiter T, Kroutil W, Borowiecki P. | J Org Chem | 10.1021/acs.joc.3c01005 | 2023 | | |
| Metabolism | An exceptionally DMSO-tolerant alcohol dehydrogenase for the stereoselective reduction of ketones. | Lavandera I, Kern A, Schaffenberger M, Gross J, Glieder A, de Wildeman S, Kroutil W. | ChemSusChem | 10.1002/cssc.200800032 | 2008 | |
| Lacticaseibacillus rhamnosus CA15 (DSM 33960) as a Candidate Probiotic Strain for Human Health. | Pino A, Vaccalluzzo A, Caggia C, Balzaretti S, Vanella L, Sorrenti V, Ronkainen A, Satokari R, Randazzo CL. | Nutrients | 10.3390/nu14224902 | 2022 | | |
| Identification and classification of antiviral defence systems in bacteria and archaea with PADLOC reveals new system types. | Payne LJ, Todeschini TC, Wu Y, Perry BJ, Ronson CW, Fineran PC, Nobrega FL, Jackson SA. | Nucleic Acids Res | 10.1093/nar/gkab883 | 2021 | | |
| Genome Sequence and Characterization of a Xanthorhodopsin-Containing, Aerobic Anoxygenic Phototrophic Rhodobacter Species, Isolated from Mesophilic Conditions at Yellowstone National Park. | Kyndt JA, Robertson S, Shoffstall IB, Ramaley RF, Meyer TE. | Microorganisms | 10.3390/microorganisms10061169 | 2022 | | |
| Identification of a transposable genomic island of Paracoccus pantotrophus DSM 11072 by its transposition to a novel entrapment vector pMMB2. | Mikosa M, Sochacka-Pietal M, Baj J, Bartosik D. | Microbiology (Reading) | 10.1099/mic.0.28603-0 | 2006 | | |
| Molecular characterization of functional modules of plasmid pWKS1 of Paracoccus pantotrophus DSM 11072. | Bartosik D, Baj J, Sochacka M, Piechucka E, Wlodarczyk M. | Microbiology (Reading) | 10.1099/00221287-148-9-2847 | 2002 | | |
| Synthesis of alpha-hydroxy ketones and vicinal (R,R)-diols by Bacillus clausii DSM 8716T butanediol dehydrogenase. | Muschallik L, Molinnus D, Jablonski M, Kipp CR, Bongaerts J, Pohl M, Wagner T, Schoning MJ, Selmer T, Siegert P. | RSC Adv | 10.1039/d0ra02066d | 2020 | | |
| Oil Essential Mouthwashes Antibacterial Activity against Aggregatibacter actinomycetemcomitans: A Comparison between Antibiofilm and Antiplanktonic Effects. | Erriu M, Pili FM, Tuveri E, Pigliacampo D, Scano A, Montaldo C, Piras V, Denotti G, Pilloni A, Garau V, Orru G. | Int J Dent | 10.1155/2013/164267 | 2013 | | |
| Enzymology | Sulfide-quinone reductase from Rhodobacter capsulatus. Purification, cloning, and expression. | Schutz M, Shahak Y, Padan E, Hauska G. | J Biol Chem | 10.1074/jbc.272.15.9890 | 1997 | |
| Assessment of Pasteurella multocida A Lipopolysaccharide, as an Adhesin in an In Vitro Model of Rabbit Respiratory Epithelium. | Gallego C, Romero S, Esquinas P, Patino P, Martinez N, Iregui C. | Vet Med Int | 10.1155/2017/8967618 | 2017 | | |
| Enzymology | Simultaneous hydrogen and ethanol production from cascade utilization of mono-substrate in integrated dark and photo-fermentative reactor. | Liu BF, Xie GJ, Wang RQ, Xing DF, Ding J, Zhou X, Ren HY, Ma C, Ren NQ. | Biotechnol Biofuels | 10.1186/s13068-014-0191-x | 2015 | |
| Molecular characterization of plasmid pMbo4.6 of Moraxella bovis ATCC 10900. | Furmanek-Blaszk B, Kurpiewska N, Boratynski R, Sektas M. | Curr Microbiol | 10.1007/s00284-012-0257-6 | 2013 | | |
| Incidence of Bacteriocins Produced by Food-Related Lactic Acid Bacteria Active towards Oral Pathogens. | Zoumpopoulou G, Pepelassi E, Papaioannou W, Georgalaki M, Maragkoudakis PA, Tarantilis PA, Polissiou M, Tsakalidou E, Papadimitriou K. | Int J Mol Sci | 10.3390/ijms14034640 | 2013 | | |
| Metabolism | Bioengineering of a Nisin A-producing Lactococcus lactis to create isogenic strains producing the natural variants Nisin F, Q and Z. | Piper C, Hill C, Cotter PD, Ross RP. | Microb Biotechnol | 10.1111/j.1751-7915.2010.00207.x | 2011 | |
| Enzymology | Design and evaluation of 16S rRNA sequence based oligonucleotide probes for the detection and quantification of Comamonas testosteroni in mixed microbial communities. | Bathe S, Hausner M. | BMC Microbiol | 10.1186/1471-2180-6-54 | 2006 | |
| Metabolism | Plasmids of carotenoid-producing Paracoccus spp. (Alphaproteobacteria) - structure, diversity and evolution. | Maj A, Dziewit L, Czarnecki J, Wlodarczyk M, Baj J, Skrzypczyk G, Giersz D, Bartosik D. | PLoS One | 10.1371/journal.pone.0080258 | 2013 | |
| Phylogeny | Identification and specific detection of a novel pseudomonadaceae cluster associated with soils from winter wheat plots of a long-term agricultural field experiment. | Pesaro M, Widmer F. | Appl Environ Microbiol | 10.1128/aem.72.1.37-43.2006 | 2006 | |
| Metabolism | Evidence for natural horizontal transfer of the pcpB gene in the evolution of polychlorophenol-degrading sphingomonads. | Tiirola MA, Wang H, Paulin L, Kulomaa MS. | Appl Environ Microbiol | 10.1128/aem.68.9.4495-4501.2002 | 2002 | |
| Identification and distribution of insertion sequences of Paracoccus solventivorans. | Bartosik D, Szymanik M, Baj J. | Appl Environ Microbiol | 10.1128/aem.69.12.7002-7008.2003 | 2003 | | |
| Metabolism | Catabolism of 1,5-anhydro-D-fructose in Sinorhizobium morelense S-30.7.5: discovery, characterization, and overexpression of a new 1,5-anhydro-D-fructose reductase and its application in sugar analysis and rare sugar synthesis. | Kuhn A, Yu S, Giffhorn F. | Appl Environ Microbiol | 10.1128/aem.72.2.1248-1257.2006 | 2006 | |
| Phylogeny | Identification of nitrite-oxidizing bacteria with monoclonal antibodies recognizing the nitrite oxidoreductase. | Bartosch S, Wolgast I, Spieck E, Bock E. | Appl Environ Microbiol | 10.1128/aem.65.9.4126-4133.1999 | 1999 | |
| Phylogeny and Phylogeography of Rhizobial Symbionts Nodulating Legumes of the Tribe Genisteae. | Stepkowski T, Banasiewicz J, Granada CE, Andrews M, Passaglia LMP. | Genes (Basel) | 10.3390/genes9030163 | 2018 | | |
| Planococcus notacanthi sp. nov., isolated from the skin of a deep-sea snub-nosed spiny eel. | Uniacke-Lowe S, Stanton C, Hill C, Ross P. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.006298 | 2024 | | |
| Phylogeny | Pseudomonas zhaodongensis sp. nov., isolated from saline and alkaline soils. | Zhang L, Pan Y, Wang K, Zhang X, Zhang C, Zhang S, Fu X, Jiang J. | Int J Syst Evol Microbiol | 10.1099/ijs.0.000057 | 2015 | |
| Phylogeny | Novosphingobium marinum sp. nov., isolated from seawater. | Huo YY, You H, Li ZY, Wang CS, Xu XW. | Int J Syst Evol Microbiol | 10.1099/ijs.0.070433-0 | 2015 | |
| Phylogeny | Streptomyces calidiresistens sp. nov., isolated from a hot spring sediment. | Duan YY, Ming H, Dong L, Yin YR, Zhang Y, Zhou EM, Liu L, Nie GX, Li WJ. | Antonie Van Leeuwenhoek | 10.1007/s10482-014-0180-x | 2014 | |
| Genetics | Rhodoalgimonas zhirmunskyi gen. nov., sp. nov., a Marine Alphaproteobacterium Isolated from the Pacific Red Alga Ahnfeltia tobuchiensis: Phenotypic Characterization and Pan-Genome Analysis. | Nedashkovskaya O, Otstavnykh N, Balabanova L, Bystritskaya E, Kim SG, Zhukova N, Tekutyeva L, Isaeva M. | Microorganisms | 10.3390/microorganisms11102463 | 2023 | |
| Phylogeny | Blastococcus endophyticus sp. nov., an actinobacterium isolated from Camptotheca acuminata. | Zhu WY, Zhang JL, Qin YL, Xiong ZJ, Zhang DF, Klenk HP, Zhao LX, Xu LH, Li WJ. | Int J Syst Evol Microbiol | 10.1099/ijs.0.049239-0 | 2013 | |
| Three Novel Marine Species of Paracoccus, P. aerodenitrificans sp. nov., P. sediminicola sp. nov. and P. albus sp. nov., and the Characterization of Their Capability to Perform Heterotrophic Nitrification and Aerobic Denitrification. | Zhang K, Zeng Q, Jiang R, Shi S, Yang J, Long L, Tian X. | Microorganisms | 10.3390/microorganisms11061532 | 2023 | | |
| Phylogeny | Stenotrophomonas ginsengisoli sp. nov., isolated from a ginseng field. | Kim HB, Srinivasan S, Sathiyaraj G, Quan LH, Kim SH, Bui TPN, Liang ZQ, Kim YJ, Yang DC. | Int J Syst Evol Microbiol | 10.1099/ijs.0.014662-0 | 2010 | |
| Enzymology | Bosea minatitlanensis sp. nov., a strictly aerobic bacterium isolated from an anaerobic digester. | Ouattara AS, Assih EA, Thierry S, Cayol JL, Labat M, Monroy O, Macarie H. | Int J Syst Evol Microbiol | 10.1099/ijs.0.02540-0 | 2003 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive1785.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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