Name: Gracilibacter thermotolerans JW/YJL-S1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17818

Type strain:

Species: Gracilibacter thermotolerans

Strain Designation: JW/YJL-S1

Culture col. no.: DSM 17427, ATCC BAA-1219

Strain history: <- J. Wiegel, Univ. of Georgia, Athens, USA; JW/YJL-S1 <- Y.-J. Lee

NCBI tax ID(s): 694434 (strain), 342666 (species)

SI-ID 297204

ATCC BAA-1219, DSM 17427

Section

Gracilibacter thermotolerans JW/YJL-S1 is an anaerobe, thermophilic bacterium that was isolated from sediment.

anaerobe
thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Gracilibacteraceae*
	Genus	*Gracilibacter*
	Species	**Gracilibacter thermotolerans**
	Full Scientific Name (LPSN)	Gracilibacter thermotolerans Lee et al. 2006

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6962]

Culture medium

RUMINOCLOSTRIDIUM CELLULOLYTICUM (CM3) MEDIUM (DSMZ Medium 520)

[Ref.: #6962]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6962]			growth	45 °C

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Temperature range

thermophilic

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6962]	Sample type/isolated from	sediment
[Ref.: #6962]	Geographic location (country and/or sea, region)	Aiken, SC
[Ref.: #6962]	Country	USA
[Ref.: #6962]	Country ISO 3 Code	USA
[Ref.: #6962]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

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Global distribution of 16S sequence DQ117469 (>99% sequence identity) for Gracilibacter thermotolerans subclade from Microbeatlas

Aquatic Samples	154
Soil Samples	617
Animal Samples	63
Plant Samples	275
Total Samples	1109

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6962]	Gracilibacter thermotolerans strain JW/YJL-S1 clone 1 16S ribosomal RNA gene, partial sequence	DQ117465	1549	ENA	694434 tax ID
[Ref.: #6962]	Gracilibacter thermotolerans strain JW/YJL-S1 clone 2 16S ribosomal RNA gene, partial sequence	DQ117466	1550	ENA	694434 tax ID
[Ref.: #6962]	Gracilibacter thermotolerans strain JW/YJL-S1 clone 3 16S ribosomal RNA gene, partial sequence	DQ117467	1538	ENA	694434 tax ID
[Ref.: #6962]	Gracilibacter thermotolerans strain JW/YJL-S1 clone 4 16S ribosomal RNA gene, partial sequence	DQ117468	1543	ENA	694434 tax ID
[Ref.: #6962]	Gracilibacter thermotolerans strain JW/YJL-S1 clone 5 16S ribosomal RNA gene, partial sequence	DQ117469	1526	ENA	694434 tax ID

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GC-content

42.8 mol%

Availability in culture collections External links

[Ref.: #6962]

Culture collection no.

DSM 17427, ATCC BAA-1219

[Ref.: #86809]

SI-ID 297204

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lutispora thermophila gen. nov., sp. nov., a thermophilic, spore-forming bacterium isolated from a thermophilic methanogenic bioreactor digesting municipal solid wastes.	Shiratori H, Ohiwa H, Ikeno H, Ayame S, Kataoka N, Miya A, Beppu T, Ueda K	Int J Syst Evol Microbiol	10.1099/ijs.0.65490-0	2008	*
Phylogeny	Gracilibacter thermotolerans gen. nov., sp. nov., an anaerobic, thermotolerant bacterium from a constructed wetland receiving acid sulfate water.	Lee YJ, Romanek CS, Mills GL, Davis RC, Whitman WB, Wiegel J	Int J Syst Evol Microbiol	10.1099/ijs.0.64040-0	2006	*

References

#6962

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17427

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86809

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297204.1 )

* These data were automatically processed and therefore are not curated

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