Haloactinopolyspora alba (DSM 45211, KCTC 19409, YIM 93246)

Cell morphology

Multimedia

• @ref:	15781
  multimedia content:	DSM_45211.jpg
  multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45211.jpg
  caption:	Medium 1302 37°C
  intellectual property rights:	© Leibniz-Institut DSMZ
  manual_annotation:	1

Culture medium

@ref	Name	Growth	Medium link	Composition
15781	YIM MEDIUM + 10 % NACL (DSMZ Medium 1302)		Medium recipe at MediaDive	Name: YIM MEDIUM + 10 % NaCl (DSMZ Medium 1302) Composition: NaCl 100.0 g/l Agar 20.0 g/l Yeast extract 2.0 g/l CaCO3 1.0 g/l Glucose 1.0 g/l Tryptone 0.5 g/l Distilled water
15781	STARCH-MINERAL SALT-AGAR (STMS) + 10%NACL (DSMZ Medium 1240)		Medium recipe at MediaDive	Name: STARCH-MINERAL SALT-AGAR (STMS) + 10%NACL (DSMZ Medium 1240) Composition: NaCl 100.0 g/l Agar 15.0 g/l Starch 10.0 g/l (NH4)2SO4 2.0 g/l CaCO3 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 1.0 g/l FeSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

Culture pH

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29815	29016 ChEBI	arginine	+	carbon source
29815	17057 ChEBI	cellobiose	+	carbon source
29815	4853 ChEBI	esculin	+	hydrolysis
29815	28757 ChEBI	fructose	+	carbon source
29815	27570 ChEBI	histidine	+	carbon source
29815	17716 ChEBI	lactose	+	carbon source
29815	17306 ChEBI	maltose	+	carbon source
29815	37684 ChEBI	mannose	+	carbon source
29815	26271 ChEBI	proline	+	carbon source
29815	26546 ChEBI	rhamnose	+	carbon source
29815	17822 ChEBI	serine	+	carbon source
29815	30911 ChEBI	sorbitol	+	carbon source
29815	17992 ChEBI	sucrose	+	carbon source
29815	26986 ChEBI	threonine	+	carbon source
29815	27082 ChEBI	trehalose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29815	alkaline phosphatase	+	3.1.3.1

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions	external links
66794	phenylmercury acetate degradation	100	2 of 2
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	pentose phosphate pathway	100	11 of 11
66794	glycogen metabolism	100	5 of 5
66794	myo-inositol biosynthesis	100	10 of 10
66794	sulfoquinovose degradation	100	3 of 3
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	acetate fermentation	100	4 of 4
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	butanoate fermentation	100	4 of 4
66794	valine metabolism	100	9 of 9
66794	lipoate biosynthesis	100	5 of 5
66794	dTDPLrhamnose biosynthesis	100	8 of 8
66794	vitamin K metabolism	100	5 of 5
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	aerobactin biosynthesis	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	sulfopterin metabolism	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	formaldehyde oxidation	100	3 of 3
66794	ribulose monophosphate pathway	100	2 of 2
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	cellulose degradation	100	5 of 5
66794	ceramide biosynthesis	100	1 of 1
66794	gluconeogenesis	100	8 of 8
66794	glycine betaine biosynthesis	100	5 of 5
66794	NAD metabolism	94.44	17 of 18
66794	flavin biosynthesis	93.33	14 of 15
66794	Entner Doudoroff pathway	90	9 of 10
66794	serine metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	glutamate and glutamine metabolism	85.71	24 of 28
66794	aclacinomycin biosynthesis	85.71	6 of 7
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	heme metabolism	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	propanol degradation	85.71	6 of 7
66794	citric acid cycle	85.71	12 of 14
66794	photosynthesis	85.71	12 of 14
66794	vitamin B12 metabolism	85.29	29 of 34
66794	purine metabolism	85.11	80 of 94
66794	leucine metabolism	84.62	11 of 13
66794	phenylalanine metabolism	84.62	11 of 13
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	proline metabolism	81.82	9 of 11
66794	metabolism of disaccharids	81.82	9 of 11
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	factor 420 biosynthesis	80	4 of 5
66794	3-chlorocatechol degradation	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	histidine metabolism	79.31	23 of 29
66794	degradation of pentoses	78.57	22 of 28
66794	d-mannose degradation	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	glycolysis	76.47	13 of 17
66794	degradation of sugar acids	76	19 of 25
66794	pyrimidine metabolism	75.56	34 of 45
66794	cyclohexanol degradation	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	ketogluconate metabolism	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	non-pathway related	73.68	28 of 38
66794	tryptophan metabolism	73.68	28 of 38
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	arginine metabolism	70.83	17 of 24
66794	starch degradation	70	7 of 10
66794	urea cycle	69.23	9 of 13
66794	degradation of sugar alcohols	68.75	11 of 16
66794	oxidative phosphorylation	67.03	61 of 91
66794	octane oxidation	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	degradation of hexoses	66.67	12 of 18
66794	acetoin degradation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	alanine metabolism	65.52	19 of 29
66794	lipid metabolism	64.52	20 of 31
66794	glutathione metabolism	64.29	9 of 14
66794	tyrosine metabolism	64.29	9 of 14
66794	d-xylose degradation	63.64	7 of 11
66794	lysine metabolism	61.9	26 of 42
66794	coenzyme M biosynthesis	60	6 of 10
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	methionine metabolism	57.69	15 of 26
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	nitrate assimilation	55.56	5 of 9
66794	ascorbate metabolism	54.55	12 of 22
66794	sulfate reduction	53.85	7 of 13
66794	kanosamine biosynthesis II	50	1 of 2
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	vitamin E metabolism	50	2 of 4
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	biotin biosynthesis	50	2 of 4
66794	cysteine metabolism	50	9 of 18
66794	lactate fermentation	50	2 of 4
66794	3-phenylpropionate degradation	46.67	7 of 15
66794	phenol degradation	45	9 of 20
66794	4-hydroxymandelate degradation	44.44	4 of 9
66794	lipid A biosynthesis	44.44	4 of 9
66794	allantoin degradation	44.44	4 of 9
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	creatinine degradation	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	bacilysin biosynthesis	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	cholesterol biosynthesis	36.36	4 of 11
66794	vitamin B6 metabolism	36.36	4 of 11
66794	sphingosine metabolism	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	polyamine pathway	30.43	7 of 23
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	chlorophyll metabolism	27.78	5 of 18
66794	carotenoid biosynthesis	27.27	6 of 22
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	carnitine metabolism	25	2 of 8
66794	catecholamine biosynthesis	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	toluene degradation	25	1 of 4
66794	alginate biosynthesis	25	1 of 4

Isolation source categories

Isolation

Risk assessment

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM301455v1 assembly for Haloactinopolyspora alba DSM 45211	contig	GCA_003014555	648780.3	2728369474	648780	67.25
66792	ASM413852v1 assembly for Haloactinopolyspora alba YIM 93246	scaffold	GCA_004138525	648780.4	8062230249	648780	66.06

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15781	Haloactinopolyspora alba strain YIM 93246 16S ribosomal RNA gene, partial sequence	FJ969846	1432		648780

GC content

Predictions

Literature

Title	Authors	Journal	DOI	Year
Fabrication of lignin-based sub-micro hybrid particle as a novel support for adenylate cyclase immobilization.	Jiang D, Xu T, Xiao H, Xu W, Zhu Q, Liu D, Chen Y, Ying H, Niu H, Li M.	Colloids Surf B Biointerfaces	10.1016/j.colsurfb.2023.113658	2024
Exploring prokaryotic diversity in permafrost-affected soils of Ladakh's Changthang region and its geochemical drivers.	Ali A, Dolma P, Vishnivetskaya TA, Namgail T, Dolma T, Chauhan A.	Sci Rep	10.1038/s41598-025-94542-9	2025
Common evolutionary origins of the bacterial glycyl tRNA synthetase and alanyl tRNA synthetase.	Alvarez-Carreno C, Arciniega M, Ribas de Pouplana L, Petrov AS, Hernandez-Gonzalez A, Dimas-Torres JU, Valencia-Sanchez MI, Williams LD, Torres-Larios A.	Protein Sci	10.1002/pro.4844	2023
Haloactinopolyspora alkaliphila sp. nov., and emended description of the genus Haloactinopolyspora.	Zhang YG, Liu Q, Wang HF, Zhang DF, Zhang YM, Park DJ, Kim CJ, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.062646-0	2014
Haloactinopolyspora alba gen. nov., sp. nov., a halophilic filamentous actinomycete isolated from a salt lake, with proposal of Jiangellaceae fam. nov. and Jiangellineae subord. nov.	Tang SK, Zhi XY, Wang Y, Shi R, Lou K, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.021725-0	2010