Name: Caldicoprobacter algeriensis TH7C1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17804

Type strain:

Species: Caldicoprobacter algeriensis

Strain Designation: TH7C1

Culture col. no.: DSM 22661, JCM 16184

Strain history: M.-L. Fardeau TH7C1.

NCBI tax ID(s): 699281 (species)

SI-ID 399636

DSM 22661

Section

Caldicoprobacter algeriensis TH7C1 is an anaerobe, thermophilic bacterium that was isolated from hot spring.

anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Caldicoprobacteraceae*
	Genus	*Caldicoprobacter*
	Species	**Caldicoprobacter algeriensis**
	Full Scientific Name (LPSN)	Caldicoprobacter algeriensis Bouanane-Darenfed et al. 2012

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16453]

Culture medium

CALDICOPROBACTER ALGERIENSIS MEDIUM (DSMZ Medium 1292)

[Ref.: #16453]

Culture medium growth

[Ref.: #16453]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16453]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16453]			growth	70 °C
[Ref.: #67770]			growth	70 °C

[Ref.: #16453]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16453]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16453]	Sample type/isolated from	hot spring
[Ref.: #16453]	Geographic location (country and/or sea, region)	near Guelma at an altitude of 320 m
[Ref.: #16453]	Country	Algeria
[Ref.: #16453]	Country ISO 3 Code	DZA
[Ref.: #16453]	Continent	Africa
[Ref.: #16453]	Geographic location	36.4500°/7.4167°

[Ref.: #67770]	Sample type/isolated from	Hydrothermal hot spring of Guelma in the northeast of Algeria
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GU216701 (>99% sequence identity) for Caldicoprobacter algeriensis subclade from Microbeatlas

Aquatic Samples	5
Soil Samples	8
Animal Samples
Plant Samples
Total Samples	13

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16453]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16453]	Caldicoprobacter algeriensis strain TH7C1 16S ribosomal RNA gene, partial sequence	GU216701	1520	ENA	699281 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Caldicoprobacter algeriensis TH7C1	GCA_023838525	contig	GenBank	699281 tax ID	*

[Ref.: #16453]

GC-content

44.7 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Caldicoprobacter algeriensis TH7C1 NCBI: GCA_023838525.1
[Ref.: #69480]	flagellated	no	91.727	no
[Ref.: #69480]	gram-positive	yes	78.327	no
[Ref.: #69480]	anaerobic	yes	98.72	no
[Ref.: #69480]	aerobic	no	97.957	yes
[Ref.: #69480]	halophile	no	95.758	no
[Ref.: #69480]	spore-forming	yes	75.041	no
[Ref.: #69480]	motile	yes	55.342	no
[Ref.: #69480]	glucose-ferment	yes	61.54	no
[Ref.: #69480]	thermophile	yes	100	yes
[Ref.: #69480]	glucose-util	yes	90.905	no

Availability in culture collections External links

[Ref.: #16453]

Culture collection no.

DSM 22661, JCM 16184

[Ref.: #86796]

SI-ID 399636

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Caldicoprobacter guelmensis sp. nov., a thermophilic, anaerobic, xylanolytic bacterium isolated from a hot spring.	Bouanane-Darenfed A, Ben Hania W, Hacene H, Cayol JL, Ollivier B, Fardeau ML	Int J Syst Evol Microbiol	10.1099/ijs.0.043497-0	2012	*
Phylogeny	Genome sequence and Carbohydrate Active Enzymes (CAZymes) repertoire of the thermophilic Caldicoprobacter algeriensis TH7C1(T).	Ameri R, Garcia JL, Derenfed AB, Pradel N, Neifar S, Mhiri S, Mezghanni M, Jaouadi NZ, Barriuso J, Bejar S	Microb Cell Fact	10.1186/s12934-022-01818-0	2022	*
Enzymology	Novel serine keratinase from Caldicoprobacter algeriensis exhibiting outstanding hide dehairing abilities.	Bouacem K, Bouanane-Darenfed A, Zarai Jaouadi N, Joseph M, Hacene H, Ollivier B, Fardeau ML, Bejar S, Jaouadi B	Int J Biol Macromol	10.1016/j.ijbiomac.2016.01.074	2016	*
Enzymology	Characterization of a purified thermostable xylanase from Caldicoprobacter algeriensis sp. nov. strain TH7C1(T).	Amel BD, Nawel B, Khelifa B, Mohammed G, Manon J, Salima KG, Farida N, Hocine H, Bernard O, Jean-Luc C, Marie-Laure F	Carbohydr Res	10.1016/j.carres.2015.10.013	2015	*
Enzymology	Partial characterization of xylanase produced by Caldicoprobacter algeriensis, a new thermophilic anaerobic bacterium isolated from an Algerian hot spring.	Bouacem K, Bouanane-Darenfed A, Boucherba N, Joseph M, Gagaoua M, Ben Hania W, Kecha M, Benallaoua S, Hacene H, Ollivier B, Fardeau ML	Appl Biochem Biotechnol	10.1007/s12010-014-1153-2	2014	*
Phylogeny	Caldicoprobacter algeriensis sp. nov. a new thermophilic anaerobic, xylanolytic bacterium isolated from an Algerian hot spring.	Bouanane-Darenfed A, Fardeau ML, Gregoire P, Joseph M, Kebbouche-Gana S, Benayad T, Hacene H, Cayol JL, Ollivier B	Curr Microbiol	10.1007/s00284-010-9789-9	2010	*

References

#16453

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22661

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#86796

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399636.1 )

* These data were automatically processed and therefore are not curated

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